Wall clock time and date at job start Mon Mar 30 2020 06:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86794 * 119.99802 * 2 1 4 4 H 1.48497 * 109.47199 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47364 * 299.99973 * 3 2 1 6 6 H 1.48505 * 109.47375 * 60.00166 * 3 2 1 7 7 C 1.37877 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99768 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00003 * 359.72118 * 7 2 1 10 10 C 1.50694 * 109.46861 * 180.02562 * 9 7 2 11 11 C 1.38260 * 120.00193 * 101.22973 * 10 9 7 12 12 C 1.38216 * 120.00338 * 179.97438 * 11 10 9 13 13 C 1.50696 * 120.00063 * 179.97438 * 12 11 10 14 14 Cl 1.80292 * 109.47089 * 90.00117 * 13 12 11 15 15 C 1.38256 * 119.99763 * 359.95953 * 12 11 10 16 16 C 1.38217 * 120.00043 * 359.97438 * 15 12 11 17 17 C 1.38215 * 120.00232 * 280.95257 * 10 9 7 18 18 N 1.48017 * 119.99448 * 0.02562 * 17 10 9 19 19 O 1.21807 * 119.99874 * 185.70929 * 18 17 10 20 20 O 1.21800 * 120.00336 * 5.70978 * 18 17 10 21 21 H 0.97000 * 119.99859 * 359.97438 * 1 2 3 22 22 H 1.09008 * 109.46813 * 300.00290 * 9 7 2 23 23 H 1.08998 * 109.46956 * 60.00022 * 9 7 2 24 24 H 1.07998 * 119.99721 * 359.97438 * 11 10 9 25 25 H 1.09004 * 109.46848 * 210.00162 * 13 12 11 26 26 H 1.09001 * 109.47232 * 329.99704 * 13 12 11 27 27 H 1.07997 * 119.99875 * 180.02562 * 15 12 11 28 28 H 1.08000 * 119.99851 * 180.02562 * 16 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 0.0052 10 6 2.2304 -3.6445 0.0040 11 6 2.5069 -4.3189 1.1789 12 6 3.4047 -5.3698 1.1777 13 6 3.7066 -6.1044 2.4584 14 17 2.5579 -7.4813 2.6464 15 6 4.0257 -5.7471 0.0014 16 6 3.7482 -5.0739 -1.1733 17 6 2.8479 -4.0246 -1.1727 18 7 2.5476 -3.3062 -2.4315 19 8 3.0100 -3.7050 -3.4855 20 8 1.8382 -2.3163 -2.4135 21 1 -0.4850 0.8401 0.0004 22 1 0.6281 -2.5551 0.8980 23 1 0.6207 -2.5586 -0.8820 24 1 2.0214 -4.0246 2.0975 25 1 4.7276 -6.4847 2.4271 26 1 3.5984 -5.4231 3.3023 27 1 4.7269 -6.5685 0.0004 28 1 4.2329 -5.3689 -2.0922 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396098399.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:37 Heat of formation + Delta-G solvation = -12.582177 kcal Electronic energy + Delta-G solvation = -16433.092120 eV Core-core repulsion = 13477.278858 eV Total energy + Delta-G solvation = -2955.813262 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.03314 -40.58651 -37.51183 -37.03070 -35.53764 -34.01992 -33.10269 -29.49807 -29.13865 -25.94192 -25.28474 -23.38594 -22.03459 -19.87981 -19.32930 -18.71122 -18.12455 -16.85500 -16.79462 -16.25826 -15.61777 -15.51110 -14.60848 -14.52561 -14.26994 -13.77870 -13.64134 -13.45075 -12.90317 -12.76798 -12.46622 -12.33824 -11.99226 -11.82588 -11.64433 -11.59310 -11.38137 -11.27320 -10.51934 -10.36354 -9.94687 -8.17484 -6.24302 -1.10278 0.11666 0.31649 0.70882 1.37441 1.40171 1.42994 1.50592 2.38323 2.52208 3.17878 3.32013 3.49378 3.60266 3.86728 4.02266 4.32961 4.36355 4.51663 4.72529 4.85163 4.88087 5.16083 5.24355 5.36068 5.56596 5.66664 5.72683 6.11649 6.74585 6.83465 7.39458 8.94508 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.021669 B = 0.006838 C = 0.005710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.837101 B = 4093.845630 C = 4902.858709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.017 3.983 3 Si 0.956 3.044 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.498 4.498 8 H 0.042 0.958 9 C 0.045 3.955 10 C -0.003 4.003 11 C -0.112 4.112 12 C -0.046 4.046 13 C 0.010 3.990 14 Cl -0.184 7.184 15 C -0.104 4.104 16 C -0.057 4.057 17 C -0.066 4.066 18 N 0.025 4.975 19 O -0.198 6.198 20 O -0.168 6.168 21 H 0.264 0.736 22 H 0.017 0.983 23 H 0.029 0.971 24 H 0.150 0.850 25 H 0.145 0.855 26 H 0.124 0.876 27 H 0.190 0.810 28 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.326 -14.530 6.054 18.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.182 4.182 3 Si 0.781 3.219 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.536 4.536 8 H 0.060 0.940 9 C 0.009 3.991 10 C -0.004 4.004 11 C -0.131 4.131 12 C -0.046 4.046 13 C -0.052 4.052 14 Cl -0.157 7.157 15 C -0.122 4.122 16 C -0.076 4.076 17 C -0.150 4.150 18 N 0.535 4.465 19 O -0.406 6.406 20 O -0.380 6.380 21 H 0.073 0.927 22 H 0.035 0.965 23 H 0.047 0.953 24 H 0.167 0.833 25 H 0.163 0.837 26 H 0.142 0.858 27 H 0.208 0.792 28 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 10.244 -14.870 6.627 19.234 hybrid contribution -0.355 1.496 -0.769 1.719 sum 9.888 -13.374 5.858 17.634 Atomic orbital electron populations 1.70050 1.07382 1.27623 1.51151 1.25654 0.95604 1.02340 0.94620 0.85547 0.78774 0.79708 0.77881 1.19473 1.20826 1.19633 1.20853 0.91859 0.90506 1.50381 0.93963 1.18482 0.92964 0.90138 0.97556 1.20488 0.94171 0.94454 0.91312 1.21173 0.99103 0.95853 0.96994 1.20414 0.93963 0.93609 0.96647 1.23464 0.96547 0.89601 0.95570 1.98757 1.67514 1.51480 1.97992 1.21390 1.01079 1.00670 0.89105 1.21286 0.93319 0.90888 1.02128 1.21324 1.08555 1.01341 0.83780 1.44019 0.99004 1.00500 1.03012 1.94338 1.54663 1.70841 1.20752 1.94785 1.34247 1.15258 1.93701 0.92676 0.96460 0.95311 0.83272 0.83656 0.85762 0.79244 0.81562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.58 13.29 21.45 0.28 -55.30 15 2 C 0.02 0.96 5.46 84.65 0.46 1.42 15 3 Si 0.96 45.14 29.54 68.60 2.03 47.16 15 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 15 5 H -0.28 -13.33 7.11 99.48 0.71 -12.62 15 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 15 7 C -0.50 -28.04 7.45 25.60 0.19 -27.85 15 8 H 0.04 2.38 7.74 -2.91 -0.02 2.36 15 9 C 0.05 2.37 4.40 29.10 0.13 2.50 15 10 C 0.00 -0.12 5.08 -19.87 -0.10 -0.22 15 11 C -0.11 -3.45 9.32 22.27 0.21 -3.24 15 12 C -0.05 -0.97 5.26 -19.87 -0.10 -1.08 15 13 C 0.01 0.13 6.78 71.23 0.48 0.62 15 14 Cl -0.18 -3.33 29.13 -2.72 -0.08 -3.41 15 15 C -0.10 -2.03 9.70 22.27 0.22 -1.81 15 16 C -0.06 -1.57 9.56 22.27 0.21 -1.36 15 17 C -0.07 -2.59 6.82 36.37 0.25 -2.34 15 18 N 0.03 1.17 4.45 -46.47 -0.21 0.96 15 19 O -0.20 -8.56 18.46 18.88 0.35 -8.21 15 20 O -0.17 -9.13 14.19 18.89 0.27 -8.86 15 21 H 0.26 14.99 8.31 -92.71 -0.77 14.22 15 22 H 0.02 0.92 7.99 -2.38 -0.02 0.90 15 23 H 0.03 1.70 6.15 -2.39 -0.01 1.68 15 24 H 0.15 4.28 8.03 -2.91 -0.02 4.26 15 25 H 0.15 0.91 8.09 -2.38 -0.02 0.89 15 26 H 0.12 1.37 8.09 -2.39 -0.02 1.35 15 27 H 0.19 1.86 8.06 -2.91 -0.02 1.83 15 28 H 0.17 3.85 7.62 -2.91 -0.02 3.83 15 Total: -1.00 -71.23 270.28 5.77 -65.46 By element: Atomic # 1 Polarization: -5.62 SS G_CDS: 1.19 Total: -4.44 kcal Atomic # 6 Polarization: -35.31 SS G_CDS: 1.94 Total: -33.37 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.08 Total: -54.33 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: 0.62 Total: -17.08 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Atomic # 17 Polarization: -3.33 SS G_CDS: -0.08 Total: -3.41 kcal Total: -71.23 5.77 -65.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396098399.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.878 kcal (2) G-P(sol) polarization free energy of solvation -71.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds