Wall clock time and date at job start Mon Mar 30 2020 06:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 110.30592 * 2 1 4 4 N 1.28803 * 124.99017 * 62.85601 * 3 2 1 5 5 C 1.33648 * 116.05590 * 179.97438 * 4 3 2 6 6 C 1.41161 * 122.86071 * 179.97438 * 5 4 3 7 7 H 1.08007 * 119.99626 * 339.81196 * 6 5 4 8 8 C 1.39716 * 119.99971 * 159.80866 * 6 5 4 9 9 N 1.31018 * 120.00191 * 345.01026 * 8 6 5 10 10 Si 1.86804 * 119.99688 * 165.01297 * 8 6 5 11 11 H 1.48497 * 109.47157 * 94.20918 * 10 8 6 12 12 H 1.48500 * 109.46880 * 214.20874 * 10 8 6 13 13 H 1.48495 * 109.46972 * 334.20937 * 10 8 6 14 14 C 1.37699 * 114.27830 * 359.97438 * 5 4 3 15 15 S 1.70987 * 108.83700 * 0.02562 * 14 5 4 16 16 C 1.53706 * 110.33911 * 237.82526 * 2 1 3 17 17 C 1.52933 * 112.49449 * 238.19779 * 16 2 1 18 18 C 1.55148 * 108.95984 * 30.10386 * 17 16 2 19 19 S 1.83397 * 110.42872 * 122.23369 * 2 1 3 20 20 H 1.09000 * 109.47200 * 60.69428 * 1 2 3 21 21 H 1.08999 * 109.47652 * 180.70318 * 1 2 3 22 22 H 1.09002 * 109.46680 * 300.70011 * 1 2 3 23 23 H 0.96999 * 119.99806 * 179.97438 * 9 8 6 24 24 H 1.07999 * 125.58126 * 180.02562 * 14 5 4 25 25 H 1.08997 * 108.88870 * 358.99998 * 16 2 1 26 26 H 1.09006 * 108.88304 * 117.40239 * 16 2 1 27 27 H 1.09002 * 109.60325 * 150.03173 * 17 16 2 28 28 H 1.08999 * 109.60819 * 270.16984 * 17 16 2 29 29 H 1.08999 * 111.13274 * 76.47227 * 18 17 16 30 30 H 1.09003 * 111.13380 * 200.64391 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0529 1.4133 0.0000 4 7 1.8578 2.2731 0.9390 5 6 2.4052 3.4783 0.7545 6 6 2.2810 4.5273 1.6908 7 1 1.4862 4.5074 2.4219 8 6 3.1862 5.5914 1.6718 9 7 4.3066 5.4865 1.0008 10 14 2.7991 7.1637 2.6033 11 1 3.4164 7.1044 3.9526 12 1 3.3456 8.3270 1.8596 13 1 1.3274 7.3094 2.7382 14 6 3.1007 3.6094 -0.4266 15 16 3.0204 2.1309 -1.2817 16 6 2.0642 -0.7675 -1.2199 17 6 2.9658 -1.9382 -0.8258 18 6 2.5088 -2.4846 0.5526 19 16 2.1701 -0.9167 1.4538 20 1 -0.3633 0.5030 -0.8961 21 1 -0.3634 -1.0275 0.0126 22 1 -0.3633 0.5247 0.8837 23 1 4.9348 6.2255 0.9873 24 1 3.6130 4.5003 -0.7586 25 1 1.2200 -1.1497 -1.7937 26 1 2.6319 -0.0807 -1.8478 27 1 2.8901 -2.7264 -1.5749 28 1 3.9993 -1.5981 -0.7600 29 1 1.6048 -3.0859 0.4568 30 1 3.3058 -3.0507 1.0347 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306304940.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:53 Heat of formation + Delta-G solvation = 3.302934 kcal Electronic energy + Delta-G solvation = -14549.692522 eV Core-core repulsion = 12175.197761 eV Total energy + Delta-G solvation = -2374.494760 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.00117 -37.77987 -35.43277 -33.16766 -30.29567 -27.97838 -27.71772 -25.70247 -23.48186 -21.52417 -20.72878 -18.93128 -18.17952 -17.31390 -16.50365 -16.44436 -15.59791 -15.18346 -14.97424 -14.61720 -14.23583 -13.90902 -13.54279 -13.37526 -13.29191 -12.97572 -12.85034 -12.54951 -12.35356 -12.14926 -11.96001 -11.71348 -11.36912 -11.10906 -10.75071 -10.24334 -9.95579 -9.21466 -8.70832 -8.66016 -6.45023 0.16135 0.78190 1.17517 1.33673 1.35410 1.49667 1.51258 1.63858 2.18418 2.27238 3.19561 3.37260 3.49293 3.82444 4.02021 4.17018 4.34585 4.63585 4.66204 4.74227 4.76130 4.94995 5.01523 5.06654 5.15482 5.21059 5.24293 5.42316 5.54538 6.17210 6.69978 6.73223 7.47446 8.35967 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.036987 B = 0.006351 C = 0.005990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.842528 B = 4407.526095 C = 4673.496026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.081 3.919 3 C 0.069 3.931 4 N -0.496 5.496 5 C 0.178 3.822 6 C -0.469 4.469 7 H 0.067 0.933 8 C 0.029 3.971 9 N -0.835 5.835 10 Si 0.995 3.005 11 H -0.263 1.263 12 H -0.261 1.261 13 H -0.260 1.260 14 C -0.395 4.395 15 S 0.058 5.942 16 C -0.128 4.128 17 C -0.118 4.118 18 C -0.056 4.056 19 S -0.342 6.342 20 H 0.073 0.927 21 H 0.100 0.900 22 H 0.044 0.956 23 H 0.286 0.714 24 H 0.148 0.852 25 H 0.115 0.885 26 H 0.073 0.927 27 H 0.123 0.877 28 H 0.065 0.935 29 H 0.116 0.884 30 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.438 -13.364 -6.232 15.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.032 4.032 3 C -0.213 4.213 4 N -0.213 5.213 5 C 0.056 3.944 6 C -0.504 4.504 7 H 0.085 0.915 8 C -0.184 4.184 9 N -0.463 5.463 10 Si 0.815 3.185 11 H -0.188 1.188 12 H -0.185 1.185 13 H -0.184 1.184 14 C -0.535 4.535 15 S 0.307 5.693 16 C -0.167 4.167 17 C -0.156 4.156 18 C -0.204 4.204 19 S -0.114 6.114 20 H 0.092 0.908 21 H 0.118 0.882 22 H 0.063 0.937 23 H 0.096 0.904 24 H 0.166 0.834 25 H 0.134 0.866 26 H 0.091 0.909 27 H 0.141 0.859 28 H 0.084 0.916 29 H 0.135 0.865 30 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.968 -13.372 -5.563 14.784 hybrid contribution 0.059 1.773 0.226 1.788 sum -2.909 -11.599 -5.337 13.095 Atomic orbital electron populations 1.21955 0.89342 1.04025 1.02416 1.21741 0.99074 0.87766 0.94664 1.27654 1.01043 0.98767 0.93882 1.67004 1.23763 1.02517 1.27993 1.18227 0.93384 0.89400 0.93372 1.18999 1.12977 1.03539 1.14862 0.91468 1.26686 0.92773 1.02890 0.96078 1.69915 1.07188 1.32853 1.36344 0.85008 0.79622 0.75624 0.78237 1.18790 1.18492 1.18433 1.26026 1.22767 1.02973 1.01742 1.82039 1.53710 1.07000 1.26518 1.22387 1.01940 0.97310 0.95092 1.22347 0.99496 0.97228 0.96551 1.24540 1.05999 0.93872 0.95985 1.88624 1.85747 1.16006 1.21060 0.90800 0.88155 0.93722 0.90351 0.83429 0.86650 0.90872 0.85866 0.91625 0.86515 0.86291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.40 8.36 71.98 0.60 -2.80 16 2 C 0.08 2.72 1.14 -11.30 -0.01 2.70 16 3 C 0.07 3.12 6.07 88.55 0.54 3.66 16 4 N -0.50 -27.30 10.65 -180.35 -1.92 -29.22 16 5 C 0.18 10.65 6.40 39.46 0.25 10.90 16 6 C -0.47 -28.23 9.39 23.35 0.22 -28.02 16 7 H 0.07 4.03 7.89 -2.91 -0.02 4.00 16 8 C 0.03 1.59 5.31 85.17 0.45 2.04 16 9 N -0.83 -46.96 10.86 21.79 0.24 -46.72 16 10 Si 1.00 41.58 29.58 68.60 2.03 43.61 16 11 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 12 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 13 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 14 C -0.39 -22.24 9.73 67.69 0.66 -21.58 16 15 S 0.06 2.55 20.80 -56.49 -1.18 1.38 16 16 C -0.13 -3.05 5.70 30.81 0.18 -2.88 16 17 C -0.12 -2.19 6.34 31.31 0.20 -2.00 16 18 C -0.06 -1.11 7.52 72.72 0.55 -0.56 16 19 S -0.34 -11.79 22.09 -56.49 -1.25 -13.04 16 20 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 21 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 22 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.29 14.45 8.30 -92.71 -0.77 13.69 16 24 H 0.15 8.78 6.37 -2.91 -0.02 8.76 16 25 H 0.12 1.96 7.62 -2.39 -0.02 1.94 16 26 H 0.07 1.97 5.51 -5.46 -0.03 1.94 16 27 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -72.21 273.93 2.68 -69.53 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 1.13 Total: 13.00 kcal Atomic # 6 Polarization: -42.16 SS G_CDS: 3.63 Total: -38.53 kcal Atomic # 7 Polarization: -74.26 SS G_CDS: -1.68 Total: -75.94 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Atomic # 16 Polarization: -9.24 SS G_CDS: -2.42 Total: -11.67 kcal Total: -72.21 2.68 -69.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306304940.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.829 kcal (2) G-P(sol) polarization free energy of solvation -72.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds