Wall clock time and date at job start Mon Mar 30 2020 06:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00291 * 2 1 4 4 H 1.48501 * 109.47027 * 269.99776 * 3 2 1 5 5 H 1.48491 * 109.47045 * 29.99793 * 3 2 1 6 6 H 1.48497 * 109.47218 * 149.99999 * 3 2 1 7 7 C 1.37880 * 119.99766 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99857 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00139 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47412 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47197 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46820 * 180.02562 * 11 10 9 13 13 O 1.42899 * 109.46984 * 180.02562 * 12 11 10 14 14 C 1.35930 * 117.00270 * 179.97438 * 13 12 11 15 15 C 1.39155 * 120.45930 * 179.97438 * 14 13 12 16 16 C 1.38495 * 118.39045 * 180.02562 * 15 14 13 17 17 C 1.38411 * 119.20748 * 359.97438 * 16 15 14 18 18 Cl 1.73597 * 119.57288 * 179.97438 * 17 16 15 19 19 N 1.31928 * 120.85231 * 359.97438 * 17 16 15 20 20 C 1.31878 * 121.76150 * 0.02562 * 19 17 16 21 21 H 0.97007 * 119.99641 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47510 * 59.99937 * 9 7 2 23 23 H 1.09002 * 109.47036 * 299.99761 * 9 7 2 24 24 H 1.08999 * 109.46492 * 60.00244 * 10 9 7 25 25 H 1.08994 * 109.47362 * 300.00412 * 10 9 7 26 26 H 1.09002 * 109.46750 * 60.00341 * 11 10 9 27 27 H 1.09002 * 109.47310 * 300.00273 * 11 10 9 28 28 H 1.08991 * 109.47156 * 60.00093 * 12 11 10 29 29 H 1.09002 * 109.47080 * 300.00020 * 12 11 10 30 30 H 1.07997 * 120.80764 * 0.02562 * 15 14 13 31 31 H 1.08001 * 120.39425 * 179.72922 * 16 15 14 32 32 H 1.07994 * 119.64507 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 0.0012 12 6 2.4743 -6.1501 0.0018 13 8 1.7598 -7.3876 0.0018 14 6 2.5000 -8.5277 0.0018 15 6 1.8781 -9.7725 0.0024 16 6 2.6738 -10.9061 0.0029 17 6 4.0507 -10.7649 0.0023 18 17 5.0570 -12.1794 0.0036 19 7 4.6081 -9.5691 0.0008 20 6 3.8852 -8.4662 0.0002 21 1 -0.4850 0.8401 0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8717 -3.6044 0.8906 25 1 2.8718 -3.6044 -0.8893 26 1 0.8531 -5.0451 -0.8886 27 1 0.8536 -5.0446 0.8914 28 1 3.1009 -6.0919 0.8917 29 1 3.1010 -6.0928 -0.8882 30 1 0.8012 -9.8528 0.0024 31 1 2.2252 -11.8885 0.0077 32 1 4.3773 -7.5049 -0.0015 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385352479.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:32 Heat of formation + Delta-G solvation = -33.664081 kcal Electronic energy + Delta-G solvation = -15379.547250 eV Core-core repulsion = 12558.652902 eV Total energy + Delta-G solvation = -2820.894348 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.92025 -38.55411 -36.75806 -34.90787 -32.96103 -32.39281 -30.42588 -28.88038 -25.50179 -24.08580 -23.26663 -21.75787 -20.25314 -18.43308 -17.28512 -17.17264 -16.41558 -16.23987 -14.94455 -14.77036 -14.54595 -14.09669 -13.87118 -13.56680 -13.00538 -12.58721 -12.28644 -11.83650 -11.66209 -11.56826 -11.53411 -11.00831 -10.67511 -10.65437 -10.54500 -10.11080 -9.87849 -9.78205 -9.42613 -9.12742 -8.62125 -8.38816 -6.03783 -4.06596 0.63976 0.82686 1.58006 2.91967 3.29599 3.30308 3.36087 3.39192 4.15307 4.26774 4.42857 4.52778 4.77317 5.00495 5.02094 5.17229 5.32231 5.33914 5.43096 5.57597 5.85400 5.87729 6.06924 6.27137 6.60445 6.75257 6.94896 7.09506 7.37599 7.62348 7.75330 7.95633 8.37307 9.00481 9.57838 11.07537 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.064829 B = 0.002754 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.803512 B =10166.132999 C =10566.886337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.108 4.108 11 C -0.117 4.117 12 C 0.053 3.947 13 O -0.303 6.303 14 C 0.095 3.905 15 C -0.102 4.102 16 C -0.112 4.112 17 C 0.128 3.872 18 Cl -0.037 7.037 19 N -0.442 5.442 20 C 0.034 3.966 21 H 0.261 0.739 22 H 0.017 0.983 23 H 0.017 0.983 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.154 0.846 31 H 0.151 0.849 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.103 -22.325 0.012 22.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.145 4.145 11 C -0.154 4.154 12 C -0.022 4.022 13 O -0.214 6.214 14 C 0.046 3.954 15 C -0.129 4.129 16 C -0.133 4.133 17 C -0.037 4.037 18 Cl -0.009 7.009 19 N -0.153 5.153 20 C -0.125 4.125 21 H 0.071 0.929 22 H 0.035 0.965 23 H 0.036 0.964 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.171 0.829 31 H 0.169 0.831 32 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 5.722 -22.210 0.017 22.935 hybrid contribution -0.116 0.870 -0.010 0.877 sum 5.606 -21.341 0.007 22.065 Atomic orbital electron populations 1.69963 1.06077 1.26668 1.50725 1.25032 0.94860 0.99315 0.95279 0.86589 0.79842 0.83423 0.78127 1.20641 1.21198 1.19862 1.21245 0.93043 0.91059 1.50765 0.92657 1.19087 0.93933 0.91092 0.97436 1.21598 0.99316 0.92943 1.00669 1.21715 0.97961 0.92309 1.03428 1.23272 0.96416 0.80891 1.01577 1.86171 1.35557 1.12619 1.87088 1.20177 0.91517 0.88257 0.95430 1.20960 1.01634 0.88800 1.01459 1.21673 0.91653 1.00196 0.99799 1.21461 0.88730 0.88694 1.04845 1.98393 1.70541 1.35149 1.96827 1.66844 1.40892 0.97342 1.10228 1.22914 0.89720 0.97098 1.02738 0.92950 0.96460 0.96441 0.93016 0.93008 0.91128 0.91132 0.91587 0.91598 0.82851 0.83140 0.81272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.54 9.11 -34.44 -0.31 -14.86 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 10 C -0.11 -2.04 5.15 -26.73 -0.14 -2.18 16 11 C -0.12 -1.82 5.58 -26.73 -0.15 -1.97 16 12 C 0.05 0.66 4.75 37.16 0.18 0.84 16 13 O -0.30 -3.88 10.15 -19.52 -0.20 -4.08 16 14 C 0.10 1.10 6.71 -39.09 -0.26 0.83 16 15 C -0.10 -0.97 10.13 -39.15 -0.40 -1.37 16 16 C -0.11 -0.99 9.87 -39.42 -0.39 -1.38 16 17 C 0.13 1.40 7.27 -17.45 -0.13 1.27 16 18 Cl -0.04 -0.36 29.10 -51.86 -1.51 -1.87 16 19 N -0.44 -5.56 10.33 -10.24 -0.11 -5.66 16 20 C 0.03 0.39 10.22 -17.38 -0.18 0.21 16 21 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.07 0.75 7.68 -51.93 -0.40 0.35 16 29 H 0.07 0.75 7.67 -51.93 -0.40 0.35 16 30 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.17 1.70 6.32 -52.49 -0.33 1.37 16 LS Contribution 295.65 15.07 4.46 4.46 Total: -1.00 -30.52 295.65 -7.71 -38.22 By element: Atomic # 1 Polarization: -0.77 SS G_CDS: -4.05 Total: -4.82 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -2.01 Total: -16.69 kcal Atomic # 7 Polarization: -32.22 SS G_CDS: 0.63 Total: -31.59 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: -0.20 Total: -4.08 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.51 Total: -1.87 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.52 -7.71 -38.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385352479.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.559 kcal (2) G-P(sol) polarization free energy of solvation -30.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds