Wall clock time and date at job start Mon Mar 30 2020 06:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35554 * 117.00122 * 2 1 4 4 N 1.29508 * 124.93828 * 0.02777 * 3 2 1 5 5 C 1.32075 * 116.91980 * 179.73113 * 4 3 2 6 6 C 1.33376 * 114.55983 * 0.44849 * 5 4 3 7 7 C 1.50696 * 125.96876 * 179.85622 * 6 5 4 8 8 H 1.09000 * 110.28226 * 24.07613 * 7 6 5 9 9 C 1.55503 * 110.36702 * 261.96373 * 7 6 5 10 10 C 1.55305 * 100.69731 * 204.61043 * 9 7 6 11 11 C 1.54382 * 102.43395 * 34.13038 * 10 9 7 12 12 H 1.09007 * 109.82575 * 98.14672 * 11 10 9 13 13 C 1.50699 * 109.83066 * 219.02306 * 11 10 9 14 14 H 1.08006 * 119.99747 * 0.02562 * 13 11 10 15 15 C 1.37876 * 120.00153 * 180.02562 * 13 11 10 16 16 N 1.31508 * 120.00014 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 119.99940 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47371 * 59.99693 * 17 15 13 19 19 H 1.48502 * 109.47081 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47146 * 299.99363 * 17 15 13 21 21 O 1.43232 * 107.59109 * 338.54226 * 11 10 9 22 22 S 1.70962 * 124.94166 * 179.97438 * 3 2 1 23 23 H 1.08994 * 109.47186 * 299.99868 * 1 2 3 24 24 H 1.08997 * 109.47234 * 60.00108 * 1 2 3 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.08002 * 122.72041 * 180.28897 * 5 4 3 27 27 H 1.08999 * 111.32643 * 86.73983 * 9 7 6 28 28 H 1.08995 * 111.14910 * 322.41405 * 9 7 6 29 29 H 1.09002 * 110.85041 * 275.83884 * 10 9 7 30 30 H 1.09001 * 110.84389 * 152.42021 * 10 9 7 31 31 H 0.97005 * 120.00196 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2078 0.0000 4 7 1.4352 2.3506 0.0005 5 6 2.1931 3.4323 0.0060 6 6 3.5047 3.1902 0.0007 7 6 4.5965 4.2289 0.0019 8 1 4.2281 5.1637 0.4243 9 6 5.1245 4.4607 -1.4422 10 6 6.5538 4.9906 -1.1450 11 6 6.9427 4.2035 0.1248 12 1 7.5580 3.3454 -0.1461 13 6 7.7025 5.0994 1.0689 14 1 7.8939 6.1279 0.8008 15 6 8.1533 4.6059 2.2748 16 7 7.9207 3.3533 2.6011 17 14 9.0944 5.7166 3.4453 18 1 8.2412 6.8707 3.8263 19 1 9.4646 4.9518 4.6633 20 1 10.3253 6.2102 2.7772 21 8 5.7314 3.7584 0.7463 22 16 3.7376 1.4440 0.0006 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.7840 4.4318 0.0114 27 1 4.5295 5.2083 -1.9666 28 1 5.1605 3.5264 -2.0025 29 1 6.5367 6.0624 -0.9471 30 1 7.2315 4.7604 -1.9670 31 1 8.2375 3.0062 3.4497 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389745632.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:38 Heat of formation + Delta-G solvation = -32.687986 kcal Electronic energy + Delta-G solvation = -16544.682692 eV Core-core repulsion = 13725.874378 eV Total energy + Delta-G solvation = -2818.808315 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.91658 -38.41090 -37.45169 -32.74127 -31.11075 -30.64745 -28.12160 -27.23704 -24.87079 -23.61012 -21.25005 -20.28536 -20.03069 -18.34580 -16.89946 -16.50530 -16.14123 -15.15952 -15.04948 -14.72334 -14.33157 -13.84880 -13.51695 -13.02552 -12.55352 -12.27646 -12.03490 -11.77762 -11.35596 -11.08781 -10.89409 -10.84497 -10.64595 -10.45865 -10.27004 -9.94734 -9.52267 -9.26547 -8.88549 -8.54810 -8.15305 -7.88611 -6.00173 -4.14770 1.11421 1.17510 2.14812 3.06646 3.31665 3.36933 3.38554 3.56652 4.41930 4.56448 4.88248 5.17655 5.21527 5.30755 5.39109 5.45375 5.49366 5.71327 5.80604 6.09451 6.18601 6.26306 6.39803 6.53355 6.63951 6.75894 7.02606 7.58340 7.86402 7.87008 8.24308 8.50093 8.99039 9.57302 11.06363 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.034901 B = 0.005525 C = 0.005133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.070612 B = 5067.037155 C = 5453.584705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.284 6.284 3 C 0.185 3.815 4 N -0.537 5.537 5 C 0.048 3.952 6 C -0.220 4.220 7 C 0.150 3.850 8 H 0.078 0.922 9 C -0.147 4.147 10 C -0.145 4.145 11 C 0.205 3.795 12 H 0.041 0.959 13 C -0.547 4.547 14 H 0.060 0.940 15 C 0.080 3.920 16 N -0.862 5.862 17 Si 0.890 3.110 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 O -0.351 6.351 22 S 0.236 5.764 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.098 0.902 26 H 0.174 0.826 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.075 -3.351 -6.842 13.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.191 6.191 3 C -0.129 4.129 4 N -0.269 5.269 5 C -0.101 4.101 6 C -0.342 4.342 7 C 0.089 3.911 8 H 0.095 0.905 9 C -0.185 4.185 10 C -0.183 4.183 11 C 0.150 3.850 12 H 0.059 0.941 13 C -0.585 4.585 14 H 0.078 0.922 15 C -0.126 4.126 16 N -0.498 5.498 17 Si 0.717 3.283 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 O -0.270 6.270 22 S 0.489 5.511 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.116 0.884 26 H 0.191 0.809 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.680 -4.628 -6.518 13.341 hybrid contribution -0.268 1.693 0.612 1.820 sum -10.949 -2.934 -5.906 12.782 Atomic orbital electron populations 1.22931 0.77371 1.02997 1.02509 1.86301 1.22602 1.21462 1.88733 1.25418 0.96544 0.88403 1.02569 1.66583 1.39609 0.97259 1.23398 1.21028 0.88403 0.97150 1.03500 1.26241 0.98958 0.96864 1.12087 1.21089 0.86665 0.91530 0.91841 0.90486 1.23377 0.97704 1.01050 0.96362 1.23226 0.94198 1.01223 0.99604 1.20342 0.83067 0.93371 0.88216 0.94104 1.21335 1.35720 0.97565 1.03849 0.92229 1.25050 0.94860 0.94807 0.97868 1.70012 1.43664 1.13701 1.22392 0.86724 0.80300 0.80857 0.80429 1.20139 1.21189 1.20142 1.88846 1.12721 1.75108 1.50349 1.84488 0.96541 1.01402 1.68690 0.92261 0.92336 0.88395 0.80862 0.91222 0.91456 0.91318 0.91962 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.63 101.05 1.07 1.51 16 2 O -0.28 -4.17 10.56 -18.36 -0.19 -4.37 16 3 C 0.19 3.07 8.13 51.78 0.42 3.49 16 4 N -0.54 -9.01 9.88 -16.01 -0.16 -9.17 16 5 C 0.05 0.79 11.24 -19.15 -0.22 0.57 16 6 C -0.22 -3.95 5.63 -36.01 -0.20 -4.16 16 7 C 0.15 2.95 3.92 -26.55 -0.10 2.84 16 8 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 9 C -0.15 -2.51 6.60 -24.18 -0.16 -2.67 16 10 C -0.14 -2.84 6.51 -24.78 -0.16 -3.00 16 11 C 0.21 5.12 3.35 -27.16 -0.09 5.03 16 12 H 0.04 1.11 8.14 -51.93 -0.42 0.68 16 13 C -0.55 -15.01 8.75 -34.44 -0.30 -15.31 16 14 H 0.06 1.58 7.52 -52.48 -0.39 1.19 16 15 C 0.08 2.25 5.41 -17.82 -0.10 2.16 16 16 N -0.86 -25.41 12.93 55.43 0.72 -24.69 16 17 Si 0.89 21.21 29.54 -169.99 -5.02 16.18 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 O -0.35 -8.79 10.00 -35.23 -0.35 -9.14 16 22 S 0.24 4.13 22.98 -107.50 -2.47 1.66 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.17 2.35 8.06 -52.49 -0.42 1.93 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 1.12 8.06 -51.93 -0.42 0.70 16 29 H 0.07 1.33 7.65 -51.93 -0.40 0.93 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 283.97 15.07 4.28 4.28 Total: -1.00 -31.08 283.97 -6.76 -37.85 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: -3.73 Total: -3.05 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 0.16 Total: -9.55 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.56 Total: -33.86 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.55 Total: -13.51 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 4.13 SS G_CDS: -2.47 Total: 1.66 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.08 -6.76 -37.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389745632.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.158 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds