Wall clock time and date at job start Mon Mar 30 2020 06:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00232 * 2 1 4 4 H 1.48503 * 109.46857 * 239.99726 * 3 2 1 5 5 H 1.48501 * 109.47299 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47229 * 119.99835 * 3 2 1 7 7 C 1.37885 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99654 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99735 * 0.28000 * 7 2 1 10 10 C 1.50702 * 109.46676 * 179.72157 * 9 7 2 11 11 C 1.38250 * 120.00221 * 269.72510 * 10 9 7 12 12 C 1.38209 * 120.00304 * 179.81568 * 11 10 9 13 13 C 1.38257 * 119.99694 * 0.39181 * 12 11 10 14 14 C 1.50700 * 119.99910 * 179.83481 * 13 12 11 15 15 Cl 1.80299 * 109.47171 * 263.19732 * 14 13 12 16 16 C 1.38214 * 120.00433 * 359.86235 * 13 12 11 17 17 N 1.48008 * 120.00382 * 179.97438 * 16 13 12 18 18 O 1.21806 * 120.00283 * 173.55936 * 17 16 13 19 19 O 1.21795 * 120.00250 * 353.55405 * 17 16 13 20 20 C 1.38214 * 119.99486 * 90.00196 * 10 9 7 21 21 H 0.97006 * 119.99573 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47102 * 299.72198 * 9 7 2 23 23 H 1.08998 * 109.47158 * 59.72518 * 9 7 2 24 24 H 1.08005 * 119.99990 * 359.97438 * 11 10 9 25 25 H 1.07994 * 120.00503 * 180.22908 * 12 11 10 26 26 H 1.08999 * 109.47139 * 23.19766 * 14 13 12 27 27 H 1.09007 * 109.46969 * 143.19453 * 14 13 12 28 28 H 1.08000 * 120.00453 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0053 10 6 2.2302 -3.6446 -0.0103 11 6 2.6751 -4.1685 -1.2099 12 6 3.5762 -5.2165 -1.2145 13 6 4.0264 -5.7463 -0.0195 14 6 5.0061 -6.8914 -0.0245 15 17 4.1143 -8.4461 0.1716 16 6 3.5777 -5.2261 1.1798 17 7 4.0593 -5.7936 2.4591 18 8 3.7574 -5.2626 3.5130 19 8 4.7573 -6.7917 2.4582 20 6 2.6792 -4.1751 1.1844 21 1 -0.4850 0.8401 -0.0004 22 1 0.6243 -2.5608 0.8844 23 1 0.6244 -2.5530 -0.8955 24 1 2.3205 -3.7571 -2.1434 25 1 3.9266 -5.6233 -2.1515 26 1 5.5492 -6.9008 -0.9695 27 1 5.7107 -6.7703 0.7983 28 1 2.3286 -3.7686 2.1215 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396094851.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:36 Heat of formation + Delta-G solvation = -0.796498 kcal Electronic energy + Delta-G solvation = -16180.502544 eV Core-core repulsion = 13225.200347 eV Total energy + Delta-G solvation = -2955.302197 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.98528 -39.35925 -36.52108 -35.91568 -34.15808 -32.36816 -31.64013 -29.04112 -26.74623 -25.33102 -23.06147 -22.49136 -21.04825 -18.44975 -17.98671 -17.35522 -16.56042 -15.94614 -15.67543 -14.79553 -14.48697 -14.17007 -13.62873 -13.16544 -12.89695 -12.23709 -11.98015 -11.71428 -11.43074 -11.19129 -11.00346 -10.91268 -10.83741 -10.69473 -10.52465 -10.16163 -9.94527 -9.80384 -9.27787 -8.63991 -8.49226 -6.26801 -4.33432 0.10699 1.12196 1.66180 1.68902 2.43771 3.19171 3.24724 3.26740 3.68249 4.25187 4.27696 4.44622 4.87939 5.08512 5.13494 5.28359 5.30599 5.35820 5.53152 5.86263 6.05801 6.28540 6.48563 6.57771 6.86516 7.20739 7.34512 7.66266 7.93130 7.98947 8.70271 9.32531 10.82864 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.032814 B = 0.005379 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.098257 B = 5204.397730 C = 5602.333448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.047 3.953 10 C -0.021 4.021 11 C -0.073 4.073 12 C -0.102 4.102 13 C -0.077 4.077 14 C 0.001 3.999 15 Cl -0.165 7.165 16 C -0.028 4.028 17 N 0.034 4.966 18 O -0.168 6.168 19 O -0.167 6.167 20 C -0.059 4.059 21 H 0.266 0.734 22 H 0.038 0.962 23 H 0.039 0.961 24 H 0.143 0.857 25 H 0.140 0.860 26 H 0.102 0.898 27 H 0.122 0.878 28 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.366 -10.834 -2.891 13.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.563 4.563 8 H 0.076 0.924 9 C 0.010 3.990 10 C -0.022 4.022 11 C -0.091 4.091 12 C -0.121 4.121 13 C -0.079 4.079 14 C -0.061 4.061 15 Cl -0.138 7.138 16 C -0.111 4.111 17 N 0.550 4.450 18 O -0.382 6.382 19 O -0.380 6.380 20 C -0.078 4.078 21 H 0.076 0.924 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.161 0.839 25 H 0.158 0.842 26 H 0.120 0.880 27 H 0.140 0.860 28 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.917 -10.579 -3.468 13.106 hybrid contribution 0.505 0.790 0.332 0.995 sum 7.422 -9.788 -3.136 12.678 Atomic orbital electron populations 1.69928 1.06083 1.27464 1.49107 1.24996 0.94934 0.99438 0.94575 0.86532 0.79557 0.82402 0.78881 1.20059 1.20999 1.19951 1.20915 0.92984 0.89482 1.52939 0.92365 1.18479 0.92189 0.88785 0.99526 1.20901 0.95905 0.95081 0.90327 1.21607 0.94343 0.93623 0.99523 1.21047 0.97702 0.97060 0.96299 1.19396 0.99505 0.97452 0.91514 1.23379 0.94240 0.82164 1.06312 1.98723 1.79657 1.36879 1.98561 1.20941 1.05768 1.01995 0.82432 1.43661 0.98722 0.99617 1.03035 1.94544 1.61198 1.62621 1.19859 1.94433 1.34935 1.14764 1.93839 1.21099 0.93369 0.91849 1.01446 0.92389 0.94401 0.94241 0.83933 0.84181 0.88004 0.85968 0.82989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.50 13.29 55.43 0.74 -23.76 15 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 15 3 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 15 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 7 C -0.53 -13.38 9.09 -34.44 -0.31 -13.70 15 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 15 9 C 0.05 1.07 5.11 -29.03 -0.15 0.92 15 10 C -0.02 -0.39 5.07 -104.63 -0.53 -0.92 15 11 C -0.07 -1.12 9.70 -39.59 -0.38 -1.50 15 12 C -0.10 -1.32 9.68 -39.58 -0.38 -1.71 15 13 C -0.08 -1.09 5.26 -104.62 -0.55 -1.64 15 14 C 0.00 0.02 5.87 36.01 0.21 0.23 15 15 Cl -0.16 -2.18 28.04 -51.86 -1.45 -3.63 15 16 C -0.03 -0.47 6.83 -79.95 -0.55 -1.01 15 17 N 0.03 0.59 4.45 33.96 0.15 0.74 15 18 O -0.17 -3.13 18.47 -29.46 -0.54 -3.68 15 19 O -0.17 -2.78 14.42 -29.46 -0.42 -3.20 15 20 C -0.06 -1.06 9.21 -39.58 -0.36 -1.42 15 21 H 0.27 6.98 8.31 -40.82 -0.34 6.64 15 22 H 0.04 0.91 8.09 -51.93 -0.42 0.49 15 23 H 0.04 0.92 8.08 -51.93 -0.42 0.50 15 24 H 0.14 1.97 8.06 -52.48 -0.42 1.55 15 25 H 0.14 1.32 8.06 -52.49 -0.42 0.90 15 26 H 0.10 0.89 8.04 -51.93 -0.42 0.47 15 27 H 0.12 1.50 5.86 -51.93 -0.30 1.19 15 28 H 0.15 2.78 7.63 -52.49 -0.40 2.38 15 LS Contribution 270.66 15.07 4.08 4.08 Total: -1.00 -27.66 270.66 -7.93 -35.59 By element: Atomic # 1 Polarization: 0.14 SS G_CDS: -2.35 Total: -2.21 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -3.11 Total: -19.18 kcal Atomic # 7 Polarization: -23.90 SS G_CDS: 0.89 Total: -23.02 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -0.97 Total: -6.88 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 17 Polarization: -2.18 SS G_CDS: -1.45 Total: -3.63 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.66 -7.93 -35.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396094851.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.797 kcal (2) G-P(sol) polarization free energy of solvation -27.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds