Wall clock time and date at job start Mon Mar 30 2020 06:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 120.00163 * 2 1 4 4 H 1.48495 * 109.47244 * 239.99992 * 3 2 1 5 5 H 1.48506 * 109.47274 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47240 * 119.99951 * 3 2 1 7 7 C 1.37883 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00279 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99920 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47158 * 179.97438 * 9 7 2 11 11 C 1.46905 * 111.00154 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47150 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.47319 * 64.99949 * 12 11 10 14 14 C 1.35900 * 117.00172 * 179.97438 * 13 12 11 15 15 C 1.38761 * 120.04606 * 359.72218 * 14 13 12 16 16 C 1.38131 * 119.96646 * 179.74009 * 15 14 13 17 17 C 1.38265 * 120.06854 * 0.56021 * 16 15 14 18 18 C 1.38370 * 120.09963 * 359.69479 * 17 16 15 19 19 Cl 1.73596 * 119.98693 * 180.02562 * 18 17 16 20 20 C 1.38278 * 120.02485 * 0.02562 * 18 17 16 21 21 H 0.97004 * 119.99988 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47227 * 59.99563 * 9 7 2 23 23 H 1.08999 * 109.47038 * 299.99744 * 9 7 2 24 24 H 1.00895 * 110.99884 * 56.04394 * 10 9 7 25 25 H 1.09001 * 109.47063 * 59.99499 * 11 10 9 26 26 H 1.09004 * 109.46681 * 300.00124 * 11 10 9 27 27 H 1.09002 * 109.47153 * 304.99641 * 12 11 10 28 28 H 1.09001 * 109.46832 * 184.99832 * 12 11 10 29 29 H 1.07994 * 120.01556 * 0.02613 * 15 14 13 30 30 H 1.08005 * 119.96575 * 180.24959 * 16 15 14 31 31 H 1.08000 * 119.95031 * 179.71714 * 17 16 15 32 32 H 1.08006 * 120.03196 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5053 -4.9071 -0.0001 12 6 2.5302 -6.0431 0.0006 13 8 3.2712 -6.0155 1.2221 14 6 4.2291 -6.9657 1.3844 15 6 4.4473 -7.9091 0.3904 16 6 5.4250 -8.8709 0.5547 17 6 6.1786 -8.9018 1.7135 18 6 5.9598 -7.9657 2.7087 19 17 6.9082 -8.0067 4.1622 20 6 4.9860 -6.9975 2.5460 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 2.8405 -3.5487 0.7818 25 1 0.8806 -4.9813 -0.8903 26 1 0.8801 -4.9817 0.8897 27 1 3.2118 -5.9180 -0.8408 28 1 2.0135 -6.9986 -0.0894 29 1 3.8561 -7.8885 -0.5131 30 1 5.5975 -9.6027 -0.2207 31 1 6.9395 -9.6574 1.8419 32 1 4.8155 -6.2665 3.3226 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390002043.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:41 Heat of formation + Delta-G solvation = -46.611199 kcal Electronic energy + Delta-G solvation = -15659.500803 eV Core-core repulsion = 12838.045027 eV Total energy + Delta-G solvation = -2821.455777 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.16974 -38.87474 -37.41037 -36.83599 -34.62266 -32.12966 -31.29558 -30.27466 -27.79208 -24.54031 -23.64214 -23.48887 -22.18256 -19.44060 -18.61439 -17.22225 -17.05647 -17.04610 -16.71002 -16.18054 -15.81797 -15.05719 -15.04420 -14.60991 -14.29307 -14.19772 -13.56156 -13.23839 -12.99870 -12.77588 -12.72462 -12.51371 -12.47297 -12.15346 -12.01001 -11.80085 -11.70684 -11.28825 -10.66911 -9.88142 -9.26710 -9.18128 -8.23998 -6.35265 0.10901 0.34365 1.02307 1.40860 1.44424 1.52544 2.25853 2.39547 2.63046 3.09354 3.50656 3.76084 3.97778 4.05895 4.14262 4.24549 4.28982 4.39264 4.44237 4.67690 4.81280 4.85791 5.06967 5.15524 5.25010 5.27939 5.35250 5.58786 5.60295 5.99417 6.36815 6.40938 6.66985 6.85111 7.35574 8.87499 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.027738 B = 0.003640 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.192108 B = 7690.164900 C = 8382.310252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.973 3.027 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.206 3.794 10 N -0.688 5.688 11 C 0.056 3.944 12 C 0.071 3.929 13 O -0.333 6.333 14 C 0.131 3.869 15 C -0.208 4.208 16 C -0.060 4.060 17 C -0.153 4.153 18 C -0.005 4.005 19 Cl -0.066 7.066 20 C -0.170 4.170 21 H 0.266 0.734 22 H 0.007 0.993 23 H -0.040 1.040 24 H 0.336 0.664 25 H 0.096 0.904 26 H 0.023 0.977 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.153 0.847 30 H 0.169 0.831 31 H 0.156 0.844 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.435 -20.632 2.221 23.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.797 3.203 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.578 4.578 8 H 0.080 0.920 9 C 0.079 3.921 10 N -0.319 5.319 11 C -0.074 4.074 12 C -0.003 4.003 13 O -0.247 6.247 14 C 0.085 3.915 15 C -0.226 4.226 16 C -0.078 4.078 17 C -0.172 4.172 18 C -0.032 4.032 19 Cl -0.037 7.037 20 C -0.189 4.189 21 H 0.075 0.925 22 H 0.025 0.975 23 H -0.022 1.022 24 H 0.152 0.848 25 H 0.114 0.886 26 H 0.041 0.959 27 H 0.097 0.903 28 H 0.114 0.886 29 H 0.170 0.830 30 H 0.187 0.813 31 H 0.173 0.827 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 11.372 -20.360 1.788 23.389 hybrid contribution -0.370 1.034 1.074 1.536 sum 11.002 -19.326 2.863 22.421 Atomic orbital electron populations 1.70074 1.07766 1.28153 1.51353 1.25949 0.95817 1.03378 0.94462 0.85380 0.78136 0.77596 0.79161 1.19168 1.20576 1.19311 1.21520 0.93769 0.91578 1.50933 0.91962 1.19231 0.90644 0.88864 0.93407 1.60622 1.20354 1.01609 1.49321 1.22088 0.95159 0.88929 1.01184 1.23013 0.93581 0.99042 0.84705 1.86067 1.47130 1.50287 1.41173 1.19033 0.89198 0.88958 0.94328 1.21694 1.03184 0.97487 1.00267 1.21306 0.92422 0.97125 0.96988 1.21274 1.02879 0.99841 0.93206 1.20692 0.94939 0.97697 0.89846 1.98371 1.70962 1.98087 1.36246 1.20316 0.98358 1.01828 0.98421 0.92517 0.97520 1.02243 0.84765 0.88606 0.95865 0.90267 0.88642 0.82982 0.81345 0.82670 0.85174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 2 C 0.00 0.13 5.46 84.66 0.46 0.60 16 3 Si 0.97 44.83 29.54 68.60 2.03 46.85 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.54 -31.50 9.32 25.60 0.24 -31.26 16 8 H 0.06 3.55 7.81 -2.91 -0.02 3.52 16 9 C 0.21 11.25 5.44 85.56 0.47 11.72 16 10 N -0.69 -30.24 6.49 -517.92 -3.36 -33.60 16 11 C 0.06 1.90 6.11 86.30 0.53 2.43 16 12 C 0.07 1.84 5.08 71.98 0.37 2.20 16 13 O -0.33 -9.92 9.66 -92.43 -0.89 -10.82 16 14 C 0.13 3.35 6.69 22.50 0.15 3.50 16 15 C -0.21 -3.99 9.04 22.37 0.20 -3.79 16 16 C -0.06 -0.91 10.04 22.25 0.22 -0.69 16 17 C -0.15 -2.56 9.83 22.31 0.22 -2.34 16 18 C -0.01 -0.11 6.32 22.31 0.14 0.03 16 19 Cl -0.07 -1.32 28.95 -2.72 -0.08 -1.40 16 20 C -0.17 -4.30 9.77 22.39 0.22 -4.08 16 21 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 22 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 23 H -0.04 -2.36 8.14 -2.39 -0.02 -2.38 16 24 H 0.34 14.82 8.28 -89.70 -0.74 14.07 16 25 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 26 H 0.02 0.82 8.14 -2.39 -0.02 0.81 16 27 H 0.08 1.94 7.67 -2.39 -0.02 1.92 16 28 H 0.10 1.81 7.65 -2.39 -0.02 1.79 16 29 H 0.15 2.31 6.30 -2.91 -0.02 2.30 16 30 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 31 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 32 H 0.13 3.43 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -66.65 295.09 1.57 -65.07 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 0.38 Total: 12.20 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: 3.21 Total: -21.69 kcal Atomic # 7 Polarization: -87.14 SS G_CDS: -3.08 Total: -90.22 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -0.89 Total: -10.82 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.40 kcal Total: -66.65 1.57 -65.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390002043.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.462 kcal (2) G-P(sol) polarization free energy of solvation -66.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds