Wall clock time and date at job start Mon Mar 30 2020 06:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00026 * 2 1 4 4 H 1.48498 * 109.47473 * 239.99647 * 3 2 1 5 5 H 1.48502 * 109.47250 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47209 * 119.99549 * 3 2 1 7 7 C 1.37879 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00360 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99897 * 0.02562 * 7 2 1 10 10 O 1.42894 * 109.47254 * 180.02562 * 9 7 2 11 11 C 1.42903 * 114.00108 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47256 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.47035 * 64.99491 * 12 11 10 14 14 C 1.39745 * 119.99755 * 180.02562 * 13 12 11 15 15 C 1.38897 * 120.06235 * 359.72509 * 14 13 12 16 16 C 1.38106 * 119.93416 * 179.72390 * 15 14 13 17 17 C 1.38377 * 120.06585 * 0.54982 * 16 15 14 18 18 Cl 1.73598 * 119.94188 * 179.70151 * 17 16 15 19 19 C 1.38380 * 120.12061 * 359.72820 * 17 16 15 20 20 C 1.38114 * 120.06313 * 359.97438 * 19 17 16 21 21 H 0.96995 * 119.99970 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47168 * 59.99897 * 9 7 2 23 23 H 1.09009 * 109.47177 * 299.99994 * 9 7 2 24 24 H 1.08997 * 109.47286 * 59.99841 * 11 10 9 25 25 H 1.09005 * 109.46914 * 299.99505 * 11 10 9 26 26 H 1.09004 * 109.46930 * 304.99721 * 12 11 10 27 27 H 1.09000 * 109.47312 * 184.99665 * 12 11 10 28 28 H 0.96999 * 120.00080 * 0.02562 * 13 12 11 29 29 H 1.07998 * 120.02939 * 359.97438 * 15 14 13 30 30 H 1.08005 * 119.96724 * 180.25874 * 16 15 14 31 31 H 1.07999 * 119.96832 * 179.97438 * 19 17 16 32 32 H 1.07994 * 120.03195 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 2.1797 -3.5852 0.0017 11 6 1.5651 -4.8754 0.0013 12 6 2.6481 -5.9562 0.0020 13 7 3.4053 -5.8879 1.2543 14 6 4.4542 -6.7817 1.4862 15 6 4.7762 -7.7390 0.5327 16 6 5.8170 -8.6174 0.7621 17 6 6.5314 -8.5518 1.9454 18 17 7.8341 -9.6625 2.2338 19 6 6.2090 -7.6028 2.8996 20 6 5.1731 -6.7179 2.6729 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8904 24 1 0.9460 -4.9826 -0.8893 25 1 0.9440 -4.9823 0.8907 26 1 3.3222 -5.7956 -0.8394 27 1 2.1822 -6.9375 -0.0879 28 1 3.1786 -5.2223 1.9225 29 1 4.2159 -7.7938 -0.3889 30 1 6.0706 -9.3592 0.0193 31 1 6.7680 -7.5541 3.8224 32 1 4.9217 -5.9778 3.4180 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385189233.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:11 Heat of formation + Delta-G solvation = -38.092200 kcal Electronic energy + Delta-G solvation = -15580.224986 eV Core-core repulsion = 12759.138620 eV Total energy + Delta-G solvation = -2821.086365 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.50408 -37.31005 -36.46417 -34.99203 -32.79383 -31.14333 -30.36215 -27.75593 -26.65482 -23.45012 -22.43499 -22.13414 -21.12335 -17.68217 -16.65047 -16.31647 -15.95558 -15.82557 -14.84317 -14.50199 -14.31272 -13.88935 -13.80489 -13.52619 -13.11815 -13.00583 -12.18151 -11.90418 -11.72971 -11.51516 -11.33828 -10.92858 -10.85584 -10.78593 -10.70627 -10.12895 -9.79636 -9.22637 -9.07891 -8.96816 -8.30817 -7.33938 -6.19017 -4.21563 1.30735 1.40721 2.25458 3.27385 3.30458 3.34083 3.49400 3.73717 4.26211 4.66840 4.76259 4.86863 5.17600 5.20214 5.27191 5.37604 5.45015 5.55802 5.83530 5.86550 5.91054 6.03121 6.12715 6.23159 6.32074 6.64687 6.95526 7.29341 7.33018 7.69973 7.79284 8.04052 8.42405 8.90508 9.43792 10.92316 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.038059 B = 0.003277 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.524141 B = 8542.024252 C = 9014.847133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.909 3.091 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.066 0.934 9 C 0.196 3.804 10 O -0.394 6.394 11 C 0.049 3.951 12 C 0.126 3.874 13 N -0.729 5.729 14 C 0.232 3.768 15 C -0.194 4.194 16 C -0.059 4.059 17 C -0.104 4.104 18 Cl -0.091 7.091 19 C -0.059 4.059 20 C -0.189 4.189 21 H 0.266 0.734 22 H 0.006 0.994 23 H 0.006 0.994 24 H 0.055 0.945 25 H 0.044 0.956 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.408 0.592 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.660 -17.109 3.286 19.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.122 3.878 10 O -0.314 6.314 11 C -0.029 4.029 12 C 0.002 3.998 13 N -0.356 5.356 14 C 0.125 3.875 15 C -0.217 4.217 16 C -0.078 4.078 17 C -0.133 4.133 18 Cl -0.063 7.063 19 C -0.079 4.079 20 C -0.212 4.212 21 H 0.075 0.925 22 H 0.024 0.976 23 H 0.023 0.977 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.244 0.756 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.666 -17.039 3.105 19.366 hybrid contribution 0.006 1.071 0.221 1.094 sum 8.672 -15.967 3.326 18.472 Atomic orbital electron populations 1.69944 1.06127 1.27424 1.50212 1.24951 0.94992 0.99499 0.94981 0.86378 0.79313 0.81778 0.78916 1.19952 1.21100 1.19968 1.20998 0.94035 0.89303 1.51320 0.91580 1.20224 0.88681 0.83452 0.95485 1.87898 1.35494 1.12745 1.95223 1.22473 0.94228 0.85874 1.00351 1.21472 0.93823 0.97580 0.86906 1.44847 1.33835 1.36093 1.20874 1.17988 0.87473 0.88955 0.93051 1.20582 1.01717 0.98785 1.00616 1.20727 0.93859 0.98066 0.95195 1.20522 0.96342 0.98251 0.98167 1.98327 1.49142 1.62506 1.96311 1.20714 0.96113 0.93001 0.98034 1.20568 0.99385 1.03354 0.97939 0.92495 0.97591 0.97658 0.92720 0.93783 0.91363 0.91394 0.75572 0.85314 0.85437 0.85375 0.85283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.52 -14.89 9.43 -34.44 -0.32 -15.22 16 8 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 9 C 0.20 5.14 5.69 36.00 0.20 5.35 16 10 O -0.39 -8.83 10.27 -35.23 -0.36 -9.19 16 11 C 0.05 0.80 6.07 37.16 0.23 1.03 16 12 C 0.13 1.68 5.30 -4.04 -0.02 1.66 16 13 N -0.73 -9.92 5.68 -58.61 -0.33 -10.25 16 14 C 0.23 2.99 6.65 -83.76 -0.56 2.43 16 15 C -0.19 -2.29 9.31 -39.39 -0.37 -2.66 16 16 C -0.06 -0.66 9.82 -39.58 -0.39 -1.05 16 17 C -0.10 -1.21 6.32 -39.48 -0.25 -1.46 16 18 Cl -0.09 -0.98 28.95 -51.86 -1.50 -2.48 16 19 C -0.06 -0.67 9.82 -39.57 -0.39 -1.06 16 20 C -0.19 -2.27 9.90 -39.38 -0.39 -2.66 16 21 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 22 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 23 H 0.01 0.15 8.14 -51.92 -0.42 -0.27 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.94 7.96 -51.93 -0.41 0.52 16 27 H 0.07 0.73 7.94 -51.93 -0.41 0.32 16 28 H 0.41 5.75 8.49 -40.82 -0.35 5.40 16 29 H 0.13 1.35 6.73 -52.49 -0.35 1.00 16 30 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 32 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 296.81 15.07 4.47 4.47 Total: -1.00 -30.06 296.81 -8.39 -38.45 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -4.03 Total: 0.25 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -2.35 Total: -12.11 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.40 Total: -35.86 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.36 Total: -9.19 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.50 Total: -2.48 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.06 -8.39 -38.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385189233.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.359 kcal (2) G-P(sol) polarization free energy of solvation -30.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds