Wall clock time and date at job start Mon Mar 30 2020 06:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00256 * 2 1 4 4 H 1.48497 * 109.47066 * 239.99591 * 3 2 1 5 5 H 1.48500 * 109.46930 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47044 * 119.99453 * 3 2 1 7 7 C 1.38818 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00055 * 164.29517 * 7 2 1 9 9 N 1.36932 * 119.99560 * 344.30416 * 7 2 1 10 10 C 1.47250 * 121.34385 * 155.45383 * 9 7 2 11 11 C 1.52784 * 107.88449 * 115.65002 * 10 9 7 12 12 C 1.50605 * 110.86052 * 47.45296 * 11 10 9 13 13 C 1.39120 * 117.58641 * 160.45200 * 12 11 10 14 14 Cl 1.73599 * 119.70327 * 359.39527 * 13 12 11 15 15 C 1.37986 * 120.59165 * 179.37012 * 13 12 11 16 16 C 1.38471 * 119.78552 * 0.03013 * 15 13 12 17 17 F 1.35100 * 120.15879 * 180.21480 * 16 15 13 18 18 C 1.38180 * 119.67444 * 0.39115 * 16 15 13 19 19 C 1.37666 * 122.86535 * 340.20127 * 12 11 10 20 20 C 1.46680 * 121.35600 * 335.42872 * 9 7 2 21 21 H 0.97003 * 119.99668 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.77610 * 235.24583 * 10 9 7 23 23 H 1.08999 * 109.77813 * 356.04969 * 10 9 7 24 24 H 1.09002 * 109.20065 * 167.81399 * 11 10 9 25 25 H 1.09003 * 109.19548 * 287.14827 * 11 10 9 26 26 H 1.08001 * 120.10543 * 180.02562 * 15 13 12 27 27 H 1.07999 * 119.73700 * 179.75169 * 18 16 15 28 28 H 1.09001 * 109.43679 * 104.27403 * 20 9 7 29 29 H 1.09004 * 109.39536 * 344.38615 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0600 -1.2198 -0.2526 9 7 1.3638 -2.3658 0.3219 10 6 1.8520 -3.6703 -0.1557 11 6 2.2746 -4.4882 1.0636 12 6 1.2170 -4.4398 2.1346 13 6 1.2401 -5.4333 3.1082 14 17 2.4526 -6.6739 3.0427 15 6 0.3081 -5.4411 4.1258 16 6 -0.6599 -4.4524 4.1796 17 9 -1.5733 -4.4503 5.1750 18 6 -0.6892 -3.4701 3.2082 19 6 0.2494 -3.4618 2.1854 20 6 0.1574 -2.3633 1.1562 21 1 -0.4850 0.8401 -0.0004 22 1 1.0558 -4.1890 -0.6899 23 1 2.7065 -3.5249 -0.8166 24 1 2.4334 -5.5238 0.7630 25 1 3.2054 -4.0837 1.4614 26 1 0.3336 -6.2159 4.8777 27 1 -1.4462 -2.7008 3.2470 28 1 -0.7183 -2.5271 0.5282 29 1 0.0676 -1.4008 1.6599 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295696333.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:52 Heat of formation + Delta-G solvation = -11.066744 kcal Electronic energy + Delta-G solvation = -16544.918817 eV Core-core repulsion = 13601.544059 eV Total energy + Delta-G solvation = -2943.374759 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.052 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.70163 -39.45100 -36.51265 -35.69437 -32.76939 -31.50687 -30.13639 -28.29680 -25.77734 -23.28535 -22.34337 -22.03456 -19.34701 -17.25921 -16.94690 -16.04209 -15.47185 -15.16795 -14.93741 -14.40679 -14.01569 -13.64182 -13.52439 -12.94747 -12.82543 -12.45520 -11.97811 -11.57260 -11.50029 -11.18820 -10.88321 -10.77692 -10.64006 -10.48502 -10.31132 -9.96090 -9.93475 -8.78166 -8.34141 -8.07479 -6.88676 -5.91382 -3.31261 1.28888 1.43445 2.22793 3.34093 3.40209 3.41388 3.74656 4.38773 4.50538 4.93673 5.11860 5.19486 5.34258 5.37002 5.51974 5.79299 5.95673 6.00465 6.12277 6.20126 6.38970 6.45170 6.65704 6.75581 6.81376 7.01191 7.12790 7.40959 7.68608 8.25981 9.06808 9.69028 10.26202 11.19564 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.024410 B = 0.007092 C = 0.005899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.815512 B = 3947.243225 C = 4745.424243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.003 3.997 3 Si 0.907 3.093 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.251 4.251 8 H 0.071 0.929 9 N -0.593 5.593 10 C 0.142 3.858 11 C -0.100 4.100 12 C -0.064 4.064 13 C -0.015 4.015 14 Cl -0.071 7.071 15 C -0.165 4.165 16 C 0.098 3.902 17 F -0.141 7.141 18 C -0.151 4.151 19 C -0.037 4.037 20 C 0.204 3.796 21 H 0.257 0.743 22 H 0.029 0.971 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.136 0.864 27 H 0.139 0.861 28 H 0.050 0.950 29 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.878 -9.960 5.706 11.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.196 4.196 3 Si 0.736 3.264 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.380 4.380 8 H 0.089 0.911 9 N -0.314 5.314 10 C 0.015 3.985 11 C -0.139 4.139 12 C -0.065 4.065 13 C -0.042 4.042 14 Cl -0.042 7.042 15 C -0.184 4.184 16 C 0.079 3.921 17 F -0.120 7.120 18 C -0.170 4.170 19 C -0.040 4.040 20 C 0.078 3.922 21 H 0.067 0.933 22 H 0.047 0.953 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.095 0.905 26 H 0.154 0.846 27 H 0.157 0.843 28 H 0.068 0.932 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.859 -9.888 5.698 11.444 hybrid contribution 0.270 0.672 0.405 0.830 sum 1.129 -9.215 6.103 11.110 Atomic orbital electron populations 1.69968 1.05230 1.25966 1.54172 1.25018 0.95414 0.98463 1.00685 0.86297 0.78870 0.82993 0.78210 1.20784 1.21538 1.20940 1.19143 0.92431 0.84148 1.42327 0.91088 1.43997 1.30045 1.01592 1.55813 1.20946 0.97814 0.87003 0.92727 1.21063 0.96276 1.00714 0.95835 1.19541 0.97819 0.92989 0.96138 1.20740 0.93077 0.92809 0.97541 1.98332 1.55105 1.52801 1.98006 1.20641 0.96420 1.00799 1.00574 1.17296 0.89651 0.97235 0.87968 1.91474 1.64838 1.96364 1.59322 1.21240 1.01644 0.99351 0.94808 1.20942 0.91079 0.96217 0.95729 1.19856 0.89696 0.93867 0.88735 0.93309 0.95263 0.91634 0.91200 0.90469 0.84568 0.84341 0.93211 0.87850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.09 11.09 55.49 0.62 -24.47 15 2 C 0.00 0.07 4.99 -17.43 -0.09 -0.02 15 3 Si 0.91 21.01 29.58 -169.99 -5.03 15.98 15 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 7 C -0.25 -6.59 9.70 -15.06 -0.15 -6.74 15 8 H 0.07 1.82 7.88 -52.49 -0.41 1.40 15 9 N -0.59 -14.18 2.97 -173.92 -0.52 -14.70 15 10 C 0.14 2.81 6.52 -3.74 -0.02 2.78 15 11 C -0.10 -1.73 5.24 -28.04 -0.15 -1.88 15 12 C -0.06 -1.15 5.77 -104.55 -0.60 -1.75 15 13 C -0.01 -0.24 6.31 -39.35 -0.25 -0.49 15 14 Cl -0.07 -0.98 27.18 -51.86 -1.41 -2.39 15 15 C -0.16 -2.49 9.80 -39.59 -0.39 -2.88 15 16 C 0.10 1.58 7.30 -39.52 -0.29 1.29 15 17 F -0.14 -2.20 17.27 2.25 0.04 -2.16 15 18 C -0.15 -2.61 9.60 -39.39 -0.38 -2.99 15 19 C -0.04 -0.72 5.82 -104.56 -0.61 -1.33 15 20 C 0.20 4.64 4.85 -5.04 -0.02 4.62 15 21 H 0.26 6.90 8.31 -40.82 -0.34 6.56 15 22 H 0.03 0.57 8.14 -51.93 -0.42 0.15 15 23 H 0.07 1.24 7.96 -51.93 -0.41 0.83 15 24 H 0.07 1.06 7.10 -51.93 -0.37 0.69 15 25 H 0.08 1.36 8.14 -51.93 -0.42 0.94 15 26 H 0.14 1.75 8.06 -52.49 -0.42 1.33 15 27 H 0.14 2.23 8.05 -52.49 -0.42 1.81 15 28 H 0.05 1.19 8.14 -51.93 -0.42 0.77 15 29 H 0.10 2.60 6.34 -51.93 -0.33 2.27 15 LS Contribution 263.45 15.07 3.97 3.97 Total: -1.00 -26.93 263.45 -8.05 -34.97 By element: Atomic # 1 Polarization: 0.96 SS G_CDS: -2.77 Total: -1.82 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -2.94 Total: -9.39 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.10 Total: -39.17 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.41 Total: -2.39 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -26.93 -8.05 -34.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295696333.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.908 kcal (2) G-P(sol) polarization free energy of solvation -26.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds