Wall clock time and date at job start Mon Mar 30 2020 06:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35556 * 116.99969 * 2 1 4 4 N 1.29503 * 124.94036 * 359.97366 * 3 2 1 5 5 C 1.32075 * 116.92256 * 180.02562 * 4 3 2 6 6 C 1.33374 * 114.56042 * 0.02562 * 5 4 3 7 7 C 1.50699 * 125.97000 * 179.97438 * 6 5 4 8 8 H 1.08997 * 110.35501 * 340.68902 * 7 6 5 9 9 C 1.54940 * 110.31016 * 102.83509 * 7 6 5 10 10 C 1.55300 * 100.94415 * 155.35699 * 9 7 6 11 11 C 1.54377 * 102.25502 * 325.86750 * 10 9 7 12 12 H 1.09000 * 109.83189 * 261.84669 * 11 10 9 13 13 C 1.50695 * 109.83610 * 140.86829 * 11 10 9 14 14 H 1.08006 * 119.99951 * 0.41145 * 13 11 10 15 15 C 1.37873 * 120.00566 * 180.41294 * 13 11 10 16 16 N 1.31524 * 119.99732 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00521 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.46970 * 59.99748 * 17 15 13 19 19 H 1.48492 * 109.47239 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46781 * 300.00418 * 17 15 13 21 21 O 1.43245 * 107.58529 * 21.35358 * 11 10 9 22 22 S 1.70964 * 124.93727 * 180.31225 * 3 2 1 23 23 H 1.08997 * 109.46954 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47141 * 299.99849 * 1 2 3 25 25 H 1.08993 * 109.47350 * 59.99749 * 1 2 3 26 26 H 1.08005 * 122.72048 * 179.97438 * 5 4 3 27 27 H 1.09007 * 111.12756 * 37.43650 * 9 7 6 28 28 H 1.09006 * 111.12498 * 273.27785 * 9 7 6 29 29 H 1.09006 * 110.85287 * 207.67375 * 10 9 7 30 30 H 1.09004 * 111.02471 * 84.13526 * 10 9 7 31 31 H 0.96997 * 119.99892 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2078 0.0000 4 7 1.4352 2.3506 -0.0005 5 6 2.1931 3.4323 -0.0009 6 6 3.5047 3.1902 -0.0014 7 6 4.5965 4.2289 -0.0024 8 1 4.2063 5.1888 -0.3408 9 6 5.2092 4.3666 1.4140 10 6 6.6208 4.9166 1.0724 11 6 6.9312 4.2138 -0.2666 12 1 7.5575 3.3396 -0.0889 13 6 7.6358 5.1695 -1.1945 14 1 7.8521 6.1767 -0.8699 15 6 8.0044 4.7584 -2.4579 16 7 7.7405 3.5321 -2.8534 17 14 8.8772 5.9433 -3.6083 18 1 10.1522 6.3858 -2.9889 19 1 9.1624 5.2626 -4.8968 20 1 8.0103 7.1238 -3.8538 21 8 5.6835 3.8087 -0.8421 22 16 3.7376 1.4439 -0.0076 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.7839 4.4318 -0.0018 27 1 5.2744 3.3980 1.9097 28 1 4.6461 5.0779 2.0182 29 1 7.3438 4.6316 1.8368 30 1 6.5988 5.9991 0.9462 31 1 7.9994 3.2429 -3.7423 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389745624.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:33 Heat of formation + Delta-G solvation = -54.991264 kcal Electronic energy + Delta-G solvation = -16548.298974 eV Core-core repulsion = 13728.523517 eV Total energy + Delta-G solvation = -2819.775457 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.18574 -39.99740 -38.77074 -34.75567 -32.74773 -32.23762 -29.43218 -28.62089 -26.49860 -25.11032 -22.75498 -22.03004 -21.29021 -19.69409 -18.57905 -18.19454 -17.28787 -16.78882 -16.59914 -16.19942 -15.89537 -15.32278 -14.73165 -14.69811 -14.10629 -13.87147 -13.65304 -12.91915 -12.77937 -12.61429 -12.53106 -12.40337 -12.21543 -12.16057 -11.95356 -11.55144 -11.09226 -10.88973 -10.63876 -10.28592 -9.87091 -9.34752 -8.10195 -6.31894 -0.21998 -0.12683 0.81531 1.42314 1.44338 1.51953 1.76549 2.41534 2.42989 3.08587 3.37831 3.58063 3.88018 3.90523 4.27165 4.37403 4.40200 4.46714 4.62008 4.67903 4.70579 4.89745 4.95377 4.97751 5.15155 5.23519 5.63390 5.77431 5.86533 6.20827 6.55792 6.59725 7.02972 7.45373 8.96320 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.034980 B = 0.005509 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.257753 B = 5081.287708 C = 5446.267176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.291 6.291 3 C 0.199 3.801 4 N -0.543 5.543 5 C 0.063 3.937 6 C -0.240 4.240 7 C 0.143 3.857 8 H 0.083 0.917 9 C -0.132 4.132 10 C -0.136 4.136 11 C 0.197 3.803 12 H 0.003 0.997 13 C -0.564 4.564 14 H 0.065 0.935 15 C 0.025 3.975 16 N -0.902 5.902 17 Si 0.957 3.043 18 H -0.265 1.265 19 H -0.286 1.286 20 H -0.270 1.270 21 O -0.384 6.384 22 S 0.201 5.799 23 H 0.134 0.866 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.203 0.797 27 H 0.071 0.929 28 H 0.106 0.894 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.016 -2.866 8.169 14.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.198 6.198 3 C -0.116 4.116 4 N -0.275 5.275 5 C -0.086 4.086 6 C -0.362 4.362 7 C 0.083 3.917 8 H 0.100 0.900 9 C -0.170 4.170 10 C -0.174 4.174 11 C 0.141 3.859 12 H 0.021 0.979 13 C -0.601 4.601 14 H 0.083 0.917 15 C -0.177 4.177 16 N -0.540 5.540 17 Si 0.781 3.219 18 H -0.189 1.189 19 H -0.212 1.212 20 H -0.195 1.195 21 O -0.304 6.304 22 S 0.453 5.547 23 H 0.152 0.848 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.220 0.780 27 H 0.089 0.911 28 H 0.124 0.876 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.654 -4.117 7.834 14.634 hybrid contribution -0.017 1.346 -0.805 1.569 sum -11.671 -2.771 7.029 13.903 Atomic orbital electron populations 1.23281 0.74990 1.05499 1.02627 1.86313 1.24850 1.20466 1.88156 1.25475 0.95983 0.89040 1.01102 1.66688 1.39375 0.97357 1.24121 1.21480 0.87757 0.98237 1.01083 1.26018 0.99132 0.96274 1.14766 1.21166 0.86300 0.92521 0.91730 0.89953 1.23244 0.95897 1.02229 0.95605 1.23103 0.96503 1.00875 0.96907 1.20228 0.82455 0.92726 0.90445 0.97878 1.21805 1.38445 0.99253 1.00595 0.91716 1.25915 0.95479 0.96453 0.99879 1.70177 1.46076 1.18533 1.19214 0.85660 0.79264 0.79059 0.77891 1.18930 1.21210 1.19492 1.88764 1.14744 1.79330 1.47577 1.84504 0.98374 1.02177 1.69598 0.84798 0.91858 0.92430 0.78046 0.91074 0.87561 0.90362 0.90796 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.63 113.37 1.21 1.84 16 2 O -0.29 -8.07 10.56 -88.62 -0.94 -9.01 16 3 C 0.20 6.35 8.13 130.59 1.06 7.41 16 4 N -0.54 -17.24 9.88 -318.84 -3.15 -20.39 16 5 C 0.06 1.95 11.24 83.56 0.94 2.89 16 6 C -0.24 -8.44 5.58 24.58 0.14 -8.31 16 7 C 0.14 5.52 3.91 30.51 0.12 5.64 16 8 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 9 C -0.13 -4.27 6.56 32.05 0.21 -4.06 16 10 C -0.14 -5.20 6.53 31.85 0.21 -4.99 16 11 C 0.20 10.06 3.36 30.31 0.10 10.16 16 12 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 13 C -0.56 -31.30 8.75 25.60 0.22 -31.07 16 14 H 0.06 3.42 7.52 -2.91 -0.02 3.40 16 15 C 0.02 1.41 5.41 84.65 0.46 1.87 16 16 N -0.90 -54.93 12.91 21.45 0.28 -54.65 16 17 Si 0.96 43.92 29.54 68.60 2.03 45.95 16 18 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 19 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 O -0.38 -19.68 10.04 -148.98 -1.50 -21.18 16 22 S 0.20 7.01 23.06 -56.49 -1.30 5.71 16 23 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.20 4.90 8.06 -2.91 -0.02 4.87 16 27 H 0.07 2.25 8.05 -2.38 -0.02 2.23 16 28 H 0.11 2.68 8.14 -2.38 -0.02 2.66 16 29 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 30 H 0.07 2.73 7.65 -2.39 -0.02 2.72 16 31 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -68.08 284.00 1.21 -66.87 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: 1.13 Total: 5.34 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: 4.66 Total: -18.63 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: -2.87 Total: -75.04 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -2.43 Total: -30.19 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: 7.01 SS G_CDS: -1.30 Total: 5.71 kcal Total: -68.08 1.21 -66.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389745624.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.877 kcal (2) G-P(sol) polarization free energy of solvation -68.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds