Wall clock time and date at job start Mon Mar 30 2020 06:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35554 * 117.00122 * 2 1 4 4 N 1.29508 * 124.93828 * 0.02777 * 3 2 1 5 5 C 1.32075 * 116.91980 * 179.73113 * 4 3 2 6 6 C 1.33376 * 114.55983 * 0.44849 * 5 4 3 7 7 C 1.50696 * 125.96876 * 179.85622 * 6 5 4 8 8 H 1.09000 * 110.28226 * 24.07613 * 7 6 5 9 9 C 1.55503 * 110.36702 * 261.96373 * 7 6 5 10 10 C 1.55305 * 100.69731 * 204.61043 * 9 7 6 11 11 C 1.54382 * 102.43395 * 34.13038 * 10 9 7 12 12 H 1.09007 * 109.82575 * 98.14672 * 11 10 9 13 13 C 1.50699 * 109.83066 * 219.02306 * 11 10 9 14 14 H 1.08006 * 119.99747 * 0.02562 * 13 11 10 15 15 C 1.37876 * 120.00153 * 180.02562 * 13 11 10 16 16 N 1.31508 * 120.00014 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 119.99940 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47371 * 59.99693 * 17 15 13 19 19 H 1.48502 * 109.47081 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47146 * 299.99363 * 17 15 13 21 21 O 1.43232 * 107.59109 * 338.54226 * 11 10 9 22 22 S 1.70962 * 124.94166 * 179.97438 * 3 2 1 23 23 H 1.08994 * 109.47186 * 299.99868 * 1 2 3 24 24 H 1.08997 * 109.47234 * 60.00108 * 1 2 3 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.08002 * 122.72041 * 180.28897 * 5 4 3 27 27 H 1.08999 * 111.32643 * 86.73983 * 9 7 6 28 28 H 1.08995 * 111.14910 * 322.41405 * 9 7 6 29 29 H 1.09002 * 110.85041 * 275.83884 * 10 9 7 30 30 H 1.09001 * 110.84389 * 152.42021 * 10 9 7 31 31 H 0.97005 * 120.00196 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2078 0.0000 4 7 1.4352 2.3506 0.0005 5 6 2.1931 3.4323 0.0060 6 6 3.5047 3.1902 0.0007 7 6 4.5965 4.2289 0.0019 8 1 4.2281 5.1637 0.4243 9 6 5.1245 4.4607 -1.4422 10 6 6.5538 4.9906 -1.1450 11 6 6.9427 4.2035 0.1248 12 1 7.5580 3.3454 -0.1461 13 6 7.7025 5.0994 1.0689 14 1 7.8939 6.1279 0.8008 15 6 8.1533 4.6059 2.2748 16 7 7.9207 3.3533 2.6011 17 14 9.0944 5.7166 3.4453 18 1 8.2412 6.8707 3.8263 19 1 9.4646 4.9518 4.6633 20 1 10.3253 6.2102 2.7772 21 8 5.7314 3.7584 0.7463 22 16 3.7376 1.4440 0.0006 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.7840 4.4318 0.0114 27 1 4.5295 5.2083 -1.9666 28 1 5.1605 3.5264 -2.0025 29 1 6.5367 6.0624 -0.9471 30 1 7.2315 4.7604 -1.9670 31 1 8.2375 3.0062 3.4497 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389745632.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:38 Heat of formation + Delta-G solvation = -54.997472 kcal Electronic energy + Delta-G solvation = -16545.650104 eV Core-core repulsion = 13725.874378 eV Total energy + Delta-G solvation = -2819.775727 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.17991 -39.97648 -38.76616 -34.75435 -32.74211 -32.23523 -29.42068 -28.61640 -26.48923 -25.10762 -22.77207 -22.02582 -21.26986 -19.69306 -18.57968 -18.18328 -17.28507 -16.78787 -16.59127 -16.19476 -15.88730 -15.33082 -14.72262 -14.70784 -14.09553 -13.87886 -13.65590 -12.91769 -12.77942 -12.60930 -12.51718 -12.40572 -12.21640 -12.15610 -11.95271 -11.55009 -11.09173 -10.88663 -10.63900 -10.28606 -9.87386 -9.33494 -8.10319 -6.31956 -0.21007 -0.12415 0.82715 1.42319 1.44332 1.51902 1.76970 2.41966 2.42962 3.08012 3.38224 3.57292 3.87660 3.90617 4.27440 4.37563 4.40374 4.47399 4.62145 4.67988 4.70599 4.88983 4.95886 4.98118 5.15341 5.23581 5.63425 5.77489 5.87031 6.20823 6.56138 6.59802 7.02669 7.45286 8.96231 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.034901 B = 0.005525 C = 0.005133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.070612 B = 5067.037155 C = 5453.584705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.291 6.291 3 C 0.198 3.802 4 N -0.543 5.543 5 C 0.063 3.937 6 C -0.241 4.241 7 C 0.143 3.857 8 H 0.083 0.917 9 C -0.131 4.131 10 C -0.137 4.137 11 C 0.197 3.803 12 H 0.004 0.996 13 C -0.564 4.564 14 H 0.065 0.935 15 C 0.025 3.975 16 N -0.902 5.902 17 Si 0.956 3.044 18 H -0.270 1.270 19 H -0.286 1.286 20 H -0.265 1.265 21 O -0.384 6.384 22 S 0.201 5.799 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.134 0.866 26 H 0.204 0.796 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.512 -2.338 -7.514 14.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.198 6.198 3 C -0.117 4.117 4 N -0.275 5.275 5 C -0.086 4.086 6 C -0.362 4.362 7 C 0.083 3.917 8 H 0.100 0.900 9 C -0.169 4.169 10 C -0.174 4.174 11 C 0.142 3.858 12 H 0.021 0.979 13 C -0.601 4.601 14 H 0.083 0.917 15 C -0.177 4.177 16 N -0.540 5.540 17 Si 0.781 3.219 18 H -0.195 1.195 19 H -0.212 1.212 20 H -0.189 1.189 21 O -0.304 6.304 22 S 0.453 5.547 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.152 0.848 26 H 0.220 0.780 27 H 0.125 0.875 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.129 -3.611 -7.208 14.564 hybrid contribution 0.040 1.295 0.791 1.518 sum -12.089 -2.316 -6.416 13.881 Atomic orbital electron populations 1.23280 0.74998 1.05488 1.02629 1.86312 1.24846 1.20491 1.88159 1.25491 0.96027 0.89043 1.01135 1.66695 1.39365 0.97345 1.24103 1.21470 0.87689 0.98256 1.01157 1.26026 0.99137 0.96256 1.14797 1.21270 0.85552 0.92085 0.92833 0.89983 1.23325 0.96151 1.02177 0.95199 1.23103 0.96188 1.00655 0.97479 1.20223 0.83112 0.92298 0.90194 0.97851 1.21806 1.35833 0.98067 1.04394 0.91733 1.25908 0.95924 0.96104 0.99772 1.70168 1.45374 1.15626 1.22832 0.85663 0.79241 0.78879 0.78107 1.19504 1.21199 1.18935 1.88752 1.14055 1.75719 1.51903 1.84590 0.98227 1.02248 1.69588 0.92386 0.91885 0.84824 0.77963 0.87486 0.91110 0.90826 0.90391 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.63 113.37 1.21 1.84 16 2 O -0.29 -8.11 10.56 -88.60 -0.94 -9.04 16 3 C 0.20 6.33 8.13 130.59 1.06 7.39 16 4 N -0.54 -17.17 9.88 -318.84 -3.15 -20.32 16 5 C 0.06 1.93 11.24 83.56 0.94 2.87 16 6 C -0.24 -8.44 5.63 24.58 0.14 -8.30 16 7 C 0.14 5.50 3.92 30.71 0.12 5.63 16 8 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 9 C -0.13 -4.21 6.60 32.25 0.21 -4.00 16 10 C -0.14 -5.21 6.51 31.86 0.21 -5.00 16 11 C 0.20 10.06 3.35 30.32 0.10 10.16 16 12 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 13 C -0.56 -31.28 8.75 25.60 0.22 -31.06 16 14 H 0.06 3.41 7.52 -2.91 -0.02 3.39 16 15 C 0.02 1.42 5.41 84.66 0.46 1.88 16 16 N -0.90 -54.86 12.93 21.45 0.28 -54.58 16 17 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 20 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 21 O -0.38 -19.65 10.00 -148.98 -1.49 -21.14 16 22 S 0.20 7.07 22.98 -56.49 -1.30 5.78 16 23 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.20 4.83 8.06 -2.91 -0.02 4.81 16 27 H 0.11 2.67 8.14 -2.39 -0.02 2.66 16 28 H 0.07 2.24 8.06 -2.39 -0.02 2.22 16 29 H 0.07 2.72 7.65 -2.39 -0.02 2.70 16 30 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 Total: -1.00 -67.98 283.97 1.23 -66.75 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: 1.13 Total: 5.22 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: 4.67 Total: -18.60 kcal Atomic # 7 Polarization: -72.03 SS G_CDS: -2.87 Total: -74.90 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -2.43 Total: -30.18 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 7.07 SS G_CDS: -1.30 Total: 5.78 kcal Total: -67.98 1.23 -66.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389745632.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.757 kcal (2) G-P(sol) polarization free energy of solvation -67.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds