Wall clock time and date at job start Mon Mar 30 2020 06:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34719 * 116.99899 * 2 1 4 4 O 1.21473 * 120.00259 * 359.97438 * 3 2 1 5 5 C 1.47664 * 119.99494 * 180.02562 * 3 2 1 6 6 C 1.39534 * 120.12168 * 0.02562 * 5 3 2 7 7 C 1.38744 * 119.76501 * 179.97438 * 6 5 3 8 8 N 1.39372 * 119.99589 * 180.02562 * 7 6 5 9 9 C 1.36846 * 119.99839 * 179.97438 * 8 7 6 10 10 H 1.07997 * 119.99965 * 0.02562 * 9 8 7 11 11 C 1.38782 * 119.99646 * 179.97438 * 9 8 7 12 12 N 1.31603 * 120.00224 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00079 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47344 * 59.99592 * 13 11 9 15 15 H 1.48498 * 109.47694 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47214 * 299.99973 * 13 11 9 17 17 C 1.39235 * 120.01014 * 0.02562 * 7 6 5 18 18 C 1.38093 * 120.23337 * 359.96148 * 17 7 6 19 19 C 1.38227 * 120.24095 * 0.03939 * 18 17 7 20 20 Cl 1.73603 * 120.00785 * 180.25458 * 19 18 17 21 21 H 1.09002 * 109.47368 * 300.00392 * 1 2 3 22 22 H 1.08998 * 109.47356 * 59.99931 * 1 2 3 23 23 H 1.08997 * 109.47629 * 180.02562 * 1 2 3 24 24 H 1.08003 * 120.11579 * 359.95545 * 6 5 3 25 25 H 0.96994 * 119.99567 * 359.97438 * 8 7 6 26 26 H 0.97006 * 119.99962 * 180.02562 * 12 11 9 27 27 H 1.07996 * 119.88110 * 180.02562 * 17 7 6 28 28 H 1.08004 * 119.88026 * 180.02562 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4020 2.2191 -0.0005 5 6 3.5382 1.2775 -0.0006 6 6 4.3005 0.1089 -0.0017 7 6 5.6856 0.1900 -0.0027 8 7 6.4518 -0.9742 -0.0043 9 6 7.8179 -0.8943 -0.0059 10 1 8.3023 0.0710 -0.0055 11 6 8.5808 -2.0536 -0.0070 12 7 7.9905 -3.2298 -0.0070 13 14 10.4456 -1.9446 -0.0084 14 1 10.8999 -1.2172 1.2039 15 1 11.0216 -3.3133 -0.0088 16 1 10.8979 -1.2163 -1.2210 17 6 6.3103 1.4344 -0.0022 18 6 5.5560 2.5911 -0.0014 19 6 4.1755 2.5219 -0.0003 20 17 3.2331 3.9799 -0.0060 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 3.8142 -0.8554 -0.0013 25 1 6.0166 -1.8411 -0.0043 26 1 8.5238 -4.0401 -0.0074 27 1 7.3886 1.4951 -0.0034 28 1 6.0465 3.5533 -0.0014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308914322.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:39 Heat of formation + Delta-G solvation = -73.516480 kcal Electronic energy + Delta-G solvation = -16008.266363 eV Core-core repulsion = 13049.810791 eV Total energy + Delta-G solvation = -2958.455572 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.45859 -39.95752 -37.70377 -37.10724 -36.40442 -33.74833 -32.37293 -29.79460 -28.54417 -26.57970 -24.82726 -23.18757 -21.63088 -19.79103 -18.99611 -18.12162 -17.29726 -17.17401 -16.97245 -16.38931 -15.80693 -14.98999 -14.89994 -14.72503 -14.27040 -13.99240 -13.63826 -13.26262 -13.07446 -12.82813 -12.65567 -12.64048 -12.27387 -12.08728 -11.93412 -11.73339 -11.55614 -10.78800 -10.54050 -9.94024 -8.59340 -8.50773 -5.73751 -0.18054 0.61250 1.46221 1.48218 1.50735 1.55600 1.68860 1.80418 2.27582 2.78371 3.27798 3.29665 3.80991 4.05233 4.34835 4.37887 4.47424 4.57026 4.71591 4.76426 4.98154 5.13475 5.27452 5.34414 5.51542 5.54722 5.75748 6.00813 6.77155 6.78220 7.40217 7.54571 8.66258 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.029103 B = 0.005547 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.876590 B = 5046.999040 C = 5993.729959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.506 3.494 4 O -0.509 6.509 5 C -0.073 4.073 6 C -0.168 4.168 7 C 0.184 3.816 8 N -0.569 5.569 9 C -0.320 4.320 10 H 0.113 0.887 11 C -0.025 4.025 12 N -0.924 5.924 13 Si 0.997 3.003 14 H -0.265 1.265 15 H -0.285 1.285 16 H -0.265 1.265 17 C -0.189 4.189 18 C -0.050 4.050 19 C -0.110 4.110 20 Cl -0.071 7.071 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.131 0.869 24 H 0.134 0.866 25 H 0.396 0.604 26 H 0.277 0.723 27 H 0.134 0.866 28 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.855 5.757 0.008 8.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.279 6.279 3 C 0.352 3.648 4 O -0.398 6.398 5 C -0.076 4.076 6 C -0.193 4.193 7 C 0.064 3.936 8 N -0.171 5.171 9 C -0.449 4.449 10 H 0.131 0.869 11 C -0.225 4.225 12 N -0.562 5.562 13 Si 0.820 3.180 14 H -0.189 1.189 15 H -0.210 1.210 16 H -0.189 1.189 17 C -0.214 4.214 18 C -0.070 4.070 19 C -0.141 4.141 20 Cl -0.042 7.042 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.149 0.851 24 H 0.152 0.848 25 H 0.230 0.770 26 H 0.086 0.914 27 H 0.152 0.848 28 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.809 5.820 0.006 8.958 hybrid contribution 0.279 -0.557 0.001 0.623 sum -6.530 5.263 0.007 8.387 Atomic orbital electron populations 1.23560 0.74390 1.05665 1.02680 1.86576 1.25249 1.32023 1.84058 1.21247 0.89140 0.81651 0.72776 1.90849 1.67030 1.35942 1.46010 1.18492 0.88784 0.93081 1.07225 1.20548 0.91479 0.97494 1.09735 1.18060 0.90384 0.88091 0.97030 1.41067 1.05465 1.04716 1.65848 1.20067 0.81542 0.95362 1.47934 0.86895 1.26171 1.05285 0.94181 0.96833 1.69780 1.38575 0.98315 1.49500 0.84897 0.76200 0.77459 0.79435 1.18941 1.20996 1.18930 1.20767 1.00354 0.90078 1.10238 1.20728 0.90249 0.99101 0.96893 1.20336 0.91881 0.85689 1.16198 1.98305 1.73131 1.35451 1.97297 0.91735 0.91730 0.85080 0.84849 0.77026 0.91419 0.84785 0.83033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.56 113.37 1.20 1.84 15 2 O -0.36 -11.16 9.81 -56.29 -0.55 -11.71 15 3 C 0.51 17.98 7.89 70.31 0.55 18.54 15 4 O -0.51 -19.02 13.75 19.92 0.27 -18.75 15 5 C -0.07 -2.72 5.87 -20.10 -0.12 -2.84 15 6 C -0.17 -6.44 9.46 22.70 0.21 -6.23 15 7 C 0.18 7.61 6.61 38.30 0.25 7.86 15 8 N -0.57 -26.20 5.44 -184.38 -1.00 -27.20 15 9 C -0.32 -15.25 9.55 84.04 0.80 -14.44 15 10 H 0.11 5.01 5.67 -2.91 -0.02 4.99 15 11 C -0.02 -1.19 5.50 84.86 0.47 -0.72 15 12 N -0.92 -47.51 13.05 21.64 0.28 -47.22 15 13 Si 1.00 38.12 29.55 68.60 2.03 40.15 15 14 H -0.26 -9.75 7.11 99.48 0.71 -9.04 15 15 H -0.28 -10.92 7.11 99.48 0.71 -10.21 15 16 H -0.26 -9.74 7.11 99.48 0.71 -9.04 15 17 C -0.19 -7.12 9.30 22.48 0.21 -6.91 15 18 C -0.05 -1.69 9.80 22.23 0.22 -1.47 15 19 C -0.11 -3.96 6.36 22.65 0.14 -3.81 15 20 Cl -0.07 -2.40 26.01 -2.72 -0.07 -2.47 15 21 H 0.06 1.33 8.14 -2.39 -0.02 1.31 15 22 H 0.06 1.33 8.14 -2.39 -0.02 1.31 15 23 H 0.13 1.90 8.14 -2.39 -0.02 1.88 15 24 H 0.13 4.86 7.61 -2.91 -0.02 4.84 15 25 H 0.40 18.84 7.89 -92.71 -0.73 18.11 15 26 H 0.28 13.54 8.31 -92.70 -0.77 12.76 15 27 H 0.13 4.87 5.94 -2.91 -0.02 4.86 15 28 H 0.15 4.16 8.06 -2.91 -0.02 4.14 15 Total: -1.00 -54.86 267.74 5.38 -49.48 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 0.48 Total: 25.91 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 3.94 Total: -8.18 kcal Atomic # 7 Polarization: -73.71 SS G_CDS: -0.72 Total: -74.43 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -0.28 Total: -30.46 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 2.03 Total: 40.15 kcal Atomic # 17 Polarization: -2.40 SS G_CDS: -0.07 Total: -2.47 kcal Total: -54.86 5.38 -49.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308914322.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.039 kcal (2) G-P(sol) polarization free energy of solvation -54.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds