Wall clock time and date at job start Mon Mar 30 2020 06:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99741 * 3 2 1 5 5 H 1.48488 * 109.47487 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47026 * 150.00561 * 3 2 1 7 7 C 1.37874 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99767 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 H 1.08992 * 109.47046 * 304.99824 * 10 9 7 12 12 C 1.52997 * 109.47021 * 65.00201 * 10 9 7 13 13 N 1.46899 * 109.46912 * 184.99782 * 12 10 9 14 14 C 1.50699 * 109.46610 * 185.00088 * 10 9 7 15 15 C 1.38177 * 120.01696 * 299.71871 * 14 10 9 16 16 C 1.38219 * 120.06834 * 179.77188 * 15 14 10 17 17 C 1.38409 * 120.09844 * 0.51462 * 16 15 14 18 18 Cl 1.73602 * 119.98633 * 179.76897 * 17 16 15 19 19 C 1.38236 * 120.02853 * 359.74090 * 17 16 15 20 20 C 1.38723 * 120.01707 * 120.00561 * 14 10 9 21 21 O 1.35905 * 120.04631 * 359.94553 * 20 14 10 22 22 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 24 24 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 25 25 H 1.09000 * 109.47435 * 304.99553 * 12 10 9 26 26 H 1.09001 * 109.47641 * 65.00057 * 12 10 9 27 27 H 1.00900 * 111.00138 * 179.97438 * 13 12 10 28 28 H 1.00895 * 111.00162 * 303.95401 * 13 12 10 29 29 H 1.08000 * 119.96208 * 0.02724 * 15 14 10 30 30 H 1.07997 * 119.95026 * 180.23445 * 16 15 14 31 31 H 1.08003 * 120.03382 * 180.02562 * 19 17 16 32 32 H 0.96698 * 113.99464 * 90.00093 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 1 3.5872 -3.1753 0.8421 12 6 3.6163 -3.3208 -1.3070 13 7 4.0004 -4.7378 -1.2574 14 6 5.5235 -2.6383 0.1234 15 6 6.2966 -2.0162 -0.8382 16 6 7.6741 -2.0130 -0.7237 17 6 8.2829 -2.6420 0.3485 18 17 10.0135 -2.6414 0.4862 19 6 7.5136 -3.2701 1.3100 20 6 6.1308 -3.2695 1.1991 21 8 5.3721 -3.8859 2.1432 22 1 -0.4850 0.8401 0.0004 23 1 3.8753 -0.6796 0.8894 24 1 3.8746 -0.6807 -0.8905 25 1 2.5373 -3.2414 -1.4394 26 1 4.1215 -2.8365 -2.1426 27 1 3.7429 -5.2124 -2.1098 28 1 4.9869 -4.8387 -1.0709 29 1 5.8239 -1.5284 -1.6778 30 1 8.2764 -1.5230 -1.4743 31 1 7.9885 -3.7605 2.1468 32 1 5.1889 -4.8164 1.9545 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261288233.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:48 Heat of formation + Delta-G solvation = -62.209886 kcal Electronic energy + Delta-G solvation = -16703.790553 eV Core-core repulsion = 13881.658367 eV Total energy + Delta-G solvation = -2822.132187 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.16984 -38.04980 -37.75480 -36.71184 -34.78599 -33.03028 -31.28826 -30.58734 -27.47539 -24.55760 -24.00607 -23.28805 -20.73641 -19.53964 -18.90288 -17.38667 -17.11825 -16.78499 -16.17395 -16.13590 -15.56033 -15.26149 -14.81989 -14.61963 -14.18228 -14.12957 -13.59659 -13.32930 -13.18266 -12.84976 -12.64076 -12.25426 -12.00118 -11.87884 -11.76212 -11.62719 -11.41367 -11.06102 -10.73877 -9.87203 -9.59362 -9.38457 -8.26615 -6.29174 0.08838 0.19944 1.08087 1.33412 1.37215 1.47937 2.36283 2.49597 3.08201 3.30423 3.68419 3.82064 3.86333 4.06638 4.31688 4.35976 4.44962 4.65052 4.76430 4.86899 4.96457 5.10600 5.15270 5.23012 5.36723 5.41923 5.64806 5.70651 5.72755 6.27380 6.31486 6.68129 6.77735 6.84225 7.34435 8.89773 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.023942 B = 0.006156 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.224051 B = 4547.146904 C = 5085.317778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.008 3.992 3 Si 0.940 3.060 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.254 1.254 7 C -0.518 4.518 8 H 0.039 0.961 9 C 0.004 3.996 10 C -0.027 4.027 11 H 0.067 0.933 12 C 0.085 3.915 13 N -0.847 5.847 14 C -0.097 4.097 15 C -0.098 4.098 16 C -0.114 4.114 17 C -0.030 4.030 18 Cl -0.063 7.063 19 C -0.138 4.138 20 C 0.118 3.882 21 O -0.501 6.501 22 H 0.265 0.735 23 H 0.007 0.993 24 H 0.023 0.977 25 H 0.056 0.944 26 H 0.031 0.969 27 H 0.348 0.652 28 H 0.340 0.660 29 H 0.139 0.861 30 H 0.155 0.845 31 H 0.151 0.849 32 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.448 -7.314 -2.333 20.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.189 4.189 3 Si 0.764 3.236 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.178 1.178 7 C -0.556 4.556 8 H 0.057 0.943 9 C -0.034 4.034 10 C -0.045 4.045 11 H 0.086 0.914 12 C -0.046 4.046 13 N -0.378 5.378 14 C -0.098 4.098 15 C -0.116 4.116 16 C -0.132 4.132 17 C -0.057 4.057 18 Cl -0.034 7.034 19 C -0.157 4.157 20 C 0.073 3.927 21 O -0.314 6.314 22 H 0.074 0.926 23 H 0.026 0.974 24 H 0.042 0.958 25 H 0.075 0.925 26 H 0.049 0.951 27 H 0.161 0.839 28 H 0.152 0.848 29 H 0.156 0.844 30 H 0.172 0.828 31 H 0.168 0.832 32 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 18.958 -6.724 -1.433 20.166 hybrid contribution 0.270 0.606 -0.807 1.045 sum 19.229 -6.118 -2.240 20.302 Atomic orbital electron populations 1.70057 1.08122 1.27927 1.52944 1.25892 0.95469 1.03037 0.94460 0.85806 0.79407 0.79070 0.79313 1.18679 1.21225 1.17792 1.21375 0.91478 0.93119 1.49607 0.94269 1.19487 0.94278 0.93461 0.96162 1.19849 0.89348 0.96748 0.98606 0.91412 1.21599 1.00105 0.87837 0.95033 1.58668 1.23227 1.12637 1.43236 1.20550 0.96380 0.98575 0.94312 1.21051 0.93013 0.98412 0.99141 1.21219 0.94359 0.99690 0.97957 1.20720 0.84905 1.02537 0.97555 1.98363 1.09674 1.97501 1.97870 1.21346 0.92258 1.02115 0.99936 1.18183 0.88725 0.97221 0.88592 1.84798 1.71354 1.30325 1.44923 0.92621 0.97433 0.95831 0.92535 0.95051 0.83868 0.84760 0.84372 0.82752 0.83167 0.73312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.46 13.96 21.45 0.30 -59.16 16 2 C 0.01 0.48 5.47 84.65 0.46 0.94 16 3 Si 0.94 44.42 27.47 68.60 1.88 46.31 16 4 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 6 H -0.25 -11.45 6.54 99.48 0.65 -10.80 16 7 C -0.52 -29.37 8.89 25.60 0.23 -29.14 16 8 H 0.04 2.45 7.32 -2.91 -0.02 2.43 16 9 C 0.00 0.18 3.26 29.85 0.10 0.28 16 10 C -0.03 -1.01 2.16 -11.54 -0.02 -1.03 16 11 H 0.07 2.87 6.99 -2.39 -0.02 2.85 16 12 C 0.08 2.92 6.02 86.30 0.52 3.44 16 13 N -0.85 -22.78 9.62 -186.72 -1.80 -24.58 16 14 C -0.10 -3.00 3.83 -19.76 -0.08 -3.08 16 15 C -0.10 -2.62 8.70 22.25 0.19 -2.43 16 16 C -0.11 -2.56 9.83 22.31 0.22 -2.34 16 17 C -0.03 -0.69 6.32 22.31 0.14 -0.55 16 18 Cl -0.06 -1.23 28.95 -2.72 -0.08 -1.31 16 19 C -0.14 -3.28 9.77 22.39 0.22 -3.06 16 20 C 0.12 3.32 6.68 22.50 0.15 3.47 16 21 O -0.50 -14.09 12.27 -92.48 -1.13 -15.23 16 22 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 23 H 0.01 0.36 7.20 -2.39 -0.02 0.34 16 24 H 0.02 1.03 7.01 -2.39 -0.02 1.01 16 25 H 0.06 2.37 6.82 -2.39 -0.02 2.35 16 26 H 0.03 0.99 7.21 -2.39 -0.02 0.98 16 27 H 0.35 7.90 9.08 -89.69 -0.81 7.09 16 28 H 0.34 7.94 8.07 -89.70 -0.72 7.21 16 29 H 0.14 3.57 7.13 -2.91 -0.02 3.54 16 30 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 31 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 32 H 0.41 7.87 9.06 -74.06 -0.67 7.20 16 Total: -1.00 -66.66 284.26 0.22 -66.45 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: -1.09 Total: 21.01 kcal Atomic # 6 Polarization: -35.62 SS G_CDS: 2.13 Total: -33.49 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -1.50 Total: -83.74 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -1.13 Total: -15.23 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.31 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -66.66 0.22 -66.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261288233.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.239 kcal (2) G-P(sol) polarization free energy of solvation -66.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds