Wall clock time and date at job start Mon Mar 30 2020 06:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99922 * 2 1 4 4 H 1.48498 * 109.46903 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46821 * 299.99525 * 3 2 1 6 6 H 1.48495 * 109.47138 * 60.00006 * 3 2 1 7 7 C 1.37883 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99747 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.46675 * 179.97438 * 9 7 2 11 11 C 1.38261 * 119.99931 * 265.01982 * 10 9 7 12 12 C 1.38215 * 119.99889 * 179.97438 * 11 10 9 13 13 C 1.38249 * 120.00237 * 359.97438 * 12 11 10 14 14 N 1.48020 * 120.00365 * 180.02562 * 13 12 11 15 15 O 1.21801 * 119.99705 * 0.02562 * 14 13 12 16 16 O 1.21796 * 120.00656 * 180.02562 * 14 13 12 17 17 C 1.38221 * 119.99938 * 359.74850 * 13 12 11 18 18 C 1.38214 * 120.00078 * 85.00014 * 10 9 7 19 19 C 1.50698 * 120.00354 * 359.97438 * 18 10 9 20 20 Cl 1.80299 * 109.47172 * 89.99879 * 19 18 10 21 21 H 0.97000 * 120.00135 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47224 * 59.99984 * 9 7 2 23 23 H 1.08999 * 109.46692 * 299.99212 * 9 7 2 24 24 H 1.07994 * 120.00069 * 0.02562 * 11 10 9 25 25 H 1.08004 * 119.99700 * 180.02562 * 12 11 10 26 26 H 1.08005 * 119.99784 * 180.26792 * 17 13 12 27 27 H 1.09001 * 109.46665 * 330.00235 * 19 18 10 28 28 H 1.08996 * 109.47063 * 210.00251 * 19 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6005 -4.2376 -1.1923 12 6 3.4991 -5.2877 -1.1924 13 6 4.0282 -5.7449 0.0003 14 7 4.9910 -6.8692 0.0002 15 8 5.3175 -7.3913 -1.0507 16 8 5.4567 -7.2723 1.0509 17 6 3.6625 -5.1484 1.1923 18 6 2.7587 -4.1021 1.1929 19 6 2.3560 -3.4551 2.4931 20 17 0.9079 -4.2971 3.1601 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8904 24 1 2.1882 -3.8796 -2.1241 25 1 3.7887 -5.7506 -2.1242 26 1 4.0791 -5.5027 2.1236 27 1 2.1178 -2.4059 2.3183 28 1 3.1783 -3.5274 3.2048 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396094862.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:13 Heat of formation + Delta-G solvation = -21.158543 kcal Electronic energy + Delta-G solvation = -16151.949434 eV Core-core repulsion = 13195.764273 eV Total energy + Delta-G solvation = -2956.185161 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.24442 -40.80288 -37.66991 -36.96788 -35.75357 -33.97194 -33.23268 -30.14493 -28.04175 -27.16419 -24.80122 -23.39812 -22.13471 -19.96541 -19.69928 -18.63766 -18.53975 -17.03319 -16.98326 -16.16354 -15.58742 -15.51236 -14.77204 -14.45109 -14.33718 -13.80531 -13.52218 -13.30787 -12.85561 -12.71408 -12.59404 -12.43510 -12.29096 -12.29002 -11.75993 -11.65039 -11.42953 -11.30093 -10.62083 -10.26877 -10.10084 -8.23951 -6.36287 -1.15268 -0.17143 0.36437 0.38142 1.40315 1.42222 1.45037 1.53909 2.33654 2.49589 3.10400 3.24854 3.49359 3.76515 3.85381 3.91760 4.06466 4.37303 4.54928 4.68145 4.73198 4.98705 5.04591 5.17021 5.34296 5.53907 5.65033 5.70326 6.05853 6.54852 6.76193 7.33493 8.85714 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.021545 B = 0.006584 C = 0.005595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.280858 B = 4251.890951 C = 5003.265477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.019 3.981 3 Si 0.955 3.045 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.044 3.956 10 C 0.021 3.979 11 C -0.125 4.125 12 C -0.036 4.036 13 C -0.080 4.080 14 N 0.039 4.961 15 O -0.179 6.179 16 O -0.183 6.183 17 C -0.029 4.029 18 C -0.112 4.112 19 C 0.014 3.986 20 Cl -0.189 7.189 21 H 0.266 0.734 22 H 0.018 0.982 23 H 0.034 0.966 24 H 0.159 0.841 25 H 0.171 0.829 26 H 0.166 0.834 27 H 0.111 0.889 28 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.460 -6.939 1.769 9.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.181 4.181 3 Si 0.780 3.220 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.564 4.564 8 H 0.079 0.921 9 C 0.007 3.993 10 C 0.020 3.980 11 C -0.144 4.144 12 C -0.055 4.055 13 C -0.164 4.164 14 N 0.553 4.447 15 O -0.392 6.392 16 O -0.396 6.396 17 C -0.048 4.048 18 C -0.113 4.113 19 C -0.048 4.048 20 Cl -0.162 7.162 21 H 0.075 0.925 22 H 0.036 0.964 23 H 0.052 0.948 24 H 0.176 0.824 25 H 0.188 0.812 26 H 0.184 0.816 27 H 0.129 0.871 28 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.760 -6.372 1.837 8.163 hybrid contribution 0.261 0.627 -0.096 0.686 sum 5.021 -5.745 1.741 7.826 Atomic orbital electron populations 1.70050 1.07463 1.27979 1.50342 1.25712 0.95486 1.02461 0.94475 0.85544 0.79172 0.79568 0.77691 1.18831 1.20823 1.20554 1.21191 0.93092 0.90197 1.51942 0.92148 1.18387 0.92784 0.89778 0.98349 1.20954 0.92063 0.92299 0.92657 1.21301 0.98225 0.95501 0.99344 1.21223 0.92745 0.94272 0.97274 1.21020 1.01932 0.95489 0.97916 1.43739 0.99856 1.01044 1.00017 1.94491 1.64264 1.59379 1.21101 1.94497 1.57108 1.66804 1.21158 1.20936 0.93890 0.92385 0.97594 1.19584 0.98883 0.97489 0.95367 1.23296 0.89559 0.98701 0.93222 1.98712 1.48253 1.81948 1.87297 0.92488 0.96411 0.94831 0.82386 0.81196 0.81611 0.87104 0.85162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.41 13.29 21.45 0.28 -49.12 15 2 C 0.02 0.94 5.46 84.66 0.46 1.40 15 3 Si 0.95 39.61 29.54 68.60 2.03 41.64 15 4 H -0.26 -10.55 7.11 99.48 0.71 -9.84 15 5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 15 6 H -0.28 -11.49 7.11 99.48 0.71 -10.78 15 7 C -0.53 -25.11 8.32 25.60 0.21 -24.90 15 8 H 0.06 2.82 7.74 -2.91 -0.02 2.80 15 9 C 0.04 1.91 4.42 29.10 0.13 2.04 15 10 C 0.02 0.73 5.07 -19.87 -0.10 0.63 15 11 C -0.13 -3.75 9.68 22.27 0.22 -3.54 15 12 C -0.04 -0.97 9.55 22.27 0.21 -0.76 15 13 C -0.08 -2.33 6.85 36.37 0.25 -2.08 15 14 N 0.04 1.21 4.45 -46.46 -0.21 1.00 15 15 O -0.18 -5.61 18.45 18.89 0.35 -5.26 15 16 O -0.18 -5.81 18.45 18.89 0.35 -5.46 15 17 C -0.03 -0.80 9.21 22.27 0.21 -0.60 15 18 C -0.11 -3.46 5.26 -19.87 -0.10 -3.56 15 19 C 0.01 0.41 6.02 71.24 0.43 0.84 15 20 Cl -0.19 -5.80 28.89 -2.72 -0.08 -5.88 15 21 H 0.27 13.60 8.31 -92.71 -0.77 12.83 15 22 H 0.02 0.83 8.05 -2.39 -0.02 0.81 15 23 H 0.03 1.56 6.77 -2.39 -0.02 1.54 15 24 H 0.16 4.31 8.06 -2.91 -0.02 4.29 15 25 H 0.17 3.74 7.61 -2.91 -0.02 3.72 15 26 H 0.17 3.93 7.61 -2.91 -0.02 3.91 15 27 H 0.11 3.81 6.16 -2.39 -0.01 3.80 15 28 H 0.13 2.88 8.08 -2.39 -0.02 2.86 15 Total: -1.00 -54.49 272.63 5.82 -48.67 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: 1.19 Total: 4.94 kcal Atomic # 6 Polarization: -32.43 SS G_CDS: 1.91 Total: -30.52 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 0.08 Total: -48.13 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.70 Total: -10.72 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Atomic # 17 Polarization: -5.80 SS G_CDS: -0.08 Total: -5.88 kcal Total: -54.49 5.82 -48.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396094862.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.508 kcal (2) G-P(sol) polarization free energy of solvation -54.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds