Wall clock time and date at job start Mon Mar 30 2020 06:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 120.00002 * 2 1 4 4 H 1.48501 * 109.46896 * 270.00219 * 3 2 1 5 5 H 1.48501 * 109.47275 * 30.00259 * 3 2 1 6 6 H 1.48499 * 109.47039 * 150.00059 * 3 2 1 7 7 C 1.38735 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00253 * 359.97438 * 7 2 1 9 9 N 1.36837 * 119.99901 * 179.97438 * 7 2 1 10 10 C 1.39415 * 119.99934 * 180.02562 * 9 7 2 11 11 C 1.39013 * 120.04291 * 359.45064 * 10 9 7 12 12 C 1.38521 * 120.01710 * 179.68751 * 11 10 9 13 13 C 1.39122 * 119.92880 * 0.46950 * 12 11 10 14 14 C 1.38767 * 119.96566 * 359.90007 * 13 12 11 15 15 C 1.38154 * 120.17593 * 359.84849 * 14 13 12 16 16 Cl 1.73604 * 120.00123 * 180.02562 * 15 14 13 17 17 O 1.36174 * 120.73062 * 180.14562 * 13 12 11 18 18 C 1.43153 * 116.72309 * 342.71706 * 17 13 12 19 19 C 1.53472 * 108.26450 * 46.22328 * 18 17 13 20 20 O 1.36143 * 119.31087 * 180.13592 * 12 11 10 21 21 H 0.97000 * 119.99622 * 359.97438 * 1 2 3 22 22 H 0.96996 * 119.99743 * 359.72569 * 9 7 2 23 23 H 1.08003 * 119.99360 * 359.97438 * 11 10 9 24 24 H 1.07996 * 119.90664 * 179.86271 * 14 13 12 25 25 H 1.09007 * 109.70507 * 286.53110 * 18 17 13 26 26 H 1.08998 * 109.70833 * 165.91954 * 18 17 13 27 27 H 1.08999 * 109.71272 * 180.52978 * 19 18 17 28 28 H 1.08999 * 109.70679 * 59.90007 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4402 0.7000 7 6 2.0100 -1.2015 -0.0005 8 1 1.4700 -2.1368 -0.0005 9 7 3.3784 -1.2015 -0.0011 10 6 4.0754 -2.4089 -0.0021 11 6 3.3813 -3.6133 0.0089 12 6 4.0743 -4.8126 0.0012 13 6 5.4655 -4.8103 -0.0076 14 6 6.1567 -3.6070 -0.0108 15 6 5.4669 -2.4100 -0.0084 16 17 6.3361 -0.9072 -0.0131 17 8 6.1633 -5.9797 -0.0181 18 6 5.4471 -7.1600 0.3601 19 6 4.0992 -7.1607 -0.3738 20 8 3.3800 -5.9836 0.0094 21 1 -0.4849 0.8401 0.0004 22 1 3.8633 -0.3615 -0.0051 23 1 2.3013 -3.6139 0.0187 24 1 7.2366 -3.6063 -0.0154 25 1 5.2791 -7.1587 1.4372 26 1 6.0196 -8.0436 0.0781 27 1 3.5292 -8.0470 -0.0950 28 1 4.2672 -7.1547 -1.4508 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308854827.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:32 Heat of formation + Delta-G solvation = -64.937176 kcal Electronic energy + Delta-G solvation = -16475.238690 eV Core-core repulsion = 13517.155145 eV Total energy + Delta-G solvation = -2958.083545 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.98665 -39.58114 -38.03345 -37.26423 -36.38056 -33.98447 -31.64063 -30.82427 -28.96277 -26.31148 -25.30278 -23.46887 -21.67434 -20.36422 -19.57789 -18.53471 -17.90231 -17.20247 -16.47152 -16.34221 -15.80935 -15.54267 -15.22769 -14.93732 -14.71017 -14.50132 -14.26449 -13.98292 -13.31666 -13.09019 -12.97101 -12.54129 -12.33222 -12.05725 -11.86412 -11.79312 -11.26816 -11.24748 -10.49461 -9.34580 -8.49277 -8.45125 -5.83543 0.31489 0.56580 1.25027 1.27568 1.29550 1.33567 2.14111 2.17167 2.51060 2.66779 3.06793 3.13320 3.49645 3.83385 4.08293 4.15075 4.21408 4.54765 4.59064 4.69701 4.79272 4.98551 5.18954 5.27979 5.34703 5.60674 5.86170 6.07973 6.54662 6.63136 7.22341 7.30760 8.65405 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.026197 B = 0.007299 C = 0.005749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.554903 B = 3835.132266 C = 4869.183934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.934 3.066 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.250 1.250 7 C -0.311 4.311 8 H 0.091 0.909 9 N -0.592 5.592 10 C 0.218 3.782 11 C -0.225 4.225 12 C 0.116 3.884 13 C -0.047 4.047 14 C -0.037 4.037 15 C -0.151 4.151 16 Cl -0.077 7.077 17 O -0.320 6.320 18 C 0.019 3.981 19 C 0.012 3.988 20 O -0.328 6.328 21 H 0.280 0.720 22 H 0.388 0.612 23 H 0.118 0.882 24 H 0.156 0.844 25 H 0.073 0.927 26 H 0.156 0.844 27 H 0.152 0.848 28 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.196 -10.223 -0.051 15.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.207 4.207 3 Si 0.756 3.244 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.174 1.174 7 C -0.440 4.440 8 H 0.108 0.892 9 N -0.202 5.202 10 C 0.101 3.899 11 C -0.250 4.250 12 C 0.070 3.930 13 C -0.094 4.094 14 C -0.056 4.056 15 C -0.184 4.184 16 Cl -0.048 7.048 17 O -0.235 6.235 18 C -0.056 4.056 19 C -0.063 4.063 20 O -0.243 6.243 21 H 0.089 0.911 22 H 0.225 0.775 23 H 0.136 0.864 24 H 0.174 0.826 25 H 0.091 0.909 26 H 0.174 0.826 27 H 0.170 0.830 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.781 -9.929 -0.048 15.407 hybrid contribution -0.175 1.134 0.014 1.147 sum 11.606 -8.795 -0.034 14.562 Atomic orbital electron populations 1.69818 1.07126 1.29049 1.50025 1.25691 0.96276 1.01630 0.97133 0.85759 0.79446 0.79249 0.79943 1.18372 1.19208 1.17417 1.19288 0.80547 0.95976 1.48228 0.89151 1.41069 1.05231 1.04250 1.69701 1.17216 0.89180 0.86669 0.96860 1.19561 0.99558 0.88417 1.17469 1.18569 0.89491 0.86057 0.98890 1.18100 0.88211 0.87156 1.15971 1.19861 1.00319 0.86937 0.98529 1.19655 0.88897 0.87245 1.22644 1.98272 1.75926 1.32807 1.97813 1.86190 1.37915 1.13616 1.85815 1.23836 0.93958 0.87896 0.99919 1.24011 0.94724 0.87036 1.00484 1.86271 1.39438 1.14584 1.84004 0.91069 0.77499 0.86368 0.82600 0.90919 0.82614 0.83028 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.29 13.97 21.64 0.30 -52.99 15 2 C -0.01 -0.39 5.50 84.84 0.47 0.07 15 3 Si 0.93 40.62 27.73 68.60 1.90 42.53 15 4 H -0.26 -10.87 7.11 99.48 0.71 -10.17 15 5 H -0.27 -11.30 7.11 99.48 0.71 -10.59 15 6 H -0.25 -10.16 6.52 99.48 0.65 -9.52 15 7 C -0.31 -17.06 10.04 84.03 0.84 -16.22 15 8 H 0.09 5.37 5.91 -2.91 -0.02 5.35 15 9 N -0.59 -28.59 5.20 -184.25 -0.96 -29.55 15 10 C 0.22 9.77 6.62 38.34 0.25 10.03 15 11 C -0.22 -10.06 9.22 22.52 0.21 -9.85 15 12 C 0.12 4.51 6.49 22.55 0.15 4.65 15 13 C -0.05 -1.65 6.50 22.61 0.15 -1.50 15 14 C -0.04 -1.26 9.73 22.38 0.22 -1.04 15 15 C -0.15 -5.83 6.34 22.47 0.14 -5.68 15 16 Cl -0.08 -2.63 27.59 -2.72 -0.08 -2.70 15 17 O -0.32 -9.28 10.42 -83.33 -0.87 -10.15 15 18 C 0.02 0.38 7.26 72.14 0.52 0.90 15 19 C 0.01 0.26 7.26 72.14 0.52 0.78 15 20 O -0.33 -11.20 10.42 -82.98 -0.86 -12.06 15 21 H 0.28 14.99 8.31 -92.71 -0.77 14.22 15 22 H 0.39 17.63 4.41 -92.71 -0.41 17.22 15 23 H 0.12 5.80 5.95 -2.91 -0.02 5.79 15 24 H 0.16 4.46 8.06 -2.91 -0.02 4.44 15 25 H 0.07 1.43 8.14 -2.38 -0.02 1.41 15 26 H 0.16 1.71 8.14 -2.39 -0.02 1.69 15 27 H 0.15 2.05 8.14 -2.39 -0.02 2.03 15 28 H 0.08 1.62 8.14 -2.39 -0.02 1.60 15 Total: -1.00 -62.97 256.21 3.66 -59.31 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.75 Total: 23.48 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: 3.47 Total: -17.87 kcal Atomic # 7 Polarization: -81.88 SS G_CDS: -0.66 Total: -82.54 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -1.73 Total: -22.21 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 1.90 Total: 42.53 kcal Atomic # 17 Polarization: -2.63 SS G_CDS: -0.08 Total: -2.70 kcal Total: -62.97 3.66 -59.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308854827.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.627 kcal (2) G-P(sol) polarization free energy of solvation -62.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds