Wall clock time and date at job start Mon Mar 30 2020 06:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38156 * 120.00045 * 2 1 4 4 C 1.38636 * 120.03171 * 179.97438 * 3 2 1 5 5 O 1.36028 * 119.98635 * 180.02562 * 4 3 2 6 6 C 1.42903 * 116.99672 * 0.02562 * 5 4 3 7 7 C 1.53000 * 109.46726 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.46912 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99776 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00001 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00114 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99955 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46999 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46979 * 120.00420 * 12 10 8 15 15 H 1.48498 * 109.46942 * 240.00334 * 12 10 8 16 16 C 1.38825 * 120.02987 * 0.27742 * 4 3 2 17 17 Cl 1.73596 * 120.00152 * 179.74238 * 16 4 3 18 18 C 1.38179 * 119.99742 * 359.49193 * 16 4 3 19 19 C 1.38835 * 119.99851 * 179.97438 * 2 1 3 20 20 N 1.39932 * 120.01591 * 0.02562 * 19 2 1 21 21 H 1.08992 * 109.47282 * 89.99535 * 1 2 3 22 22 H 1.09008 * 109.46961 * 209.99702 * 1 2 3 23 23 H 1.08998 * 109.47013 * 329.99292 * 1 2 3 24 24 H 1.07998 * 119.98764 * 359.97438 * 3 2 1 25 25 H 1.09002 * 109.47382 * 59.99952 * 6 5 4 26 26 H 1.09001 * 109.46938 * 299.99938 * 6 5 4 27 27 H 1.09001 * 109.47194 * 299.99575 * 7 6 5 28 28 H 1.08992 * 109.47399 * 59.99748 * 7 6 5 29 29 H 0.97000 * 120.00354 * 180.02562 * 11 10 8 30 30 H 1.08003 * 120.01377 * 180.27614 * 18 16 4 31 31 H 0.97002 * 120.00511 * 359.97438 * 20 19 2 32 32 H 0.97005 * 120.00619 * 179.97438 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1965 0.0000 4 6 3.5842 1.1972 0.0005 5 8 4.2634 2.3758 0.0011 6 6 3.4841 3.5736 0.0016 7 6 4.4152 4.7877 0.0015 8 6 3.5934 6.0509 0.0014 9 1 2.5149 5.9935 0.0019 10 6 4.2183 7.2799 0.0019 11 7 5.5316 7.3499 0.0018 12 14 3.1996 8.8458 0.0011 13 1 1.7561 8.4972 0.0006 14 1 3.5157 9.6425 1.2138 15 1 3.5174 9.6423 -1.2113 16 6 4.2796 -0.0043 -0.0047 17 17 6.0155 -0.0025 -0.0108 18 6 3.5900 -1.2017 0.0001 19 6 2.2012 -1.2024 0.0005 20 7 1.5018 -2.4144 0.0005 21 1 -0.3633 0.0001 -1.0276 22 1 -0.3633 -0.8901 0.5138 23 1 -0.3633 0.8899 0.5139 24 1 1.6576 2.1316 -0.0004 25 1 2.8552 3.5976 0.8916 26 1 2.8553 3.5983 -0.8884 27 1 5.0443 4.7632 0.8913 28 1 5.0437 4.7635 -0.8886 29 1 5.9713 8.2145 0.0025 30 1 4.1307 -2.1366 0.0005 31 1 0.5318 -2.4147 0.0005 32 1 1.9870 -3.2544 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308790111.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:13 Heat of formation + Delta-G solvation = -56.184106 kcal Electronic energy + Delta-G solvation = -16080.276442 eV Core-core repulsion = 13258.405553 eV Total energy + Delta-G solvation = -2821.870889 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.17737 -39.07772 -37.47219 -35.55782 -34.61017 -33.37953 -32.12880 -29.23442 -27.85358 -26.61701 -24.06152 -22.34452 -22.22454 -19.13514 -18.31701 -18.15420 -17.64541 -16.92137 -16.55395 -16.01336 -15.26343 -15.03370 -14.82966 -14.44756 -14.29908 -14.03619 -13.83254 -13.38436 -13.11124 -12.75885 -12.64457 -12.55905 -12.45607 -12.12369 -11.79454 -11.78093 -11.55478 -11.34757 -10.66249 -10.53889 -9.68476 -8.24389 -8.10501 -6.38107 0.14683 0.56495 1.24774 1.42142 1.43324 1.56724 2.30371 2.54690 2.68857 3.07045 3.10133 3.79568 3.91785 4.11626 4.31747 4.33590 4.44499 4.63063 4.74454 4.80972 4.83891 4.92815 5.02334 5.25201 5.35950 5.44607 5.50688 5.63639 5.74532 6.09105 6.49808 6.63570 6.77289 7.07248 7.32068 8.89088 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.026041 B = 0.004882 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.957731 B = 5734.496130 C = 6783.700305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.122 4.122 3 C -0.161 4.161 4 C 0.062 3.938 5 O -0.333 6.333 6 C 0.086 3.914 7 C 0.029 3.971 8 C -0.543 4.543 9 H 0.072 0.928 10 C 0.001 3.999 11 N -0.932 5.932 12 Si 0.976 3.024 13 H -0.256 1.256 14 H -0.278 1.278 15 H -0.278 1.278 16 C -0.047 4.047 17 Cl -0.073 7.073 18 C -0.152 4.152 19 C 0.193 3.807 20 N -0.861 5.861 21 H 0.081 0.919 22 H 0.085 0.915 23 H 0.071 0.929 24 H 0.138 0.862 25 H 0.059 0.941 26 H 0.059 0.941 27 H -0.004 1.004 28 H -0.004 1.004 29 H 0.266 0.734 30 H 0.156 0.844 31 H 0.409 0.591 32 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.155 -20.173 -0.022 23.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.127 4.127 3 C -0.181 4.181 4 C 0.014 3.986 5 O -0.248 6.248 6 C 0.011 3.989 7 C -0.008 4.008 8 C -0.581 4.581 9 H 0.090 0.910 10 C -0.197 4.197 11 N -0.572 5.572 12 Si 0.800 3.200 13 H -0.179 1.179 14 H -0.203 1.203 15 H -0.203 1.203 16 C -0.075 4.075 17 Cl -0.045 7.045 18 C -0.175 4.175 19 C 0.087 3.913 20 N -0.405 5.405 21 H 0.099 0.901 22 H 0.103 0.897 23 H 0.089 0.911 24 H 0.156 0.844 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.014 0.986 28 H 0.014 0.986 29 H 0.075 0.925 30 H 0.174 0.826 31 H 0.240 0.760 32 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -10.648 -19.989 -0.022 22.648 hybrid contribution 0.186 0.871 0.003 0.890 sum -10.462 -19.118 -0.020 21.794 Atomic orbital electron populations 1.20716 0.88367 1.03845 1.03288 1.19577 0.97739 0.90368 1.04983 1.21096 0.91432 0.99944 1.05593 1.18924 0.91398 0.85583 1.02647 1.86168 1.36925 1.12799 1.88883 1.22828 0.94321 0.81392 1.00344 1.18942 0.94929 0.91102 0.95810 1.21438 0.93796 0.91012 1.51877 0.90981 1.26050 0.96161 1.03333 0.94198 1.70139 1.10010 1.26212 1.50796 0.85233 0.79100 0.77885 0.77804 1.17949 1.20316 1.20312 1.20092 0.84429 0.92549 1.10427 1.98340 1.10111 1.98912 1.97115 1.20368 0.92639 0.96237 1.08306 1.17281 0.89976 0.87507 0.96498 1.42340 1.09351 1.03755 1.85083 0.90062 0.89660 0.91051 0.84444 0.92240 0.92253 0.98566 0.98566 0.92519 0.82625 0.75976 0.76180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.62 9.57 71.24 0.68 -0.94 16 2 C -0.12 -2.83 5.90 -19.74 -0.12 -2.94 16 3 C -0.16 -4.90 8.69 22.35 0.19 -4.70 16 4 C 0.06 2.26 6.68 22.51 0.15 2.41 16 5 O -0.33 -14.73 9.59 -93.87 -0.90 -15.63 16 6 C 0.09 3.83 4.68 71.98 0.34 4.17 16 7 C 0.03 1.65 5.34 29.85 0.16 1.81 16 8 C -0.54 -31.02 9.11 25.60 0.23 -30.78 16 9 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 10 C 0.00 0.05 5.46 84.66 0.46 0.51 16 11 N -0.93 -57.62 13.29 21.45 0.28 -57.34 16 12 Si 0.98 43.82 29.54 68.60 2.03 45.85 16 13 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 14 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 15 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 16 C -0.05 -1.53 6.33 22.40 0.14 -1.38 16 17 Cl -0.07 -2.44 28.50 -2.72 -0.08 -2.52 16 18 C -0.15 -3.71 9.67 22.41 0.22 -3.49 16 19 C 0.19 4.03 6.74 38.14 0.26 4.29 16 20 N -0.86 -10.24 9.00 -51.27 -0.46 -10.71 16 21 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 22 H 0.08 0.87 6.54 -2.38 -0.02 0.86 16 23 H 0.07 1.12 8.09 -2.39 -0.02 1.10 16 24 H 0.14 4.08 6.29 -2.91 -0.02 4.06 16 25 H 0.06 2.49 7.66 -2.39 -0.02 2.47 16 26 H 0.06 2.48 7.66 -2.39 -0.02 2.46 16 27 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 28 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 29 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 30 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 31 H 0.41 3.25 6.82 -92.71 -0.63 2.62 16 32 H 0.41 3.24 8.84 -92.70 -0.82 2.42 16 Total: -1.00 -69.83 289.82 3.29 -66.54 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -0.30 Total: 4.85 kcal Atomic # 6 Polarization: -33.77 SS G_CDS: 2.72 Total: -31.05 kcal Atomic # 7 Polarization: -67.87 SS G_CDS: -0.18 Total: -68.04 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.90 Total: -15.63 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 17 Polarization: -2.44 SS G_CDS: -0.08 Total: -2.52 kcal Total: -69.83 3.29 -66.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308790111.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.354 kcal (2) G-P(sol) polarization free energy of solvation -69.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds