Wall clock time and date at job start Mon Mar 30 2020 06:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00414 * 2 1 4 4 H 1.48504 * 109.47220 * 240.00305 * 3 2 1 5 5 H 1.48504 * 109.47090 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47318 * 119.99781 * 3 2 1 7 7 C 1.37879 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00481 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99939 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47069 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99736 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46675 * 180.02562 * 11 10 9 13 13 O 1.42893 * 109.47763 * 64.99848 * 12 11 10 14 14 C 1.35916 * 117.00323 * 179.97438 * 13 12 11 15 15 C 1.38728 * 120.04362 * 0.27384 * 14 13 12 16 16 C 1.38137 * 119.95782 * 180.23553 * 15 14 13 17 17 C 1.38365 * 120.04335 * 359.48598 * 16 15 14 18 18 Cl 1.73604 * 119.96019 * 180.27880 * 17 16 15 19 19 C 1.38371 * 120.08418 * 0.25849 * 17 16 15 20 20 C 1.38143 * 120.04298 * 0.02562 * 19 17 16 21 21 H 0.97002 * 119.99260 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47227 * 59.99935 * 9 7 2 23 23 H 1.09008 * 109.47103 * 299.99950 * 9 7 2 24 24 H 1.00895 * 111.00139 * 303.94989 * 10 9 7 25 25 H 1.09000 * 109.47354 * 59.99643 * 11 10 9 26 26 H 1.09008 * 109.46821 * 299.99425 * 11 10 9 27 27 H 1.08998 * 109.47155 * 304.99159 * 12 11 10 28 28 H 1.09008 * 109.46599 * 184.99605 * 12 11 10 29 29 H 1.07998 * 120.01718 * 359.97438 * 15 14 13 30 30 H 1.08002 * 119.98114 * 179.77139 * 16 15 14 31 31 H 1.08001 * 119.97793 * 180.02562 * 19 17 16 32 32 H 1.07998 * 120.01925 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 1.5052 -4.9070 0.0012 12 6 2.5302 -6.0430 0.0032 13 8 3.2702 -6.0149 1.2252 14 6 4.2281 -6.9652 1.3885 15 6 4.4548 -7.9017 0.3905 16 6 5.4254 -8.8697 0.5604 17 6 6.1788 -8.8992 1.7206 18 17 7.4030 -10.1123 1.9288 19 6 5.9578 -7.9627 2.7150 20 6 4.9840 -6.9967 2.5513 21 1 -0.4849 0.8401 0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8904 24 1 2.8410 -3.5491 -0.7791 25 1 0.8813 -4.9816 -0.8894 26 1 0.8794 -4.9813 0.8906 27 1 3.2124 -5.9183 -0.8377 28 1 2.0135 -6.9986 -0.0868 29 1 3.8697 -7.8765 -0.5170 30 1 5.5996 -9.6013 -0.2148 31 1 6.5471 -7.9870 3.6198 32 1 4.8122 -6.2657 3.3275 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389891146.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:24 Heat of formation + Delta-G solvation = -45.310167 kcal Electronic energy + Delta-G solvation = -15597.166751 eV Core-core repulsion = 12775.767391 eV Total energy + Delta-G solvation = -2821.399360 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.11715 -38.81732 -37.32583 -36.79560 -34.61673 -32.23277 -31.36725 -30.04904 -27.76100 -24.61203 -23.62769 -23.33339 -22.30639 -19.36442 -18.60245 -17.55912 -17.12931 -16.92624 -16.56636 -16.00513 -15.59777 -15.03501 -14.79377 -14.49524 -14.34431 -14.18059 -13.69117 -13.33817 -13.13208 -13.01353 -12.61336 -12.47956 -12.46877 -12.16259 -11.91675 -11.61320 -11.53164 -11.28070 -10.66315 -10.10849 -9.11876 -9.07154 -8.23233 -6.34342 0.23329 0.25735 1.21181 1.41284 1.44936 1.52949 2.26560 2.40028 2.63709 3.10171 3.52606 3.74649 3.85500 4.01988 4.14428 4.18488 4.37117 4.44692 4.51408 4.66138 4.85312 4.95060 5.01270 5.07908 5.24299 5.25867 5.29524 5.59231 5.62157 6.00989 6.41436 6.46884 6.72313 6.88439 7.36620 8.88177 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.041396 B = 0.003222 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.229777 B = 8687.274858 C = 9099.129108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.973 3.027 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.538 4.538 8 H 0.063 0.937 9 C 0.208 3.792 10 N -0.689 5.689 11 C 0.055 3.945 12 C 0.070 3.930 13 O -0.317 6.317 14 C 0.124 3.876 15 C -0.203 4.203 16 C -0.069 4.069 17 C -0.088 4.088 18 Cl -0.072 7.072 19 C -0.069 4.069 20 C -0.157 4.157 21 H 0.266 0.734 22 H -0.034 1.034 23 H -0.002 1.002 24 H 0.335 0.665 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.154 0.846 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.203 -20.017 0.907 22.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.576 4.576 8 H 0.081 0.919 9 C 0.081 3.919 10 N -0.320 5.320 11 C -0.075 4.075 12 C -0.005 4.005 13 O -0.230 6.230 14 C 0.077 3.923 15 C -0.221 4.221 16 C -0.088 4.088 17 C -0.115 4.115 18 Cl -0.044 7.044 19 C -0.088 4.088 20 C -0.176 4.176 21 H 0.074 0.926 22 H -0.016 1.016 23 H 0.016 0.984 24 H 0.153 0.847 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.112 0.888 29 H 0.172 0.828 30 H 0.172 0.828 31 H 0.173 0.827 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 11.164 -19.849 1.733 22.839 hybrid contribution -0.309 0.782 -0.947 1.266 sum 10.854 -19.068 0.787 21.955 Atomic orbital electron populations 1.70078 1.07775 1.28116 1.51446 1.25951 0.95809 1.03388 0.94534 0.85386 0.78126 0.77619 0.79170 1.18962 1.20694 1.19483 1.21527 0.93791 0.91558 1.50764 0.91896 1.19201 0.90592 0.88832 0.93313 1.60505 1.20468 1.01479 1.49535 1.22043 0.95292 0.88905 1.01242 1.22985 0.93470 0.99016 0.84997 1.86254 1.46748 1.49533 1.40511 1.19481 0.89297 0.88583 0.94894 1.21447 1.02783 0.97308 1.00598 1.21071 0.93369 0.98032 0.96282 1.20903 0.96924 0.95704 0.97977 1.98354 1.53866 1.54744 1.97395 1.21027 0.96542 0.92260 0.98939 1.20600 0.97689 1.01685 0.97650 0.92557 1.01607 0.98376 0.84743 0.92459 0.91779 0.90677 0.88805 0.82803 0.82764 0.82733 0.84299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.64 13.29 21.45 0.28 -56.35 16 2 C 0.00 0.08 5.46 84.66 0.46 0.54 16 3 Si 0.97 44.48 29.54 68.60 2.03 46.51 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.54 -31.04 9.32 25.60 0.24 -30.80 16 8 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 9 C 0.21 11.21 5.44 85.56 0.47 11.67 16 10 N -0.69 -29.56 6.44 -517.90 -3.33 -32.89 16 11 C 0.05 1.81 6.07 86.30 0.52 2.34 16 12 C 0.07 1.77 5.02 71.98 0.36 2.13 16 13 O -0.32 -9.63 10.08 -92.61 -0.93 -10.56 16 14 C 0.12 3.15 6.69 22.50 0.15 3.30 16 15 C -0.20 -4.08 9.04 22.36 0.20 -3.88 16 16 C -0.07 -1.25 9.82 22.28 0.22 -1.03 16 17 C -0.09 -1.71 6.32 22.33 0.14 -1.57 16 18 Cl -0.07 -1.26 28.95 -2.72 -0.08 -1.34 16 19 C -0.07 -1.37 9.82 22.28 0.22 -1.15 16 20 C -0.16 -3.73 9.99 22.36 0.22 -3.51 16 21 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 22 H -0.03 -1.91 8.14 -2.39 -0.02 -1.93 16 23 H 0.00 -0.11 8.14 -2.38 -0.02 -0.13 16 24 H 0.34 13.42 8.72 -89.70 -0.78 12.64 16 25 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 27 H 0.08 1.67 7.65 -2.39 -0.02 1.65 16 28 H 0.09 1.75 7.67 -2.38 -0.02 1.73 16 29 H 0.15 2.43 6.30 -2.91 -0.02 2.41 16 30 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 31 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 32 H 0.14 3.24 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -66.25 295.81 1.51 -64.74 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.34 Total: 11.88 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: 3.21 Total: -21.97 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -3.05 Total: -89.24 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -0.93 Total: -10.56 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.08 Total: -1.34 kcal Total: -66.25 1.51 -64.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389891146.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.426 kcal (2) G-P(sol) polarization free energy of solvation -66.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds