Wall clock time and date at job start Mon Mar 30 2020 06:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 120.00163 * 2 1 4 4 H 1.48495 * 109.47244 * 239.99992 * 3 2 1 5 5 H 1.48506 * 109.47274 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47240 * 119.99951 * 3 2 1 7 7 C 1.37883 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00279 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99920 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47158 * 179.97438 * 9 7 2 11 11 C 1.46905 * 111.00154 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47150 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.47319 * 64.99949 * 12 11 10 14 14 C 1.35900 * 117.00172 * 179.97438 * 13 12 11 15 15 C 1.38761 * 120.04606 * 359.72218 * 14 13 12 16 16 C 1.38131 * 119.96646 * 179.74009 * 15 14 13 17 17 C 1.38265 * 120.06854 * 0.56021 * 16 15 14 18 18 C 1.38370 * 120.09963 * 359.69479 * 17 16 15 19 19 Cl 1.73596 * 119.98693 * 180.02562 * 18 17 16 20 20 C 1.38278 * 120.02485 * 0.02562 * 18 17 16 21 21 H 0.97004 * 119.99988 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47227 * 59.99563 * 9 7 2 23 23 H 1.08999 * 109.47038 * 299.99744 * 9 7 2 24 24 H 1.00895 * 110.99884 * 56.04394 * 10 9 7 25 25 H 1.09001 * 109.47063 * 59.99499 * 11 10 9 26 26 H 1.09004 * 109.46681 * 300.00124 * 11 10 9 27 27 H 1.09002 * 109.47153 * 304.99641 * 12 11 10 28 28 H 1.09001 * 109.46832 * 184.99832 * 12 11 10 29 29 H 1.07994 * 120.01556 * 0.02613 * 15 14 13 30 30 H 1.08005 * 119.96575 * 180.24959 * 16 15 14 31 31 H 1.08000 * 119.95031 * 179.71714 * 17 16 15 32 32 H 1.08006 * 120.03196 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5053 -4.9071 -0.0001 12 6 2.5302 -6.0431 0.0006 13 8 3.2712 -6.0155 1.2221 14 6 4.2291 -6.9657 1.3844 15 6 4.4473 -7.9091 0.3904 16 6 5.4250 -8.8709 0.5547 17 6 6.1786 -8.9018 1.7135 18 6 5.9598 -7.9657 2.7087 19 17 6.9082 -8.0067 4.1622 20 6 4.9860 -6.9975 2.5460 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 2.8405 -3.5487 0.7818 25 1 0.8806 -4.9813 -0.8903 26 1 0.8801 -4.9817 0.8897 27 1 3.2118 -5.9180 -0.8408 28 1 2.0135 -6.9986 -0.0894 29 1 3.8561 -7.8885 -0.5131 30 1 5.5975 -9.6027 -0.2207 31 1 6.9395 -9.6574 1.8419 32 1 4.8155 -6.2665 3.3226 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390002043.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:42 Heat of formation + Delta-G solvation = -26.989132 kcal Electronic energy + Delta-G solvation = -15658.649927 eV Core-core repulsion = 12838.045027 eV Total energy + Delta-G solvation = -2820.604900 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.23812 -37.91260 -36.48797 -35.20738 -32.58084 -31.18408 -30.20477 -28.96836 -25.93299 -23.32865 -22.73103 -21.67522 -20.95623 -18.50927 -16.56607 -16.28667 -16.03587 -15.89057 -15.26022 -14.67059 -14.34918 -14.02100 -13.69089 -13.58515 -13.03738 -12.55908 -12.05509 -11.85866 -11.80860 -11.52442 -11.23697 -11.20371 -11.01946 -10.85723 -10.61927 -10.58786 -9.89610 -9.20720 -9.04744 -8.48382 -8.37578 -7.35737 -6.03615 -4.05582 0.93790 1.18170 1.85881 3.25163 3.34576 3.37913 3.41484 3.45868 4.42883 4.55637 4.82255 4.88827 4.97005 5.02015 5.20587 5.25028 5.32481 5.42028 5.60427 5.71439 5.96424 6.04376 6.08412 6.13272 6.19899 6.41067 7.19688 7.34104 7.40310 7.76410 8.10274 8.36334 8.58140 9.03216 9.59329 11.07585 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.027738 B = 0.003640 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.192108 B = 7690.164900 C = 8382.310252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.690 5.690 11 C 0.060 3.940 12 C 0.062 3.938 13 O -0.305 6.305 14 C 0.156 3.844 15 C -0.207 4.207 16 C -0.067 4.067 17 C -0.158 4.158 18 C 0.005 3.995 19 Cl -0.068 7.068 20 C -0.150 4.150 21 H 0.262 0.738 22 H 0.028 0.972 23 H -0.012 1.012 24 H 0.336 0.664 25 H 0.086 0.914 26 H 0.031 0.969 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.947 -19.452 3.023 22.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.554 4.554 8 H 0.080 0.920 9 C 0.066 3.934 10 N -0.321 5.321 11 C -0.071 4.071 12 C -0.013 4.013 13 O -0.218 6.218 14 C 0.109 3.891 15 C -0.226 4.226 16 C -0.086 4.086 17 C -0.177 4.177 18 C -0.022 4.022 19 Cl -0.039 7.039 20 C -0.169 4.169 21 H 0.072 0.928 22 H 0.046 0.954 23 H 0.006 0.994 24 H 0.153 0.847 25 H 0.104 0.896 26 H 0.049 0.951 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.153 0.847 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 9.870 -19.149 2.588 21.698 hybrid contribution 0.076 0.781 0.805 1.124 sum 9.946 -18.368 3.394 21.162 Atomic orbital electron populations 1.69951 1.06101 1.26942 1.50839 1.24989 0.94888 0.99398 0.95279 0.86524 0.79414 0.82552 0.78701 1.20133 1.21323 1.20214 1.21145 0.93526 0.90218 1.50497 0.91974 1.19566 0.90602 0.87382 0.95814 1.60736 1.21087 1.00883 1.49419 1.21955 0.94080 0.89952 1.01077 1.23132 0.94116 0.99311 0.84775 1.86132 1.46124 1.48926 1.40635 1.18833 0.88844 0.88195 0.93239 1.21428 1.02738 0.98013 1.00435 1.20875 0.93817 0.97335 0.96551 1.20900 1.02784 1.00247 0.93743 1.20550 0.95029 0.97458 0.89171 1.98374 1.71172 1.98096 1.36234 1.20258 0.97255 1.01108 0.98284 0.92833 0.95403 0.99448 0.84663 0.89555 0.95127 0.90903 0.92087 0.84704 0.84920 0.85044 0.84032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.88 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.79 9.32 -34.44 -0.32 -15.11 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.19 5.09 5.44 -4.98 -0.03 5.06 16 10 N -0.69 -14.90 6.49 -115.05 -0.75 -15.65 16 11 C 0.06 1.01 6.11 -3.82 -0.02 0.99 16 12 C 0.06 0.84 5.08 37.16 0.19 1.03 16 13 O -0.31 -4.59 9.66 -19.43 -0.19 -4.78 16 14 C 0.16 2.05 6.69 -39.22 -0.26 1.79 16 15 C -0.21 -2.25 9.04 -39.43 -0.36 -2.61 16 16 C -0.07 -0.62 10.04 -39.61 -0.40 -1.02 16 17 C -0.16 -1.54 9.83 -39.52 -0.39 -1.92 16 18 C 0.00 0.05 6.32 -39.52 -0.25 -0.20 16 19 Cl -0.07 -0.71 28.95 -51.86 -1.50 -2.21 16 20 C -0.15 -1.89 9.77 -39.40 -0.38 -2.28 16 21 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 22 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 23 H -0.01 -0.34 8.14 -51.93 -0.42 -0.77 16 24 H 0.34 7.26 8.28 -39.29 -0.33 6.93 16 25 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.96 7.67 -51.93 -0.40 0.56 16 28 H 0.06 0.66 7.65 -51.93 -0.40 0.26 16 29 H 0.14 1.25 6.30 -52.49 -0.33 0.92 16 30 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 31 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 32 H 0.14 1.76 8.06 -52.48 -0.42 1.34 16 LS Contribution 295.09 15.07 4.45 4.45 Total: -1.00 -30.57 295.09 -8.55 -39.11 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -3.96 Total: 1.25 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -2.32 Total: -12.76 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: -0.01 Total: -41.92 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -0.19 Total: -4.78 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.57 -8.55 -39.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390002043.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.125 kcal (2) G-P(sol) polarization free energy of solvation -30.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds