Wall clock time and date at job start Mon Mar 30 2020 06:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 110.30592 * 2 1 4 4 N 1.28803 * 124.99017 * 62.85601 * 3 2 1 5 5 C 1.33648 * 116.05590 * 179.97438 * 4 3 2 6 6 C 1.41161 * 122.86071 * 179.97438 * 5 4 3 7 7 H 1.08007 * 119.99626 * 339.81196 * 6 5 4 8 8 C 1.39716 * 119.99971 * 159.80866 * 6 5 4 9 9 N 1.31018 * 120.00191 * 345.01026 * 8 6 5 10 10 Si 1.86804 * 119.99688 * 165.01297 * 8 6 5 11 11 H 1.48497 * 109.47157 * 94.20918 * 10 8 6 12 12 H 1.48500 * 109.46880 * 214.20874 * 10 8 6 13 13 H 1.48495 * 109.46972 * 334.20937 * 10 8 6 14 14 C 1.37699 * 114.27830 * 359.97438 * 5 4 3 15 15 S 1.70987 * 108.83700 * 0.02562 * 14 5 4 16 16 C 1.53706 * 110.33911 * 237.82526 * 2 1 3 17 17 C 1.52933 * 112.49449 * 238.19779 * 16 2 1 18 18 C 1.55148 * 108.95984 * 30.10386 * 17 16 2 19 19 S 1.83397 * 110.42872 * 122.23369 * 2 1 3 20 20 H 1.09000 * 109.47200 * 60.69428 * 1 2 3 21 21 H 1.08999 * 109.47652 * 180.70318 * 1 2 3 22 22 H 1.09002 * 109.46680 * 300.70011 * 1 2 3 23 23 H 0.96999 * 119.99806 * 179.97438 * 9 8 6 24 24 H 1.07999 * 125.58126 * 180.02562 * 14 5 4 25 25 H 1.08997 * 108.88870 * 358.99998 * 16 2 1 26 26 H 1.09006 * 108.88304 * 117.40239 * 16 2 1 27 27 H 1.09002 * 109.60325 * 150.03173 * 17 16 2 28 28 H 1.08999 * 109.60819 * 270.16984 * 17 16 2 29 29 H 1.08999 * 111.13274 * 76.47227 * 18 17 16 30 30 H 1.09003 * 111.13380 * 200.64391 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0529 1.4133 0.0000 4 7 1.8578 2.2731 0.9390 5 6 2.4052 3.4783 0.7545 6 6 2.2810 4.5273 1.6908 7 1 1.4862 4.5074 2.4219 8 6 3.1862 5.5914 1.6718 9 7 4.3066 5.4865 1.0008 10 14 2.7991 7.1637 2.6033 11 1 3.4164 7.1044 3.9526 12 1 3.3456 8.3270 1.8596 13 1 1.3274 7.3094 2.7382 14 6 3.1007 3.6094 -0.4266 15 16 3.0204 2.1309 -1.2817 16 6 2.0642 -0.7675 -1.2199 17 6 2.9658 -1.9382 -0.8258 18 6 2.5088 -2.4846 0.5526 19 16 2.1701 -0.9167 1.4538 20 1 -0.3633 0.5030 -0.8961 21 1 -0.3634 -1.0275 0.0126 22 1 -0.3633 0.5247 0.8837 23 1 4.9348 6.2255 0.9873 24 1 3.6130 4.5003 -0.7586 25 1 1.2200 -1.1497 -1.7937 26 1 2.6319 -0.0807 -1.8478 27 1 2.8901 -2.7264 -1.5749 28 1 3.9993 -1.5981 -0.7600 29 1 1.6048 -3.0859 0.4568 30 1 3.3058 -3.0507 1.0347 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306304940.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:53 Heat of formation + Delta-G solvation = 22.399289 kcal Electronic energy + Delta-G solvation = -14548.864442 eV Core-core repulsion = 12175.197761 eV Total energy + Delta-G solvation = -2373.666680 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.16865 -36.46934 -33.50514 -31.87955 -28.39736 -26.85710 -25.69808 -24.15967 -22.07255 -20.19691 -18.94374 -17.07754 -16.28772 -15.78080 -15.31788 -14.62307 -14.24721 -13.77119 -13.43298 -13.09352 -12.84374 -12.57918 -12.10770 -11.68041 -11.56297 -11.43014 -11.29317 -11.04372 -10.90659 -10.75219 -10.60195 -10.35829 -9.61640 -9.44149 -9.12908 -8.36926 -8.06355 -7.40011 -7.16951 -6.65447 -4.34180 1.77064 2.40585 2.65614 2.90079 3.07500 3.12903 3.19681 3.55828 4.01272 4.22317 4.56802 4.76218 4.87580 5.05573 5.22295 5.34735 5.42515 5.59577 5.67906 5.80624 5.92336 5.98102 6.12091 6.15311 6.44009 6.82443 7.23618 7.49914 7.61035 8.30425 8.73404 8.81708 9.44414 10.34581 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.036987 B = 0.006351 C = 0.005990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.842528 B = 4407.526095 C = 4673.496026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.082 3.918 3 C 0.055 3.945 4 N -0.453 5.453 5 C 0.203 3.797 6 C -0.424 4.424 7 H 0.079 0.921 8 C 0.070 3.930 9 N -0.807 5.807 10 Si 0.918 3.082 11 H -0.272 1.272 12 H -0.277 1.277 13 H -0.262 1.262 14 C -0.349 4.349 15 S -0.008 6.008 16 C -0.128 4.128 17 C -0.121 4.121 18 C -0.086 4.086 19 S -0.251 6.251 20 H 0.063 0.937 21 H 0.062 0.938 22 H 0.073 0.927 23 H 0.277 0.723 24 H 0.169 0.831 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.054 -11.284 -5.020 12.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.032 4.032 3 C -0.227 4.227 4 N -0.169 5.169 5 C 0.081 3.919 6 C -0.460 4.460 7 H 0.097 0.903 8 C -0.146 4.146 9 N -0.435 5.435 10 Si 0.742 3.258 11 H -0.197 1.197 12 H -0.202 1.202 13 H -0.186 1.186 14 C -0.490 4.490 15 S 0.241 5.759 16 C -0.168 4.168 17 C -0.160 4.160 18 C -0.234 4.234 19 S -0.023 6.023 20 H 0.082 0.918 21 H 0.081 0.919 22 H 0.092 0.908 23 H 0.087 0.913 24 H 0.186 0.814 25 H 0.097 0.903 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.601 -11.283 -4.322 12.359 hybrid contribution -0.079 1.323 -0.098 1.329 sum -2.681 -9.959 -4.420 11.221 Atomic orbital electron populations 1.21963 0.90945 1.01916 1.03375 1.21401 0.97889 0.90555 0.93359 1.26566 1.03605 0.97237 0.95286 1.66943 1.21646 1.02377 1.25942 1.17873 0.92803 0.88429 0.92805 1.18715 1.11963 1.01447 1.13861 0.90257 1.25718 0.93561 0.99979 0.95355 1.69845 1.06496 1.31488 1.35675 0.86147 0.79851 0.80277 0.79483 1.19705 1.20228 1.18582 1.26099 1.21697 1.00752 1.00431 1.82556 1.54433 1.10576 1.28379 1.22293 1.00340 0.97147 0.97015 1.22322 1.00947 0.97008 0.95689 1.24358 1.04080 0.97566 0.97409 1.88316 1.85168 1.10698 1.18128 0.91772 0.91922 0.90771 0.91269 0.81382 0.90325 0.89500 0.90325 0.90266 0.89542 0.87973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.88 8.36 37.16 0.31 -1.57 16 2 C 0.08 1.43 1.14 -91.41 -0.10 1.33 16 3 C 0.05 1.23 6.07 -13.55 -0.08 1.15 16 4 N -0.45 -11.96 10.65 -8.36 -0.09 -12.05 16 5 C 0.20 5.77 6.40 -86.16 -0.55 5.21 16 6 C -0.42 -12.12 9.39 -37.92 -0.36 -12.47 16 7 H 0.08 2.23 7.89 -52.48 -0.41 1.81 16 8 C 0.07 1.85 5.31 -17.35 -0.09 1.76 16 9 N -0.81 -21.93 10.86 55.54 0.60 -21.33 16 10 Si 0.92 19.83 29.58 -169.99 -5.03 14.80 16 11 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 12 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 13 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 14 C -0.35 -9.41 9.73 30.54 0.30 -9.11 16 15 S -0.01 -0.17 20.80 -107.50 -2.24 -2.41 16 16 C -0.13 -1.78 5.70 -26.40 -0.15 -1.93 16 17 C -0.12 -1.41 6.34 -25.63 -0.16 -1.57 16 18 C -0.09 -1.02 7.52 38.29 0.29 -0.74 16 19 S -0.25 -4.46 22.09 -107.50 -2.37 -6.83 16 20 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 21 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 23 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 24 H 0.17 4.73 6.37 -52.49 -0.33 4.40 16 25 H 0.08 0.89 7.62 -51.93 -0.40 0.50 16 26 H 0.09 1.30 5.51 -47.09 -0.26 1.04 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 273.93 15.07 4.13 4.13 Total: -1.00 -30.59 273.93 -9.10 -39.69 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -3.50 Total: 1.95 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -0.60 Total: -17.94 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: 0.51 Total: -33.39 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.03 Total: 14.80 kcal Atomic # 16 Polarization: -4.63 SS G_CDS: -4.61 Total: -9.24 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.59 -9.10 -39.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306304940.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.091 kcal (2) G-P(sol) polarization free energy of solvation -30.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds