Wall clock time and date at job start Mon Mar 30 2020 06:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00013 * 2 1 4 4 H 1.48504 * 109.46960 * 239.99986 * 3 2 1 5 5 H 1.48498 * 109.47114 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47078 * 120.00216 * 3 2 1 7 7 C 1.37875 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00133 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00104 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47332 * 180.02562 * 10 9 7 12 12 O 1.42893 * 109.47370 * 179.97438 * 11 10 9 13 13 C 1.35915 * 117.00520 * 179.97438 * 12 11 10 14 14 C 1.38790 * 120.00548 * 359.97438 * 13 12 11 15 15 C 1.38201 * 120.10009 * 180.28037 * 14 13 12 16 16 C 1.38234 * 120.11386 * 359.48552 * 15 14 13 17 17 Cl 1.73593 * 119.99133 * 180.26078 * 16 15 14 18 18 C 1.39015 * 120.01208 * 0.51107 * 16 15 14 19 19 N 1.39740 * 120.04896 * 179.76665 * 18 16 15 20 20 C 1.38593 * 120.01135 * 180.02562 * 13 12 11 21 21 H 0.96999 * 120.00005 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46978 * 60.00199 * 9 7 2 23 23 H 1.09000 * 109.47529 * 300.00759 * 9 7 2 24 24 H 1.08998 * 109.46911 * 59.99872 * 10 9 7 25 25 H 1.09008 * 109.46835 * 300.00238 * 10 9 7 26 26 H 1.09001 * 109.47454 * 59.99316 * 11 10 9 27 27 H 1.09008 * 109.46863 * 299.99618 * 11 10 9 28 28 H 1.08002 * 119.94722 * 359.97438 * 14 13 12 29 29 H 1.07996 * 119.94149 * 179.72448 * 15 14 13 30 30 H 0.96999 * 120.00308 * 179.97438 * 19 18 16 31 31 H 0.97002 * 119.99902 * 359.97438 * 19 18 16 32 32 H 1.07995 * 120.05470 * 359.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 8 2.4087 -6.0732 -0.0018 13 6 1.8892 -7.3292 -0.0019 14 6 0.5133 -7.5112 -0.0008 15 6 -0.0170 -8.7874 0.0049 16 6 0.8211 -9.8868 -0.0010 17 17 0.1515 -11.4884 -0.0006 18 6 2.1999 -9.7099 -0.0021 19 7 3.0478 -10.8207 -0.0032 20 6 2.7333 -8.4285 -0.0019 21 1 -0.4850 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6245 -2.5571 0.8896 24 1 2.8718 -3.6044 0.8894 25 1 2.8719 -3.6044 -0.8906 26 1 0.8537 -5.0446 -0.8913 27 1 0.8532 -5.0451 0.8887 28 1 -0.1439 -6.6542 0.0005 29 1 -1.0880 -8.9261 0.0102 30 1 4.0098 -10.6965 -0.0044 31 1 2.6744 -11.7159 -0.0029 32 1 3.8041 -8.2882 -0.0023 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309016785.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:19 Heat of formation + Delta-G solvation = -60.429294 kcal Electronic energy + Delta-G solvation = -15620.402299 eV Core-core repulsion = 12798.347325 eV Total energy + Delta-G solvation = -2822.054974 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.16966 -39.13826 -37.19035 -36.02016 -35.17166 -33.68146 -31.17317 -29.38357 -28.68674 -25.35867 -23.90336 -22.80739 -21.85795 -19.30372 -18.53346 -18.06878 -17.37624 -17.17635 -16.67734 -16.42248 -15.92464 -15.17213 -14.73533 -14.57902 -14.38375 -14.13288 -13.73293 -13.35505 -12.99677 -12.72461 -12.62156 -12.48106 -12.25775 -12.09888 -11.69455 -11.60081 -11.52743 -11.24009 -11.17333 -10.54984 -9.32990 -8.56489 -8.20755 -6.31578 0.28901 0.46525 1.25135 1.42038 1.44751 1.52691 2.12461 2.43184 2.69301 2.94618 3.13128 3.77547 4.06209 4.08088 4.16521 4.25710 4.41737 4.48312 4.74737 4.85149 4.89469 4.93432 5.11956 5.21399 5.36410 5.48522 5.52372 5.68177 5.82316 6.20970 6.33896 6.44480 6.83904 6.85572 7.37618 8.91010 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.061192 B = 0.003146 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.464783 B = 8897.505419 C = 9329.221066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.097 4.097 11 C 0.070 3.930 12 O -0.325 6.325 13 C 0.168 3.832 14 C -0.266 4.266 15 C -0.022 4.022 16 C -0.165 4.165 17 Cl -0.069 7.069 18 C 0.266 3.734 19 N -0.855 5.855 20 C -0.237 4.237 21 H 0.265 0.735 22 H 0.000 1.000 23 H 0.000 1.000 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.137 0.863 29 H 0.151 0.849 30 H 0.413 0.587 31 H 0.408 0.592 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.169 -22.809 0.007 23.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.009 4.009 10 C -0.135 4.135 11 C -0.005 4.005 12 O -0.239 6.239 13 C 0.121 3.879 14 C -0.287 4.287 15 C -0.041 4.041 16 C -0.197 4.197 17 Cl -0.041 7.041 18 C 0.157 3.843 19 N -0.396 5.396 20 C -0.261 4.261 21 H 0.073 0.927 22 H 0.019 0.981 23 H 0.019 0.981 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.154 0.846 29 H 0.169 0.831 30 H 0.244 0.756 31 H 0.239 0.761 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.164 -22.770 0.007 22.989 hybrid contribution 0.038 0.688 0.002 0.689 sum 3.202 -22.081 0.008 22.312 Atomic orbital electron populations 1.70074 1.07706 1.27964 1.51390 1.25951 0.95793 1.03292 0.94613 0.85498 0.78286 0.78077 0.79195 1.19206 1.20778 1.19195 1.21619 0.93647 0.92198 1.50986 0.92114 1.18910 0.94170 0.92130 0.95662 1.21440 0.98830 0.91273 1.01916 1.22924 0.91634 0.84116 1.01783 1.86042 1.37455 1.12654 1.87702 1.19057 0.92292 0.84498 0.92051 1.21180 0.93864 0.98687 1.14934 1.20788 1.00451 0.89652 0.93203 1.20274 0.91512 0.86778 1.21108 1.98312 1.85145 1.22856 1.97741 1.17055 0.88413 0.87881 0.90948 1.42517 1.08635 1.05519 1.82919 1.19750 1.00421 0.88228 1.17720 0.92651 0.98140 0.98149 0.92193 0.92202 0.91515 0.91507 0.84553 0.83110 0.75612 0.76096 0.83657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.94 13.29 21.45 0.28 -55.66 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.97 43.87 29.54 68.60 2.03 45.89 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.55 -30.89 9.11 25.60 0.23 -30.65 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 9 C 0.03 1.47 4.97 29.85 0.15 1.62 16 10 C -0.10 -4.00 5.52 30.59 0.17 -3.83 16 11 C 0.07 2.42 4.74 71.98 0.34 2.76 16 12 O -0.33 -10.81 10.13 -92.60 -0.94 -11.75 16 13 C 0.17 4.86 6.68 22.49 0.15 5.01 16 14 C -0.27 -7.02 9.04 22.39 0.20 -6.82 16 15 C -0.02 -0.49 9.82 22.26 0.22 -0.28 16 16 C -0.17 -3.60 6.34 22.46 0.14 -3.46 16 17 Cl -0.07 -1.25 27.58 -2.72 -0.08 -1.33 16 18 C 0.27 5.61 6.75 38.20 0.26 5.87 16 19 N -0.86 -12.12 9.04 -51.33 -0.46 -12.58 16 20 C -0.24 -5.81 9.83 22.49 0.22 -5.59 16 21 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 22 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 23 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 24 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 25 H 0.06 2.44 8.14 -2.38 -0.02 2.43 16 26 H 0.07 2.21 7.66 -2.39 -0.02 2.19 16 27 H 0.07 2.21 7.66 -2.38 -0.02 2.19 16 28 H 0.14 3.52 6.29 -2.91 -0.02 3.51 16 29 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 30 H 0.41 4.09 8.84 -92.71 -0.82 3.27 16 31 H 0.41 4.91 7.50 -92.71 -0.70 4.21 16 32 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -63.50 291.85 3.01 -60.49 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -0.37 Total: 9.76 kcal Atomic # 6 Polarization: -37.37 SS G_CDS: 2.55 Total: -34.82 kcal Atomic # 7 Polarization: -68.06 SS G_CDS: -0.18 Total: -68.24 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -0.94 Total: -11.75 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -0.08 Total: -1.33 kcal Total: -63.50 3.01 -60.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309016785.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.062 kcal (2) G-P(sol) polarization free energy of solvation -63.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds