Wall clock time and date at job start Mon Mar 30 2020 06:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00232 * 2 1 4 4 H 1.48503 * 109.46857 * 239.99726 * 3 2 1 5 5 H 1.48501 * 109.47299 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47229 * 119.99835 * 3 2 1 7 7 C 1.37885 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99654 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99735 * 0.28000 * 7 2 1 10 10 C 1.50702 * 109.46676 * 179.72157 * 9 7 2 11 11 C 1.38250 * 120.00221 * 269.72510 * 10 9 7 12 12 C 1.38209 * 120.00304 * 179.81568 * 11 10 9 13 13 C 1.38257 * 119.99694 * 0.39181 * 12 11 10 14 14 C 1.50700 * 119.99910 * 179.83481 * 13 12 11 15 15 Cl 1.80299 * 109.47171 * 263.19732 * 14 13 12 16 16 C 1.38214 * 120.00433 * 359.86235 * 13 12 11 17 17 N 1.48008 * 120.00382 * 179.97438 * 16 13 12 18 18 O 1.21806 * 120.00283 * 173.55936 * 17 16 13 19 19 O 1.21795 * 120.00250 * 353.55405 * 17 16 13 20 20 C 1.38214 * 119.99486 * 90.00196 * 10 9 7 21 21 H 0.97006 * 119.99573 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47102 * 299.72198 * 9 7 2 23 23 H 1.08998 * 109.47158 * 59.72518 * 9 7 2 24 24 H 1.08005 * 119.99990 * 359.97438 * 11 10 9 25 25 H 1.07994 * 120.00503 * 180.22908 * 12 11 10 26 26 H 1.08999 * 109.47139 * 23.19766 * 14 13 12 27 27 H 1.09007 * 109.46969 * 143.19453 * 14 13 12 28 28 H 1.08000 * 120.00453 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0053 10 6 2.2302 -3.6446 -0.0103 11 6 2.6751 -4.1685 -1.2099 12 6 3.5762 -5.2165 -1.2145 13 6 4.0264 -5.7463 -0.0195 14 6 5.0061 -6.8914 -0.0245 15 17 4.1143 -8.4461 0.1716 16 6 3.5777 -5.2261 1.1798 17 7 4.0593 -5.7936 2.4591 18 8 3.7574 -5.2626 3.5130 19 8 4.7573 -6.7917 2.4582 20 6 2.6792 -4.1751 1.1844 21 1 -0.4850 0.8401 -0.0004 22 1 0.6243 -2.5608 0.8844 23 1 0.6244 -2.5530 -0.8955 24 1 2.3205 -3.7571 -2.1434 25 1 3.9266 -5.6233 -2.1515 26 1 5.5492 -6.9008 -0.9695 27 1 5.7107 -6.7703 0.7983 28 1 2.3286 -3.7686 2.1215 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396094851.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:35 Heat of formation + Delta-G solvation = -14.244763 kcal Electronic energy + Delta-G solvation = -16181.085705 eV Core-core repulsion = 13225.200347 eV Total energy + Delta-G solvation = -2955.885357 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.35163 -40.64782 -37.85059 -36.99570 -35.78970 -34.02325 -32.89714 -30.54709 -28.19464 -26.78044 -24.67244 -23.75807 -22.44606 -19.80123 -19.39715 -18.74233 -18.53801 -17.17042 -16.90609 -16.58736 -15.53580 -15.38002 -14.70620 -14.59640 -14.52927 -13.69995 -13.43313 -13.33959 -13.05303 -12.61894 -12.55282 -12.50949 -12.34210 -12.10124 -11.80094 -11.68296 -11.48954 -11.17140 -10.65346 -10.50686 -9.90643 -8.27037 -6.40077 -1.22340 -0.10600 0.34203 0.36588 1.38946 1.41033 1.43313 1.49545 2.32651 2.47953 3.06335 3.13417 3.33662 3.70490 4.00276 4.01226 4.16166 4.27405 4.40631 4.65016 4.80209 5.01422 5.06037 5.18793 5.26354 5.57024 5.63618 5.66039 6.04684 6.54323 6.71602 7.29603 8.82531 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.032814 B = 0.005379 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.098257 B = 5204.397730 C = 5602.333448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.011 3.989 3 Si 0.961 3.039 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.058 0.942 9 C 0.054 3.946 10 C -0.046 4.046 11 C -0.064 4.064 12 C -0.081 4.081 13 C -0.064 4.064 14 C 0.001 3.999 15 Cl -0.174 7.174 16 C -0.040 4.040 17 N 0.034 4.966 18 O -0.224 6.224 19 O -0.129 6.129 20 C -0.073 4.073 21 H 0.267 0.733 22 H 0.007 0.993 23 H 0.027 0.973 24 H 0.160 0.840 25 H 0.193 0.807 26 H 0.148 0.852 27 H 0.120 0.880 28 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.575 -12.009 -5.028 16.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.786 3.214 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.076 0.924 9 C 0.017 3.983 10 C -0.047 4.047 11 C -0.082 4.082 12 C -0.099 4.099 13 C -0.066 4.066 14 C -0.061 4.061 15 Cl -0.147 7.147 16 C -0.124 4.124 17 N 0.548 4.452 18 O -0.424 6.424 19 O -0.354 6.354 20 C -0.092 4.092 21 H 0.076 0.924 22 H 0.026 0.974 23 H 0.045 0.955 24 H 0.178 0.822 25 H 0.210 0.790 26 H 0.166 0.834 27 H 0.138 0.862 28 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 9.077 -11.673 -5.528 15.786 hybrid contribution -0.103 0.985 0.916 1.349 sum 8.974 -10.689 -4.611 14.698 Atomic orbital electron populations 1.70044 1.07563 1.28227 1.50537 1.25838 0.95687 1.02924 0.94376 0.85555 0.78363 0.78377 0.79147 1.18757 1.20777 1.19867 1.21292 0.93197 0.90899 1.51956 0.92351 1.18189 0.92626 0.90061 0.97399 1.20485 0.96854 0.95254 0.92076 1.21823 0.94042 0.93726 0.98614 1.21531 0.95530 0.95100 0.97716 1.19855 0.98678 0.97389 0.90659 1.23590 0.93224 0.80405 1.08834 1.98735 1.80002 1.37316 1.98668 1.21026 1.06286 1.02243 0.82841 1.43794 0.98609 0.99569 1.03253 1.94567 1.63402 1.63852 1.20554 1.94392 1.33295 1.13871 1.93859 1.20869 0.94643 0.93062 1.00648 0.92399 0.97444 0.95456 0.82231 0.78987 0.83443 0.86227 0.85062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.43 13.29 21.45 0.28 -52.14 15 2 C 0.01 0.60 5.46 84.66 0.46 1.06 15 3 Si 0.96 41.74 29.54 68.60 2.03 43.77 15 4 H -0.26 -10.83 7.11 99.48 0.71 -10.12 15 5 H -0.28 -12.07 7.11 99.48 0.71 -11.37 15 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 15 7 C -0.54 -27.88 9.09 25.60 0.23 -27.65 15 8 H 0.06 2.96 7.74 -2.91 -0.02 2.94 15 9 C 0.05 2.57 5.11 29.10 0.15 2.72 15 10 C -0.05 -1.71 5.07 -19.87 -0.10 -1.81 15 11 C -0.06 -1.80 9.70 22.27 0.22 -1.58 15 12 C -0.08 -1.70 9.68 22.27 0.22 -1.49 15 13 C -0.06 -1.58 5.26 -19.87 -0.10 -1.69 15 14 C 0.00 0.03 5.87 71.24 0.42 0.45 15 15 Cl -0.17 -3.98 28.04 -2.72 -0.08 -4.05 15 16 C -0.04 -1.31 6.83 36.38 0.25 -1.06 15 17 N 0.03 1.18 4.45 -46.47 -0.21 0.97 15 18 O -0.22 -8.69 18.47 18.88 0.35 -8.34 15 19 O -0.13 -4.08 14.42 18.89 0.27 -3.81 15 20 C -0.07 -2.71 9.21 22.27 0.21 -2.50 15 21 H 0.27 14.34 8.31 -92.70 -0.77 13.57 15 22 H 0.01 0.38 8.09 -2.39 -0.02 0.36 15 23 H 0.03 1.33 8.08 -2.39 -0.02 1.31 15 24 H 0.16 3.94 8.06 -2.91 -0.02 3.91 15 25 H 0.19 2.18 8.06 -2.91 -0.02 2.15 15 26 H 0.15 1.57 8.04 -2.39 -0.02 1.55 15 27 H 0.12 2.43 5.86 -2.38 -0.01 2.41 15 28 H 0.13 5.27 7.63 -2.91 -0.02 5.25 15 Total: -1.00 -62.01 270.66 5.78 -56.23 By element: Atomic # 1 Polarization: -0.25 SS G_CDS: 1.19 Total: 0.93 kcal Atomic # 6 Polarization: -35.50 SS G_CDS: 1.94 Total: -33.56 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: 0.08 Total: -51.17 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.62 Total: -12.15 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Atomic # 17 Polarization: -3.98 SS G_CDS: -0.08 Total: -4.05 kcal Total: -62.01 5.78 -56.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396094851.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.987 kcal (2) G-P(sol) polarization free energy of solvation -62.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds