Wall clock time and date at job start Mon Mar 30 2020 06:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00026 * 2 1 4 4 H 1.48498 * 109.47473 * 239.99647 * 3 2 1 5 5 H 1.48502 * 109.47250 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47209 * 119.99549 * 3 2 1 7 7 C 1.37879 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00360 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99897 * 0.02562 * 7 2 1 10 10 O 1.42894 * 109.47254 * 180.02562 * 9 7 2 11 11 C 1.42903 * 114.00108 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47256 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.47035 * 64.99491 * 12 11 10 14 14 C 1.39745 * 119.99755 * 180.02562 * 13 12 11 15 15 C 1.38897 * 120.06235 * 359.72509 * 14 13 12 16 16 C 1.38106 * 119.93416 * 179.72390 * 15 14 13 17 17 C 1.38377 * 120.06585 * 0.54982 * 16 15 14 18 18 Cl 1.73598 * 119.94188 * 179.70151 * 17 16 15 19 19 C 1.38380 * 120.12061 * 359.72820 * 17 16 15 20 20 C 1.38114 * 120.06313 * 359.97438 * 19 17 16 21 21 H 0.96995 * 119.99970 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47168 * 59.99897 * 9 7 2 23 23 H 1.09009 * 109.47177 * 299.99994 * 9 7 2 24 24 H 1.08997 * 109.47286 * 59.99841 * 11 10 9 25 25 H 1.09005 * 109.46914 * 299.99505 * 11 10 9 26 26 H 1.09004 * 109.46930 * 304.99721 * 12 11 10 27 27 H 1.09000 * 109.47312 * 184.99665 * 12 11 10 28 28 H 0.96999 * 120.00080 * 0.02562 * 13 12 11 29 29 H 1.07998 * 120.02939 * 359.97438 * 15 14 13 30 30 H 1.08005 * 119.96724 * 180.25874 * 16 15 14 31 31 H 1.07999 * 119.96832 * 179.97438 * 19 17 16 32 32 H 1.07994 * 120.03195 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 2.1797 -3.5852 0.0017 11 6 1.5651 -4.8754 0.0013 12 6 2.6481 -5.9562 0.0020 13 7 3.4053 -5.8879 1.2543 14 6 4.4542 -6.7817 1.4862 15 6 4.7762 -7.7390 0.5327 16 6 5.8170 -8.6174 0.7621 17 6 6.5314 -8.5518 1.9454 18 17 7.8341 -9.6625 2.2338 19 6 6.2090 -7.6028 2.8996 20 6 5.1731 -6.7179 2.6729 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8904 24 1 0.9460 -4.9826 -0.8893 25 1 0.9440 -4.9823 0.8907 26 1 3.3222 -5.7956 -0.8394 27 1 2.1822 -6.9375 -0.0879 28 1 3.1786 -5.2223 1.9225 29 1 4.2159 -7.7938 -0.3889 30 1 6.0706 -9.3592 0.0193 31 1 6.7680 -7.5541 3.8224 32 1 4.9217 -5.9778 3.4180 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385189233.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:11 Heat of formation + Delta-G solvation = -56.223379 kcal Electronic energy + Delta-G solvation = -15581.011212 eV Core-core repulsion = 12759.138620 eV Total energy + Delta-G solvation = -2821.872592 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.43295 -38.82089 -37.45132 -36.13734 -34.87299 -32.06818 -31.53664 -29.40746 -28.09655 -24.69741 -24.29742 -23.15204 -22.15049 -18.77961 -18.50090 -17.54849 -17.37158 -17.06435 -16.48350 -16.06831 -15.36524 -15.08276 -15.01413 -14.68751 -14.34729 -14.08678 -13.68546 -13.37278 -12.98932 -12.90606 -12.67297 -12.49358 -12.35282 -12.28504 -11.93558 -11.60461 -11.33038 -10.90912 -10.72606 -10.28028 -9.95964 -8.34531 -8.30414 -6.46701 0.42418 0.48982 1.37616 1.39460 1.43178 1.51764 2.32457 2.47593 2.83086 2.99827 3.12286 3.89190 4.02440 4.03921 4.21932 4.40627 4.47817 4.56793 4.65298 4.68189 4.79500 4.91189 5.05158 5.15545 5.19756 5.32680 5.43232 5.52281 5.75580 5.93450 6.34508 6.49979 6.73569 6.78589 7.25356 8.77336 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.038059 B = 0.003277 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.524141 B = 8542.024252 C = 9014.847133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.980 3.020 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.550 4.550 8 H 0.060 0.940 9 C 0.210 3.790 10 O -0.407 6.407 11 C 0.041 3.959 12 C 0.136 3.864 13 N -0.739 5.739 14 C 0.215 3.785 15 C -0.198 4.198 16 C -0.061 4.061 17 C -0.112 4.112 18 Cl -0.085 7.085 19 C -0.063 4.063 20 C -0.198 4.198 21 H 0.271 0.729 22 H -0.012 1.012 23 H -0.011 1.011 24 H 0.065 0.935 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.101 0.899 28 H 0.403 0.597 29 H 0.142 0.858 30 H 0.146 0.854 31 H 0.144 0.856 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.653 -17.472 3.226 20.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.803 3.197 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.191 1.191 7 C -0.588 4.588 8 H 0.078 0.922 9 C 0.135 3.865 10 O -0.327 6.327 11 C -0.036 4.036 12 C 0.012 3.988 13 N -0.367 5.367 14 C 0.110 3.890 15 C -0.221 4.221 16 C -0.081 4.081 17 C -0.141 4.141 18 Cl -0.056 7.056 19 C -0.082 4.082 20 C -0.221 4.221 21 H 0.080 0.920 22 H 0.006 0.994 23 H 0.006 0.994 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.119 0.881 28 H 0.238 0.762 29 H 0.159 0.841 30 H 0.164 0.836 31 H 0.162 0.838 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 9.673 -17.442 3.044 20.175 hybrid contribution -0.287 1.053 0.256 1.121 sum 9.385 -16.388 3.300 19.172 Atomic orbital electron populations 1.70046 1.07677 1.28749 1.50366 1.25919 0.95936 1.03295 0.93927 0.85275 0.78135 0.76930 0.79346 1.19110 1.20019 1.19076 1.21359 0.94062 0.90978 1.52403 0.92152 1.19812 0.88509 0.84463 0.93699 1.87845 1.35361 1.14213 1.95276 1.22799 0.95740 0.83933 1.01152 1.21433 0.92918 0.97594 0.86805 1.44856 1.34516 1.36491 1.20793 1.18181 0.87670 0.89367 0.93814 1.20783 1.01972 0.98496 1.00859 1.20966 0.93415 0.98198 0.95482 1.20716 0.96551 0.98376 0.98420 1.98329 1.48780 1.62211 1.96293 1.20921 0.95958 0.92661 0.98684 1.20739 0.99566 1.03752 0.98026 0.92004 0.99396 0.99375 0.91655 0.93186 0.91723 0.88127 0.76217 0.84064 0.83592 0.83838 0.84670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.83 13.29 21.45 0.28 -54.54 16 2 C 0.01 0.46 5.46 84.65 0.46 0.92 16 3 Si 0.98 43.67 29.54 68.60 2.03 45.70 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.55 -32.05 9.43 25.60 0.24 -31.81 16 8 H 0.06 3.49 7.81 -2.91 -0.02 3.47 16 9 C 0.21 11.32 5.69 71.23 0.41 11.73 16 10 O -0.41 -18.46 10.27 -148.98 -1.53 -19.99 16 11 C 0.04 1.33 6.07 71.98 0.44 1.76 16 12 C 0.14 3.44 5.30 86.38 0.46 3.89 16 13 N -0.74 -19.53 5.68 -339.36 -1.93 -21.46 16 14 C 0.22 5.31 6.65 38.19 0.25 5.56 16 15 C -0.20 -4.34 9.31 22.40 0.21 -4.13 16 16 C -0.06 -1.25 9.82 22.27 0.22 -1.04 16 17 C -0.11 -2.41 6.32 22.34 0.14 -2.27 16 18 Cl -0.08 -1.67 28.95 -2.72 -0.08 -1.75 16 19 C -0.06 -1.34 9.82 22.27 0.22 -1.12 16 20 C -0.20 -4.57 9.90 22.40 0.22 -4.34 16 21 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 22 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 23 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 24 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 26 H 0.06 1.68 7.96 -2.38 -0.02 1.67 16 27 H 0.10 1.90 7.94 -2.39 -0.02 1.88 16 28 H 0.40 11.33 8.49 -92.71 -0.79 10.54 16 29 H 0.14 2.65 6.73 -2.91 -0.02 2.63 16 30 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 31 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 32 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -63.66 296.81 2.38 -61.28 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.34 Total: 11.60 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: 3.27 Total: -20.84 kcal Atomic # 7 Polarization: -74.36 SS G_CDS: -1.64 Total: -76.00 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -1.53 Total: -19.99 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -0.08 Total: -1.75 kcal Total: -63.66 2.38 -61.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385189233.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.060 kcal (2) G-P(sol) polarization free energy of solvation -63.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds