Wall clock time and date at job start Mon Mar 30 2020 06:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 119.99767 * 2 1 4 4 H 1.48504 * 109.47017 * 239.99524 * 3 2 1 5 5 H 1.48498 * 109.47554 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47030 * 120.00093 * 3 2 1 7 7 C 1.37875 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00059 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.46951 * 180.02562 * 9 7 2 11 11 C 1.38265 * 119.99844 * 89.99889 * 10 9 7 12 12 C 1.38215 * 119.99330 * 179.97438 * 11 10 9 13 13 C 1.50706 * 119.99316 * 179.97438 * 12 11 10 14 14 Cl 1.80298 * 109.46955 * 90.00430 * 13 12 11 15 15 C 1.38253 * 120.00403 * 0.02872 * 12 11 10 16 16 C 1.38215 * 119.99879 * 359.97145 * 15 12 11 17 17 N 1.48020 * 119.99489 * 180.02562 * 16 15 12 18 18 O 1.21803 * 119.99567 * 179.97438 * 17 16 15 19 19 O 1.21799 * 120.00272 * 359.97438 * 17 16 15 20 20 C 1.38208 * 119.99804 * 270.01763 * 10 9 7 21 21 H 0.97000 * 120.00009 * 0.02562 * 1 2 3 22 22 H 1.08990 * 109.47329 * 59.99761 * 9 7 2 23 23 H 1.09006 * 109.47198 * 299.99651 * 9 7 2 24 24 H 1.07995 * 120.00136 * 359.72530 * 11 10 9 25 25 H 1.08998 * 109.46941 * 210.00289 * 13 12 11 26 26 H 1.08998 * 109.47482 * 330.00438 * 13 12 11 27 27 H 1.08005 * 119.99906 * 180.02562 * 15 12 11 28 28 H 1.07992 * 120.00441 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2304 -3.6446 0.0018 11 6 2.6787 -4.1695 1.1998 12 6 3.5765 -5.2203 1.2009 13 6 4.0656 -5.7921 2.5067 14 17 2.9682 -7.1243 3.0280 15 6 4.0266 -5.7462 0.0041 16 6 3.5784 -5.2215 -1.1934 17 7 4.0600 -5.7850 -2.4746 18 8 3.6647 -5.3229 -3.5300 19 8 4.8515 -6.7107 -2.4736 20 6 2.6806 -4.1701 -1.1946 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8904 24 1 2.3305 -3.7557 2.1346 25 1 5.0749 -6.1825 2.3769 26 1 4.0734 -5.0098 3.2657 27 1 4.7278 -6.5677 0.0050 28 1 2.3304 -3.7602 -2.1303 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396101229.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:40 Heat of formation + Delta-G solvation = -22.694898 kcal Electronic energy + Delta-G solvation = -15928.140493 eV Core-core repulsion = 12971.888710 eV Total energy + Delta-G solvation = -2956.251783 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.29910 -40.75050 -37.72252 -37.04806 -35.73925 -33.97544 -33.53578 -29.49227 -28.02419 -27.61896 -25.51095 -23.10256 -21.92846 -19.78622 -19.68047 -18.69219 -18.53522 -17.52268 -16.88638 -16.62452 -15.56524 -15.35890 -14.58217 -14.52036 -14.39246 -13.65955 -13.46713 -13.24231 -13.14993 -12.74436 -12.64875 -12.53010 -12.33279 -12.32724 -11.80120 -11.70912 -11.48918 -11.35205 -10.64613 -10.44186 -9.98719 -8.26360 -6.39372 -1.21638 -0.19094 0.32170 0.33351 1.38819 1.40915 1.42821 1.49848 2.32348 2.46597 3.06860 3.17783 3.44175 3.68784 3.85099 3.97816 4.00053 4.32400 4.45260 4.65048 4.69473 4.96775 4.98484 5.15028 5.26261 5.50446 5.60437 5.66571 6.04926 6.50021 6.72199 7.30425 8.83294 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.016232 B = 0.006588 C = 0.005078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.550897 B = 4249.431110 C = 5512.591306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.012 3.988 3 Si 0.960 3.040 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.535 4.535 8 H 0.059 0.941 9 C 0.056 3.944 10 C -0.051 4.051 11 C -0.043 4.043 12 C -0.096 4.096 13 C 0.018 3.982 14 Cl -0.188 7.188 15 C -0.047 4.047 16 C -0.054 4.054 17 N 0.034 4.966 18 O -0.209 6.209 19 O -0.146 6.146 20 C -0.062 4.062 21 H 0.267 0.733 22 H 0.010 0.990 23 H 0.025 0.975 24 H 0.155 0.845 25 H 0.138 0.862 26 H 0.131 0.869 27 H 0.176 0.824 28 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.804 -10.820 6.390 15.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.187 4.187 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.573 4.573 8 H 0.077 0.923 9 C 0.019 3.981 10 C -0.052 4.052 11 C -0.061 4.061 12 C -0.097 4.097 13 C -0.044 4.044 14 Cl -0.162 7.162 15 C -0.066 4.066 16 C -0.137 4.137 17 N 0.550 4.450 18 O -0.414 6.414 19 O -0.369 6.369 20 C -0.081 4.081 21 H 0.076 0.924 22 H 0.028 0.972 23 H 0.044 0.956 24 H 0.173 0.827 25 H 0.156 0.844 26 H 0.150 0.850 27 H 0.193 0.807 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.295 -10.492 6.988 15.091 hybrid contribution -0.066 0.923 -0.846 1.254 sum 8.229 -9.569 6.142 14.036 Atomic orbital electron populations 1.70043 1.07568 1.28217 1.50534 1.25819 0.95651 1.02870 0.94374 0.85570 0.78367 0.78437 0.79152 1.19839 1.20855 1.18771 1.21285 0.93187 0.90850 1.51952 0.92309 1.18170 0.92555 0.89961 0.97442 1.20364 0.97383 0.95715 0.91721 1.21654 0.92670 0.92926 0.98900 1.19852 0.98565 0.96663 0.94624 1.23369 0.95656 0.91997 0.93403 1.98754 1.70468 1.55108 1.91836 1.21021 0.98207 0.98958 0.88432 1.21091 1.06624 1.02728 0.83267 1.43810 0.98600 0.99243 1.03351 1.94561 1.62089 1.64273 1.20463 1.94439 1.28427 1.19694 1.94358 1.20949 0.93845 0.92680 1.00646 0.92413 0.97205 0.95643 0.82740 0.84433 0.85045 0.80674 0.84689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.19 13.29 21.45 0.28 -51.90 15 2 C 0.01 0.65 5.46 84.65 0.46 1.12 15 3 Si 0.96 41.48 29.54 68.60 2.03 43.50 15 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 15 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 15 6 H -0.26 -10.78 7.11 99.48 0.71 -10.07 15 7 C -0.54 -27.59 9.09 25.60 0.23 -27.36 15 8 H 0.06 2.95 7.74 -2.91 -0.02 2.93 15 9 C 0.06 2.62 5.10 29.10 0.15 2.77 15 10 C -0.05 -1.90 5.07 -19.86 -0.10 -2.00 15 11 C -0.04 -1.25 9.36 22.27 0.21 -1.04 15 12 C -0.10 -2.16 5.26 -19.86 -0.10 -2.26 15 13 C 0.02 0.26 6.78 71.24 0.48 0.74 15 14 Cl -0.19 -3.64 29.13 -2.72 -0.08 -3.72 15 15 C -0.05 -1.15 9.21 22.27 0.21 -0.95 15 16 C -0.05 -1.73 6.85 36.37 0.25 -1.48 15 17 N 0.03 1.18 4.45 -46.46 -0.21 0.97 15 18 O -0.21 -7.92 18.45 18.88 0.35 -7.57 15 19 O -0.15 -4.69 18.45 18.89 0.35 -4.34 15 20 C -0.06 -2.25 9.21 22.27 0.21 -2.04 15 21 H 0.27 14.29 8.31 -92.71 -0.77 13.51 15 22 H 0.01 0.50 8.09 -2.39 -0.02 0.48 15 23 H 0.03 1.24 8.09 -2.38 -0.02 1.22 15 24 H 0.15 4.06 8.06 -2.91 -0.02 4.04 15 25 H 0.14 1.24 8.09 -2.39 -0.02 1.22 15 26 H 0.13 1.47 8.09 -2.39 -0.02 1.45 15 27 H 0.18 3.31 7.61 -2.91 -0.02 3.28 15 28 H 0.14 5.24 7.61 -2.91 -0.02 5.22 15 Total: -1.00 -60.50 277.69 5.89 -54.60 By element: Atomic # 1 Polarization: -0.22 SS G_CDS: 1.18 Total: 0.97 kcal Atomic # 6 Polarization: -34.49 SS G_CDS: 1.99 Total: -32.50 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: 0.08 Total: -50.94 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.70 Total: -11.91 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.50 kcal Atomic # 17 Polarization: -3.64 SS G_CDS: -0.08 Total: -3.72 kcal Total: -60.50 5.89 -54.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396101229.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.909 kcal (2) G-P(sol) polarization free energy of solvation -60.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds