Wall clock time and date at job start Mon Mar 30 2020 06:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86794 * 119.99802 * 2 1 4 4 H 1.48497 * 109.47199 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47364 * 299.99973 * 3 2 1 6 6 H 1.48505 * 109.47375 * 60.00166 * 3 2 1 7 7 C 1.37877 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99768 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00003 * 359.72118 * 7 2 1 10 10 C 1.50694 * 109.46861 * 180.02562 * 9 7 2 11 11 C 1.38260 * 120.00193 * 101.22973 * 10 9 7 12 12 C 1.38216 * 120.00338 * 179.97438 * 11 10 9 13 13 C 1.50696 * 120.00063 * 179.97438 * 12 11 10 14 14 Cl 1.80292 * 109.47089 * 90.00117 * 13 12 11 15 15 C 1.38256 * 119.99763 * 359.95953 * 12 11 10 16 16 C 1.38217 * 120.00043 * 359.97438 * 15 12 11 17 17 C 1.38215 * 120.00232 * 280.95257 * 10 9 7 18 18 N 1.48017 * 119.99448 * 0.02562 * 17 10 9 19 19 O 1.21807 * 119.99874 * 185.70929 * 18 17 10 20 20 O 1.21800 * 120.00336 * 5.70978 * 18 17 10 21 21 H 0.97000 * 119.99859 * 359.97438 * 1 2 3 22 22 H 1.09008 * 109.46813 * 300.00290 * 9 7 2 23 23 H 1.08998 * 109.46956 * 60.00022 * 9 7 2 24 24 H 1.07998 * 119.99721 * 359.97438 * 11 10 9 25 25 H 1.09004 * 109.46848 * 210.00162 * 13 12 11 26 26 H 1.09001 * 109.47232 * 329.99704 * 13 12 11 27 27 H 1.07997 * 119.99875 * 180.02562 * 15 12 11 28 28 H 1.08000 * 119.99851 * 180.02562 * 16 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 0.0052 10 6 2.2304 -3.6445 0.0040 11 6 2.5069 -4.3189 1.1789 12 6 3.4047 -5.3698 1.1777 13 6 3.7066 -6.1044 2.4584 14 17 2.5579 -7.4813 2.6464 15 6 4.0257 -5.7471 0.0014 16 6 3.7482 -5.0739 -1.1733 17 6 2.8479 -4.0246 -1.1727 18 7 2.5476 -3.3062 -2.4315 19 8 3.0100 -3.7050 -3.4855 20 8 1.8382 -2.3163 -2.4135 21 1 -0.4850 0.8401 0.0004 22 1 0.6281 -2.5551 0.8980 23 1 0.6207 -2.5586 -0.8820 24 1 2.0214 -4.0246 2.0975 25 1 4.7276 -6.4847 2.4271 26 1 3.5984 -5.4231 3.3023 27 1 4.7269 -6.5685 0.0004 28 1 4.2329 -5.3689 -2.0922 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396098399.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:37 Heat of formation + Delta-G solvation = 4.000819 kcal Electronic energy + Delta-G solvation = -16432.373027 eV Core-core repulsion = 13477.278858 eV Total energy + Delta-G solvation = -2955.094170 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.35776 -39.25313 -36.20343 -35.73498 -33.81226 -32.58697 -31.54821 -28.03630 -27.60777 -24.45314 -23.58416 -21.95013 -20.56058 -18.33008 -17.70626 -16.83495 -16.22443 -15.55785 -15.47980 -14.64814 -14.59791 -14.28667 -13.55948 -13.03859 -12.78120 -12.43651 -12.01984 -11.80793 -11.36026 -10.88617 -10.76744 -10.68298 -10.58275 -10.53016 -10.18205 -9.98204 -9.66469 -9.54186 -9.10896 -8.54426 -8.39812 -6.09430 -4.09722 0.36519 1.36920 1.76528 2.26907 2.38482 3.29287 3.37718 3.40004 3.72315 4.30384 4.41772 4.53549 4.86731 4.90936 5.08157 5.28031 5.31725 5.42731 5.68457 5.95163 6.12315 6.24790 6.39223 6.72619 7.15739 7.36025 7.52571 7.80008 8.13604 8.58497 8.86384 9.50031 11.01429 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.021669 B = 0.006838 C = 0.005710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.837101 B = 4093.845630 C = 4902.858709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.070 3.930 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.284 1.284 7 C -0.494 4.494 8 H 0.051 0.949 9 C 0.035 3.965 10 C 0.027 3.973 11 C -0.106 4.106 12 C -0.068 4.068 13 C 0.008 3.992 14 Cl -0.174 7.174 15 C -0.130 4.130 16 C -0.061 4.061 17 C -0.041 4.041 18 N 0.021 4.979 19 O -0.240 6.240 20 O -0.074 6.074 21 H 0.264 0.736 22 H 0.035 0.965 23 H 0.066 0.934 24 H 0.143 0.857 25 H 0.105 0.895 26 H 0.108 0.892 27 H 0.137 0.863 28 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.237 -11.953 4.869 14.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.133 4.133 3 Si 0.724 3.276 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.210 1.210 7 C -0.533 4.533 8 H 0.070 0.930 9 C -0.001 4.001 10 C 0.026 3.974 11 C -0.125 4.125 12 C -0.069 4.069 13 C -0.055 4.055 14 Cl -0.147 7.147 15 C -0.149 4.149 16 C -0.080 4.080 17 C -0.124 4.124 18 N 0.535 4.465 19 O -0.432 6.432 20 O -0.307 6.307 21 H 0.073 0.927 22 H 0.053 0.947 23 H 0.083 0.917 24 H 0.161 0.839 25 H 0.123 0.877 26 H 0.126 0.874 27 H 0.154 0.846 28 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.260 -12.427 5.350 15.354 hybrid contribution 0.417 1.029 -0.372 1.171 sum 7.677 -11.397 4.978 14.615 Atomic orbital electron populations 1.69937 1.05980 1.26941 1.49230 1.24859 0.94833 0.99004 0.94653 0.86467 0.79926 0.83490 0.77721 1.19933 1.20560 1.20993 1.20676 0.92290 0.89020 1.51271 0.93049 1.18885 0.92459 0.88555 1.00219 1.20788 0.93307 0.94170 0.89174 1.21056 0.98097 0.95016 0.98352 1.20018 0.96714 0.95607 0.94564 1.23213 0.95087 0.89882 0.97279 1.98742 1.66767 1.51122 1.98071 1.20751 1.02114 1.01076 0.90948 1.20872 0.94785 0.92535 0.99797 1.21049 1.06152 0.99596 0.85650 1.43504 1.00152 1.00875 1.01974 1.94419 1.57048 1.72141 1.19548 1.94740 1.30450 1.12450 1.93053 0.92669 0.94703 0.91662 0.83909 0.87688 0.87368 0.84556 0.83790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.15 13.29 55.43 0.74 -24.41 15 2 C 0.07 1.90 5.46 -17.81 -0.10 1.80 15 3 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 15 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 7 C -0.49 -13.20 7.45 -34.44 -0.26 -13.46 15 8 H 0.05 1.39 7.74 -52.49 -0.41 0.98 15 9 C 0.04 0.86 4.40 -29.04 -0.13 0.73 15 10 C 0.03 0.54 5.08 -104.63 -0.53 0.01 15 11 C -0.11 -1.71 9.32 -39.58 -0.37 -2.08 15 12 C -0.07 -0.88 5.26 -104.63 -0.55 -1.43 15 13 C 0.01 0.07 6.78 36.00 0.24 0.32 15 14 Cl -0.17 -1.92 29.13 -51.86 -1.51 -3.43 15 15 C -0.13 -1.64 9.70 -39.58 -0.38 -2.02 15 16 C -0.06 -0.95 9.56 -39.58 -0.38 -1.33 15 17 C -0.04 -0.80 6.82 -79.95 -0.54 -1.35 15 18 N 0.02 0.47 4.45 33.96 0.15 0.62 15 19 O -0.24 -5.26 18.46 -29.46 -0.54 -5.81 15 20 O -0.07 -1.87 14.19 -29.46 -0.42 -2.28 15 21 H 0.26 7.10 8.31 -40.82 -0.34 6.76 15 22 H 0.03 0.86 7.99 -51.92 -0.41 0.44 15 23 H 0.07 1.74 6.15 -51.93 -0.32 1.42 15 24 H 0.14 2.11 8.03 -52.49 -0.42 1.68 15 25 H 0.10 0.73 8.09 -51.93 -0.42 0.31 15 26 H 0.11 0.87 8.09 -51.93 -0.42 0.45 15 27 H 0.14 1.25 8.06 -52.49 -0.42 0.83 15 28 H 0.14 2.01 7.62 -52.49 -0.40 1.61 15 LS Contribution 270.28 15.07 4.07 4.07 Total: -1.00 -29.92 270.28 -7.89 -37.81 By element: Atomic # 1 Polarization: -1.66 SS G_CDS: -2.36 Total: -4.02 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -3.00 Total: -18.80 kcal Atomic # 7 Polarization: -24.68 SS G_CDS: 0.89 Total: -23.80 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: -0.96 Total: -8.09 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 17 Polarization: -1.92 SS G_CDS: -1.51 Total: -3.43 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.92 -7.89 -37.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396098399.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.812 kcal (2) G-P(sol) polarization free energy of solvation -29.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds