Wall clock time and date at job start Mon Mar 30 2020 06:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99752 * 2 1 4 4 H 1.48499 * 109.46957 * 239.99795 * 3 2 1 5 5 H 1.48496 * 109.47122 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47152 * 120.00308 * 3 2 1 7 7 C 1.37879 * 120.00461 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00406 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99596 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.46850 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.47279 * 179.97438 * 10 9 7 12 12 C 1.46897 * 111.00141 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.46867 * 180.02562 * 12 11 10 14 14 C 1.38281 * 119.93825 * 270.02297 * 13 12 11 15 15 C 1.38153 * 120.07452 * 179.70119 * 14 13 12 16 16 C 1.38705 * 119.95485 * 0.55485 * 15 14 13 17 17 O 1.35925 * 120.05905 * 179.72419 * 16 15 14 18 18 C 1.38819 * 119.88283 * 359.44644 * 16 15 14 19 19 Cl 1.73596 * 120.03658 * 180.29848 * 18 16 15 20 20 C 1.38244 * 119.93882 * 89.99990 * 13 12 11 21 21 H 0.96995 * 120.00143 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46863 * 60.00047 * 9 7 2 23 23 H 1.09004 * 109.47263 * 299.99988 * 9 7 2 24 24 H 1.09000 * 109.47408 * 60.00308 * 10 9 7 25 25 H 1.08992 * 109.47517 * 299.99831 * 10 9 7 26 26 H 1.00895 * 110.99894 * 303.95883 * 11 10 9 27 27 H 1.08996 * 109.46877 * 60.00802 * 12 11 10 28 28 H 1.09002 * 109.47482 * 299.99972 * 12 11 10 29 29 H 1.08000 * 119.96106 * 0.02562 * 14 13 12 30 30 H 1.08002 * 120.02241 * 180.29822 * 15 14 13 31 31 H 0.96705 * 113.99587 * 269.72346 * 17 16 15 32 32 H 1.08000 * 119.98283 * 0.04983 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5110 -4.9343 0.0001 12 6 2.4355 -6.0758 -0.0005 13 6 1.6474 -7.3604 -0.0005 14 6 1.2866 -7.9487 1.1978 15 6 0.5589 -9.1230 1.2011 16 6 0.1997 -9.7186 0.0011 17 8 -0.5114 -10.8770 0.0019 18 6 0.5629 -9.1266 -1.2009 19 17 0.1089 -9.8645 -2.7052 20 6 1.2862 -7.9483 -1.1984 21 1 -0.4850 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8897 24 1 2.8720 -3.6043 0.8895 25 1 2.8720 -3.6043 -0.8904 26 1 0.8748 -4.9842 0.7816 27 1 3.0640 -6.0348 0.8891 28 1 3.0629 -6.0349 -0.8909 29 1 1.5695 -7.4868 2.1322 30 1 0.2734 -9.5792 2.1375 31 1 0.0357 -11.6744 0.0019 32 1 1.5696 -7.4871 -2.1330 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379963567.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:49 Heat of formation + Delta-G solvation = -59.374397 kcal Electronic energy + Delta-G solvation = -15597.162505 eV Core-core repulsion = 12775.153274 eV Total energy + Delta-G solvation = -2822.009231 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.88206 -38.41580 -37.50415 -36.92204 -34.99339 -32.45090 -31.83058 -30.16178 -26.83814 -24.95923 -23.93086 -22.50259 -22.25549 -19.50701 -18.50091 -17.46774 -17.20950 -16.53684 -16.43466 -16.23420 -15.58195 -15.13753 -14.79286 -14.43782 -14.16825 -13.93123 -13.68326 -13.18083 -13.11963 -12.79142 -12.52425 -12.40774 -12.34821 -12.09515 -11.88762 -11.52454 -11.39422 -11.26432 -10.55059 -9.89336 -9.60051 -9.24086 -8.19176 -6.30999 0.02598 0.18640 1.11140 1.41581 1.44800 1.52742 2.40173 2.46408 3.12154 3.14328 3.49375 3.74293 3.88495 4.18162 4.24412 4.39179 4.53488 4.59265 4.68935 4.77425 4.88504 5.08135 5.08690 5.19018 5.45358 5.49090 5.67361 5.68916 5.78993 6.12816 6.26545 6.51579 6.73863 6.86727 7.38492 8.92763 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.039946 B = 0.003367 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.770347 B = 8314.331518 C = 8559.243590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.030 3.970 10 C 0.085 3.915 11 N -0.696 5.696 12 C 0.099 3.901 13 C -0.081 4.081 14 C -0.091 4.091 15 C -0.131 4.131 16 C 0.110 3.890 17 O -0.496 6.496 18 C -0.078 4.078 19 Cl -0.065 7.065 20 C -0.085 4.085 21 H 0.264 0.736 22 H -0.008 1.008 23 H -0.009 1.009 24 H 0.025 0.975 25 H 0.060 0.940 26 H 0.340 0.660 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.150 0.850 30 H 0.161 0.839 31 H 0.410 0.590 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.386 -22.330 1.600 22.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.081 0.919 9 C -0.008 4.008 10 C -0.044 4.044 11 N -0.327 5.327 12 C -0.029 4.029 13 C -0.082 4.082 14 C -0.110 4.110 15 C -0.150 4.150 16 C 0.065 3.935 17 O -0.309 6.309 18 C -0.105 4.105 19 Cl -0.036 7.036 20 C -0.105 4.105 21 H 0.072 0.928 22 H 0.010 0.990 23 H 0.010 0.990 24 H 0.044 0.956 25 H 0.079 0.921 26 H 0.157 0.843 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.168 0.832 30 H 0.179 0.821 31 H 0.270 0.730 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.649 -21.933 0.772 22.248 hybrid contribution 0.634 0.634 0.516 1.035 sum 4.283 -21.299 1.288 21.764 Atomic orbital electron populations 1.70106 1.07894 1.27864 1.51408 1.25994 0.95746 1.03446 0.94640 0.85471 0.78219 0.77922 0.79246 1.19150 1.20971 1.18985 1.21605 0.93631 0.92192 1.50947 0.91894 1.18935 0.94396 0.92427 0.95013 1.21791 0.95533 0.87893 0.99176 1.60520 1.20246 1.01530 1.50425 1.20895 0.93208 0.86521 1.02255 1.19835 0.99467 0.96129 0.92798 1.21326 0.96491 0.94818 0.98346 1.21580 0.98522 0.96959 0.97904 1.18305 0.94597 0.89987 0.90658 1.84813 1.35328 1.14594 1.96197 1.21522 1.03732 0.97946 0.87320 1.98358 1.91522 1.82215 1.31506 1.20965 0.96888 0.93151 0.99469 0.92772 0.98975 0.99025 0.95635 0.92104 0.84260 0.92799 0.89995 0.83213 0.82137 0.73022 0.84720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 3 Si 0.97 44.09 29.54 68.60 2.03 46.11 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.55 -31.00 9.11 25.60 0.23 -30.76 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.03 1.58 5.23 29.85 0.16 1.74 16 10 C 0.08 3.45 5.62 86.30 0.49 3.93 16 11 N -0.70 -23.77 6.49 -517.94 -3.36 -27.13 16 12 C 0.10 2.56 5.81 85.56 0.50 3.05 16 13 C -0.08 -1.89 5.39 -19.85 -0.11 -2.00 16 14 C -0.09 -1.76 9.69 22.26 0.22 -1.54 16 15 C -0.13 -2.33 9.99 22.36 0.22 -2.10 16 16 C 0.11 2.24 6.70 22.52 0.15 2.39 16 17 O -0.50 -8.57 12.96 -92.70 -1.20 -9.77 16 18 C -0.08 -1.80 6.33 22.41 0.14 -1.66 16 19 Cl -0.06 -1.45 28.50 -2.72 -0.08 -1.53 16 20 C -0.09 -2.07 9.48 22.28 0.21 -1.86 16 21 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 22 H -0.01 -0.49 8.14 -2.39 -0.02 -0.50 16 23 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 24 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 26 H 0.34 11.37 8.72 -89.70 -0.78 10.59 16 27 H 0.05 1.23 8.08 -2.39 -0.02 1.21 16 28 H 0.08 2.06 8.08 -2.39 -0.02 2.04 16 29 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 30 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 31 H 0.41 3.08 9.06 -74.05 -0.67 2.41 16 32 H 0.13 3.27 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -67.51 297.67 0.03 -67.48 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -0.31 Total: 10.20 kcal Atomic # 6 Polarization: -31.04 SS G_CDS: 2.67 Total: -28.37 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -3.08 Total: -84.14 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -1.20 Total: -9.77 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.08 Total: -1.53 kcal Total: -67.51 0.03 -67.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379963567.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.109 kcal (2) G-P(sol) polarization free energy of solvation -67.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds