Wall clock time and date at job start Mon Mar 30 2020 06:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99957 * 2 1 4 4 H 1.48499 * 109.46986 * 269.99574 * 3 2 1 5 5 H 1.48497 * 109.47415 * 29.99574 * 3 2 1 6 6 H 1.48504 * 109.47219 * 149.99609 * 3 2 1 7 7 C 1.37874 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99811 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00267 * 179.97438 * 7 2 1 10 10 N 1.46904 * 109.47283 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99892 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47171 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.46896 * 65.00212 * 12 11 10 14 14 C 1.35929 * 117.00101 * 180.02562 * 13 12 11 15 15 C 1.38701 * 120.05648 * 359.95940 * 14 13 12 16 16 C 1.38153 * 119.95853 * 180.02562 * 15 14 13 17 17 C 1.38285 * 120.07157 * 0.02562 * 16 15 14 18 18 C 1.38238 * 120.11971 * 0.02562 * 17 16 15 19 19 C 1.38255 * 120.04624 * 359.94924 * 18 17 16 20 20 Cl 1.73604 * 120.04140 * 180.02562 * 19 18 17 21 21 H 0.97004 * 120.00025 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.46814 * 60.00458 * 9 7 2 23 23 H 1.08998 * 109.47355 * 300.00892 * 9 7 2 24 24 H 1.00905 * 110.99232 * 56.05209 * 10 9 7 25 25 H 1.09000 * 109.46900 * 60.00274 * 11 10 9 26 26 H 1.08996 * 109.47103 * 300.00739 * 11 10 9 27 27 H 1.09004 * 109.47148 * 305.00509 * 12 11 10 28 28 H 1.08996 * 109.47021 * 185.00117 * 12 11 10 29 29 H 1.08003 * 120.02367 * 0.04181 * 15 14 13 30 30 H 1.08001 * 119.96476 * 180.29683 * 16 15 14 31 31 H 1.08006 * 119.93616 * 179.97438 * 17 16 15 32 32 H 1.08008 * 119.97717 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5791 0.0001 11 6 5.4697 -2.6183 -0.0011 12 6 5.9411 -4.0738 -0.0016 13 8 5.5452 -4.7023 -1.2224 14 6 5.8881 -6.0076 -1.3840 15 6 6.5917 -6.6694 -0.3886 16 6 6.9397 -7.9960 -0.5553 17 6 6.5877 -8.6645 -1.7135 18 6 5.8874 -8.0076 -2.7080 19 6 5.5362 -6.6802 -2.5462 20 17 4.6561 -5.8556 -3.7949 21 1 -0.4850 0.8401 -0.0004 22 1 3.8752 -0.6797 0.8895 23 1 3.8746 -0.6807 -0.8904 24 1 3.6254 -3.0954 -0.7812 25 1 5.8473 -2.1140 0.8884 26 1 5.8459 -2.1145 -0.8915 27 1 5.4928 -4.6012 0.8405 28 1 7.0270 -4.1041 0.0871 29 1 6.8672 -6.1481 0.5163 30 1 7.4834 -8.5127 0.2218 31 1 6.8612 -9.7014 -1.8416 32 1 5.6140 -8.5318 -3.6119 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389841550.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:22 Heat of formation + Delta-G solvation = -42.407609 kcal Electronic energy + Delta-G solvation = -15935.949642 eV Core-core repulsion = 13114.676146 eV Total energy + Delta-G solvation = -2821.273496 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.14901 -38.73758 -37.30692 -36.97342 -34.61601 -31.94967 -31.62027 -30.33326 -28.04918 -24.49277 -23.42043 -23.18444 -22.22864 -19.41430 -18.99718 -17.33261 -17.10840 -17.10127 -16.64238 -15.99892 -15.55868 -15.31875 -14.85872 -14.79748 -14.49408 -14.05894 -13.78685 -13.20213 -13.04172 -12.81487 -12.64977 -12.43735 -12.32033 -11.93243 -11.89657 -11.75179 -11.73112 -11.45506 -10.83439 -9.87193 -9.21722 -9.16058 -8.31413 -6.36643 0.17440 0.36792 1.25411 1.34032 1.36191 1.47595 2.18414 2.33230 2.68177 3.02395 3.43251 3.77772 3.87442 4.14095 4.21001 4.24532 4.36809 4.36955 4.47838 4.68541 4.76828 4.81098 4.87253 5.05940 5.15736 5.29718 5.46719 5.49774 5.74652 5.91014 6.34405 6.49401 6.61208 6.72468 7.28139 8.85710 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.031915 B = 0.004367 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.128643 B = 6409.577361 C = 6881.775168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.006 3.994 3 Si 0.956 3.044 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.245 1.245 7 C -0.532 4.532 8 H 0.032 0.968 9 C 0.173 3.827 10 N -0.689 5.689 11 C 0.055 3.945 12 C 0.066 3.934 13 O -0.327 6.327 14 C 0.120 3.880 15 C -0.205 4.205 16 C -0.072 4.072 17 C -0.147 4.147 18 C -0.079 4.079 19 C -0.099 4.099 20 Cl -0.079 7.079 21 H 0.268 0.732 22 H 0.034 0.966 23 H -0.016 1.016 24 H 0.336 0.664 25 H 0.104 0.896 26 H 0.031 0.969 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.152 0.848 30 H 0.163 0.837 31 H 0.164 0.836 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.571 -16.324 -2.368 25.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.191 4.191 3 Si 0.778 3.222 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.169 1.169 7 C -0.570 4.570 8 H 0.051 0.949 9 C 0.045 3.955 10 N -0.320 5.320 11 C -0.074 4.074 12 C -0.008 4.008 13 O -0.240 6.240 14 C 0.074 3.926 15 C -0.224 4.224 16 C -0.090 4.090 17 C -0.165 4.165 18 C -0.098 4.098 19 C -0.126 4.126 20 Cl -0.050 7.050 21 H 0.077 0.923 22 H 0.052 0.948 23 H 0.001 0.999 24 H 0.153 0.847 25 H 0.122 0.878 26 H 0.049 0.951 27 H 0.094 0.906 28 H 0.115 0.885 29 H 0.170 0.830 30 H 0.180 0.820 31 H 0.181 0.819 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 19.197 -16.062 -1.906 25.103 hybrid contribution -0.310 1.225 -1.017 1.622 sum 18.886 -14.838 -2.923 24.195 Atomic orbital electron populations 1.70066 1.08286 1.28306 1.52223 1.25936 0.95698 1.03491 0.93981 0.85597 0.79475 0.77991 0.79115 1.19385 1.20417 1.16891 1.21348 0.91550 0.93377 1.50720 0.94925 1.19784 0.93692 0.87121 0.94933 1.60489 1.06969 1.14685 1.49819 1.22143 0.88784 0.94670 1.01775 1.23050 1.00436 0.92586 0.84741 1.86142 1.75173 1.21672 1.41045 1.19062 0.95385 0.84298 0.93898 1.21557 1.03705 0.97471 0.99669 1.21490 0.96615 0.92859 0.98042 1.21429 0.99920 1.01825 0.93298 1.21222 0.96933 0.90533 1.01100 1.20605 1.06037 0.94810 0.91143 1.98370 1.74998 1.79457 1.52205 0.92298 0.94839 0.99877 0.84710 0.87769 0.95106 0.90642 0.88537 0.83003 0.81965 0.81859 0.82973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.82 13.96 21.45 0.30 -60.52 16 2 C 0.01 0.38 5.47 84.65 0.46 0.84 16 3 Si 0.96 44.82 27.47 68.60 1.88 46.70 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.25 -10.57 6.54 99.48 0.65 -9.92 16 7 C -0.53 -32.08 9.87 25.60 0.25 -31.83 16 8 H 0.03 2.20 8.06 -2.91 -0.02 2.18 16 9 C 0.17 8.54 4.51 85.56 0.39 8.92 16 10 N -0.69 -29.35 6.49 -517.93 -3.36 -32.71 16 11 C 0.06 1.74 6.11 86.30 0.53 2.26 16 12 C 0.07 1.68 5.08 71.98 0.37 2.04 16 13 O -0.33 -9.92 9.12 -92.75 -0.85 -10.77 16 14 C 0.12 3.17 6.68 22.52 0.15 3.32 16 15 C -0.21 -3.99 9.04 22.36 0.20 -3.79 16 16 C -0.07 -1.04 10.04 22.26 0.22 -0.82 16 17 C -0.15 -2.08 10.04 22.28 0.22 -1.86 16 18 C -0.08 -1.51 9.83 22.27 0.22 -1.29 16 19 C -0.10 -2.56 6.33 22.41 0.14 -2.42 16 20 Cl -0.08 -2.31 28.51 -2.72 -0.08 -2.39 16 21 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 22 H 0.03 1.61 7.20 -2.39 -0.02 1.59 16 23 H -0.02 -0.79 7.57 -2.39 -0.02 -0.81 16 24 H 0.34 15.15 8.28 -89.69 -0.74 14.41 16 25 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 26 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.08 1.86 7.66 -2.39 -0.02 1.84 16 28 H 0.10 1.75 7.66 -2.39 -0.02 1.73 16 29 H 0.15 2.36 6.30 -2.91 -0.02 2.34 16 30 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 31 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 32 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -72.20 290.78 1.38 -70.82 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.33 Total: 13.48 kcal Atomic # 6 Polarization: -27.77 SS G_CDS: 3.15 Total: -24.62 kcal Atomic # 7 Polarization: -90.17 SS G_CDS: -3.06 Total: -93.23 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -0.85 Total: -10.77 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.70 kcal Atomic # 17 Polarization: -2.31 SS G_CDS: -0.08 Total: -2.39 kcal Total: -72.20 1.38 -70.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389841550.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.414 kcal (2) G-P(sol) polarization free energy of solvation -72.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds