Wall clock time and date at job start Mon Mar 30 2020 06:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00131 * 2 1 4 4 H 1.48500 * 109.47099 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47241 * 300.00103 * 3 2 1 6 6 H 1.48503 * 109.46980 * 60.00244 * 3 2 1 7 7 C 1.37881 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99585 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00340 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47297 * 179.97438 * 9 7 2 11 11 C 1.38260 * 119.99683 * 100.85537 * 10 9 7 12 12 C 1.38219 * 119.99828 * 179.76515 * 11 10 9 13 13 C 1.38253 * 119.99820 * 0.48883 * 12 11 10 14 14 C 1.50694 * 120.00133 * 179.76758 * 13 12 11 15 15 Cl 1.80297 * 109.47129 * 270.01797 * 14 13 12 16 16 C 1.38219 * 119.99949 * 359.78430 * 13 12 11 17 17 C 1.38208 * 120.00257 * 281.12868 * 10 9 7 18 18 N 1.48020 * 119.99592 * 0.02562 * 17 10 9 19 19 O 1.21801 * 119.99901 * 185.85338 * 18 17 10 20 20 O 1.21797 * 120.00458 * 5.85451 * 18 17 10 21 21 H 0.97002 * 119.99612 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.47207 * 299.99767 * 9 7 2 23 23 H 1.09003 * 109.47494 * 59.99661 * 9 7 2 24 24 H 1.07999 * 120.00086 * 0.02562 * 11 10 9 25 25 H 1.07994 * 120.00087 * 180.25828 * 12 11 10 26 26 H 1.08999 * 109.47099 * 30.02131 * 14 13 12 27 27 H 1.09008 * 109.47233 * 150.01708 * 14 13 12 28 28 H 1.07997 * 120.00086 * 179.97438 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2303 -3.6446 -0.0027 11 6 2.5081 -4.3176 1.1727 12 6 3.4026 -5.3714 1.1708 13 6 4.0271 -5.7458 -0.0044 14 6 5.0063 -6.8913 -0.0054 15 17 6.6646 -6.2646 0.3232 16 6 3.7536 -5.0694 -1.1783 17 6 2.8550 -4.0188 -1.1774 18 7 2.5625 -3.2939 -2.4344 19 8 3.0292 -3.6889 -3.4879 20 8 1.8552 -2.3026 -2.4154 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5575 0.8880 23 1 0.6246 -2.5563 -0.8919 24 1 2.0229 -4.0227 2.0914 25 1 3.6164 -5.8997 2.0881 26 1 4.7286 -7.6074 0.7680 27 1 4.9897 -7.3826 -0.9783 28 1 4.2418 -5.3616 -2.0962 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396095927.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:39 Heat of formation + Delta-G solvation = 3.958450 kcal Electronic energy + Delta-G solvation = -16447.610838 eV Core-core repulsion = 13492.514831 eV Total energy + Delta-G solvation = -2955.096007 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.36577 -39.24228 -36.20758 -35.72573 -33.94472 -32.31277 -31.45674 -28.99172 -26.30468 -25.46156 -22.86937 -22.15374 -20.81086 -18.10862 -17.58666 -16.83791 -16.26170 -15.70529 -15.54071 -14.69544 -14.56264 -14.27310 -13.57338 -13.19199 -12.79384 -12.16211 -11.95514 -11.77336 -11.47246 -10.87220 -10.80335 -10.65050 -10.56666 -10.50988 -10.18382 -9.97572 -9.63873 -9.54837 -9.21190 -8.50661 -8.38821 -6.09291 -4.09345 0.51602 1.06514 1.96708 2.23316 2.38133 3.30547 3.38834 3.42110 3.71853 4.30868 4.43003 4.54575 4.83555 4.97480 5.08909 5.24267 5.30530 5.36551 5.65189 5.85387 6.17721 6.26142 6.41075 6.72163 7.15147 7.34950 7.51350 7.80667 8.13588 8.58252 8.86784 9.50602 11.01565 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.024715 B = 0.006358 C = 0.005980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.647050 B = 4402.802768 C = 4681.304993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.070 3.930 3 Si 0.896 3.104 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.284 1.284 7 C -0.494 4.494 8 H 0.052 0.948 9 C 0.034 3.966 10 C 0.036 3.964 11 C -0.128 4.128 12 C -0.055 4.055 13 C -0.143 4.143 14 C 0.019 3.981 15 Cl -0.180 7.180 16 C -0.039 4.039 17 C -0.049 4.049 18 N 0.022 4.978 19 O -0.240 6.240 20 O -0.074 6.074 21 H 0.263 0.737 22 H 0.035 0.965 23 H 0.065 0.935 24 H 0.145 0.855 25 H 0.134 0.866 26 H 0.104 0.896 27 H 0.102 0.898 28 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.847 -13.548 2.747 15.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.133 4.133 3 Si 0.724 3.276 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.210 1.210 7 C -0.532 4.532 8 H 0.070 0.930 9 C -0.002 4.002 10 C 0.035 3.965 11 C -0.146 4.146 12 C -0.073 4.073 13 C -0.144 4.144 14 C -0.044 4.044 15 Cl -0.153 7.153 16 C -0.058 4.058 17 C -0.133 4.133 18 N 0.537 4.463 19 O -0.432 6.432 20 O -0.307 6.307 21 H 0.073 0.927 22 H 0.054 0.946 23 H 0.083 0.917 24 H 0.163 0.837 25 H 0.152 0.848 26 H 0.123 0.877 27 H 0.121 0.879 28 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.083 -13.878 3.224 15.911 hybrid contribution 0.513 1.130 -0.338 1.286 sum 7.596 -12.748 2.886 15.117 Atomic orbital electron populations 1.69930 1.05984 1.26944 1.49315 1.24851 0.94837 0.99012 0.94615 0.86463 0.80006 0.83429 0.77705 1.19876 1.20551 1.20993 1.20678 0.92346 0.88956 1.51220 0.93004 1.18905 0.92488 0.88634 1.00203 1.20912 0.92620 0.93654 0.89338 1.21187 0.99576 0.95746 0.98100 1.21338 0.93542 0.95279 0.97163 1.19382 1.01261 1.00394 0.93406 1.23050 0.81436 0.94742 1.05137 1.98745 1.29936 1.89948 1.96700 1.20714 0.93972 0.91905 0.99205 1.20907 1.06703 0.99783 0.85895 1.43468 1.00105 1.00877 1.01899 1.94420 1.56769 1.72463 1.19534 1.94741 1.30652 1.12361 1.92940 0.92681 0.94636 0.91714 0.83746 0.84818 0.87722 0.87922 0.83911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.17 13.29 55.43 0.74 -24.44 15 2 C 0.07 1.92 5.46 -17.82 -0.10 1.82 15 3 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 15 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 15 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 7 C -0.49 -13.28 7.43 -34.44 -0.26 -13.53 15 8 H 0.05 1.42 7.74 -52.49 -0.41 1.02 15 9 C 0.03 0.83 4.40 -29.04 -0.13 0.70 15 10 C 0.04 0.73 5.08 -104.62 -0.53 0.19 15 11 C -0.13 -2.02 9.67 -39.58 -0.38 -2.40 15 12 C -0.05 -0.69 9.70 -39.58 -0.38 -1.08 15 13 C -0.14 -1.82 5.26 -104.63 -0.55 -2.37 15 14 C 0.02 0.17 6.78 36.00 0.24 0.42 15 15 Cl -0.18 -2.07 29.13 -51.86 -1.51 -3.58 15 16 C -0.04 -0.61 9.21 -39.58 -0.36 -0.97 15 17 C -0.05 -0.97 6.81 -79.95 -0.54 -1.52 15 18 N 0.02 0.50 4.45 33.96 0.15 0.65 15 19 O -0.24 -5.27 18.46 -29.46 -0.54 -5.82 15 20 O -0.07 -1.87 14.18 -29.46 -0.42 -2.28 15 21 H 0.26 7.10 8.31 -40.82 -0.34 6.76 15 22 H 0.04 0.87 8.00 -51.93 -0.42 0.45 15 23 H 0.07 1.71 6.17 -51.93 -0.32 1.39 15 24 H 0.14 2.06 8.03 -52.49 -0.42 1.64 15 25 H 0.13 1.22 8.06 -52.49 -0.42 0.79 15 26 H 0.10 0.70 8.09 -51.93 -0.42 0.28 15 27 H 0.10 0.78 8.09 -51.92 -0.42 0.36 15 28 H 0.14 2.05 7.62 -52.49 -0.40 1.65 15 LS Contribution 270.27 15.07 4.07 4.07 Total: -1.00 -30.14 270.27 -7.89 -38.03 By element: Atomic # 1 Polarization: -2.00 SS G_CDS: -2.36 Total: -4.36 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -2.99 Total: -18.73 kcal Atomic # 7 Polarization: -24.67 SS G_CDS: 0.89 Total: -23.79 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -0.96 Total: -8.10 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -1.51 Total: -3.58 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.14 -7.89 -38.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396095927.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.987 kcal (2) G-P(sol) polarization free energy of solvation -30.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds