Wall clock time and date at job start Mon Mar 30 2020 06:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00199 * 2 1 4 4 H 1.48505 * 109.47294 * 240.00051 * 3 2 1 5 5 H 1.48498 * 109.47148 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47272 * 120.00033 * 3 2 1 7 7 C 1.37874 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00512 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00016 * 359.97438 * 7 2 1 10 10 C 1.50700 * 109.47428 * 180.02562 * 9 7 2 11 11 C 1.38254 * 119.99868 * 264.86808 * 10 9 7 12 12 C 1.38215 * 120.00401 * 180.02562 * 11 10 9 13 13 C 1.38265 * 119.99330 * 0.07179 * 12 11 10 14 14 C 1.38207 * 120.00352 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00352 * 179.97438 * 14 13 12 16 16 Cl 1.80293 * 109.47419 * 89.99887 * 15 14 13 17 17 C 1.38214 * 120.00281 * 84.99928 * 10 9 7 18 18 N 1.48020 * 119.99455 * 359.97438 * 17 10 9 19 19 O 1.21797 * 120.00331 * 269.97514 * 18 17 10 20 20 O 1.21803 * 119.99979 * 89.97833 * 18 17 10 21 21 H 0.97000 * 119.99385 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46910 * 59.99991 * 9 7 2 23 23 H 1.09000 * 109.46909 * 299.99988 * 9 7 2 24 24 H 1.08001 * 120.00324 * 0.10893 * 11 10 9 25 25 H 1.07995 * 120.00479 * 180.34107 * 12 11 10 26 26 H 1.08000 * 119.99314 * 179.97438 * 13 12 11 27 27 H 1.09003 * 109.47255 * 210.00411 * 15 14 13 28 28 H 1.09001 * 109.46747 * 329.99800 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.5981 -4.2396 -1.1931 12 6 3.4958 -5.2906 -1.1931 13 6 4.0249 -5.7477 -0.0003 14 6 3.6565 -5.1536 1.1919 15 6 4.2327 -5.6522 2.4920 16 17 5.7509 -4.7524 2.8610 17 6 2.7587 -4.1022 1.1918 18 7 2.3631 -3.4666 2.4688 19 8 2.9995 -2.5229 2.9022 20 8 1.4011 -3.8874 3.0861 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8897 24 1 2.1850 -3.8824 -2.1248 25 1 3.7873 -5.7517 -2.1251 26 1 4.7260 -6.5692 -0.0004 27 1 3.5118 -5.4928 3.2938 28 1 4.4526 -6.7165 2.4074 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396107729.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:42 Heat of formation + Delta-G solvation = -0.219542 kcal Electronic energy + Delta-G solvation = -16710.320324 eV Core-core repulsion = 13755.043146 eV Total energy + Delta-G solvation = -2955.277178 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.58240 -39.23587 -36.15694 -35.73365 -34.07259 -32.56420 -31.81918 -28.27897 -26.92784 -25.48939 -23.57119 -21.58247 -20.64668 -18.52751 -18.06363 -17.10359 -16.50324 -15.71828 -15.02933 -14.71390 -14.64004 -14.28695 -13.68049 -13.11344 -12.86376 -12.25095 -12.02920 -11.57936 -11.45636 -10.93297 -10.84199 -10.73557 -10.62237 -10.53434 -10.34597 -10.33198 -9.90048 -9.73881 -9.13004 -8.55121 -8.52418 -6.17586 -4.24662 0.80306 1.23154 1.27941 2.06127 2.29696 3.30219 3.34316 3.39495 3.63366 4.18208 4.37404 4.42148 4.88046 4.98674 5.09105 5.19452 5.30335 5.37157 5.53683 5.90607 6.16946 6.22821 6.40832 6.69506 7.04687 7.18046 7.24495 7.75024 8.00997 8.30163 8.78352 9.42210 10.92474 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.022146 B = 0.007817 C = 0.007115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.026237 B = 3581.009367 C = 3934.615279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.067 3.933 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.523 4.523 8 H 0.061 0.939 9 C 0.035 3.965 10 C 0.011 3.989 11 C -0.104 4.104 12 C -0.088 4.088 13 C -0.118 4.118 14 C -0.069 4.069 15 C -0.006 4.006 16 Cl -0.156 7.156 17 C -0.012 4.012 18 N 0.029 4.971 19 O -0.105 6.105 20 O -0.177 6.177 21 H 0.266 0.734 22 H 0.045 0.955 23 H 0.034 0.966 24 H 0.143 0.857 25 H 0.135 0.865 26 H 0.137 0.863 27 H 0.098 0.902 28 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.737 -12.785 -0.392 14.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.561 4.561 8 H 0.079 0.921 9 C -0.002 4.002 10 C 0.010 3.990 11 C -0.123 4.123 12 C -0.106 4.106 13 C -0.137 4.137 14 C -0.071 4.071 15 C -0.068 4.068 16 Cl -0.129 7.129 17 C -0.092 4.092 18 N 0.560 4.440 19 O -0.339 6.339 20 O -0.390 6.390 21 H 0.076 0.924 22 H 0.063 0.937 23 H 0.052 0.948 24 H 0.161 0.839 25 H 0.153 0.847 26 H 0.155 0.845 27 H 0.116 0.884 28 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.816 -13.002 -1.008 15.203 hybrid contribution 0.334 1.116 0.300 1.203 sum 8.150 -11.886 -0.708 14.429 Atomic orbital electron populations 1.69936 1.06170 1.27498 1.48984 1.24965 0.94910 0.99536 0.94205 0.86484 0.79583 0.82032 0.79103 1.20066 1.21057 1.19449 1.20817 0.93018 0.88948 1.53281 0.92078 1.18637 0.92361 0.89271 0.99888 1.20590 0.94595 0.94517 0.89260 1.21222 0.97869 0.95455 0.97766 1.21376 0.95340 0.95810 0.98079 1.20777 1.01150 1.01134 0.90619 1.19244 0.96459 0.95391 0.95984 1.23191 0.88916 0.98888 0.95843 1.98756 1.39743 1.79121 1.95311 1.20601 1.04782 0.99203 0.84628 1.43340 0.99399 0.99697 1.01601 1.94566 1.52237 1.16773 1.70328 1.94491 1.18666 1.66998 1.58824 0.92406 0.93716 0.94806 0.83886 0.84677 0.84516 0.88390 0.86788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.13 13.29 55.43 0.74 -25.39 15 2 C 0.07 1.90 5.46 -17.82 -0.10 1.80 15 3 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 15 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 15 6 H -0.27 -6.56 7.11 56.52 0.40 -6.15 15 7 C -0.52 -14.51 9.09 -34.44 -0.31 -14.83 15 8 H 0.06 1.70 7.74 -52.48 -0.41 1.30 15 9 C 0.04 0.89 4.80 -29.03 -0.14 0.75 15 10 C 0.01 0.24 5.07 -104.62 -0.53 -0.29 15 11 C -0.10 -1.70 9.68 -39.58 -0.38 -2.09 15 12 C -0.09 -1.11 10.05 -39.58 -0.40 -1.51 15 13 C -0.12 -1.48 9.70 -39.58 -0.38 -1.86 15 14 C -0.07 -1.07 5.26 -104.63 -0.55 -1.62 15 15 C -0.01 -0.07 6.54 36.00 0.24 0.16 15 16 Cl -0.16 -2.27 29.13 -51.86 -1.51 -3.78 15 17 C -0.01 -0.23 6.09 -79.95 -0.49 -0.72 15 18 N 0.03 0.65 2.34 33.96 0.08 0.73 15 19 O -0.11 -2.50 19.25 -29.46 -0.57 -3.07 15 20 O -0.18 -3.96 19.04 -29.46 -0.56 -4.52 15 21 H 0.27 7.41 8.31 -40.82 -0.34 7.07 15 22 H 0.04 1.14 8.05 -51.93 -0.42 0.72 15 23 H 0.03 0.95 7.52 -51.93 -0.39 0.56 15 24 H 0.14 2.12 8.06 -52.49 -0.42 1.70 15 25 H 0.14 1.20 8.06 -52.49 -0.42 0.78 15 26 H 0.14 1.22 8.06 -52.49 -0.42 0.80 15 27 H 0.10 1.38 7.32 -51.93 -0.38 1.00 15 28 H 0.11 1.06 8.09 -51.93 -0.42 0.64 15 LS Contribution 276.85 15.07 4.17 4.17 Total: -1.00 -31.17 276.85 -8.14 -39.31 By element: Atomic # 1 Polarization: -1.59 SS G_CDS: -2.42 Total: -4.01 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -3.05 Total: -20.21 kcal Atomic # 7 Polarization: -25.48 SS G_CDS: 0.82 Total: -24.66 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -1.13 Total: -7.59 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 17 Polarization: -2.27 SS G_CDS: -1.51 Total: -3.78 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.17 -8.14 -39.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396107729.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.088 kcal (2) G-P(sol) polarization free energy of solvation -31.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds