Wall clock time and date at job start Mon Mar 30 2020 06:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00199 * 2 1 4 4 H 1.48505 * 109.47294 * 240.00051 * 3 2 1 5 5 H 1.48498 * 109.47148 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47272 * 120.00033 * 3 2 1 7 7 C 1.37874 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00512 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00016 * 359.97438 * 7 2 1 10 10 C 1.50700 * 109.47428 * 180.02562 * 9 7 2 11 11 C 1.38254 * 119.99868 * 264.86808 * 10 9 7 12 12 C 1.38215 * 120.00401 * 180.02562 * 11 10 9 13 13 C 1.38265 * 119.99330 * 0.07179 * 12 11 10 14 14 C 1.38207 * 120.00352 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00352 * 179.97438 * 14 13 12 16 16 Cl 1.80293 * 109.47419 * 89.99887 * 15 14 13 17 17 C 1.38214 * 120.00281 * 84.99928 * 10 9 7 18 18 N 1.48020 * 119.99455 * 359.97438 * 17 10 9 19 19 O 1.21797 * 120.00331 * 269.97514 * 18 17 10 20 20 O 1.21803 * 119.99979 * 89.97833 * 18 17 10 21 21 H 0.97000 * 119.99385 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46910 * 59.99991 * 9 7 2 23 23 H 1.09000 * 109.46909 * 299.99988 * 9 7 2 24 24 H 1.08001 * 120.00324 * 0.10893 * 11 10 9 25 25 H 1.07995 * 120.00479 * 180.34107 * 12 11 10 26 26 H 1.08000 * 119.99314 * 179.97438 * 13 12 11 27 27 H 1.09003 * 109.47255 * 210.00411 * 15 14 13 28 28 H 1.09001 * 109.46747 * 329.99800 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.5981 -4.2396 -1.1931 12 6 3.4958 -5.2906 -1.1931 13 6 4.0249 -5.7477 -0.0003 14 6 3.6565 -5.1536 1.1919 15 6 4.2327 -5.6522 2.4920 16 17 5.7509 -4.7524 2.8610 17 6 2.7587 -4.1022 1.1918 18 7 2.3631 -3.4666 2.4688 19 8 2.9995 -2.5229 2.9022 20 8 1.4011 -3.8874 3.0861 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8897 24 1 2.1850 -3.8824 -2.1248 25 1 3.7873 -5.7517 -2.1251 26 1 4.7260 -6.5692 -0.0004 27 1 3.5118 -5.4928 3.2938 28 1 4.4526 -6.7165 2.4074 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396107729.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:42 Heat of formation + Delta-G solvation = -17.615623 kcal Electronic energy + Delta-G solvation = -16711.074675 eV Core-core repulsion = 13755.043146 eV Total energy + Delta-G solvation = -2956.031529 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.22805 -40.56202 -37.48473 -37.26744 -35.84688 -34.04359 -33.36276 -30.00958 -28.27474 -26.99095 -25.45557 -22.97961 -22.11672 -20.00791 -19.79434 -18.68142 -18.62989 -17.04355 -16.41429 -16.38297 -15.82054 -15.55520 -14.80099 -14.66624 -14.55046 -13.72235 -13.60643 -13.24439 -13.00767 -12.72492 -12.66173 -12.56446 -12.22100 -12.18173 -11.80200 -11.73425 -11.65009 -11.54214 -10.72107 -10.37469 -9.92943 -8.33709 -6.48064 -0.51774 -0.43012 -0.00764 0.52818 1.22023 1.33912 1.39364 1.46457 2.30604 2.45624 2.98247 3.05242 3.33677 3.74853 3.92399 4.04196 4.09039 4.19662 4.32661 4.60202 4.84795 5.00118 5.04255 5.16366 5.24417 5.42271 5.56151 5.64908 5.91008 6.49720 6.61361 7.22654 8.76504 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.022146 B = 0.007817 C = 0.007115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.026237 B = 3581.009367 C = 3934.615279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.013 3.987 3 Si 0.963 3.037 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.533 4.533 8 H 0.054 0.946 9 C 0.046 3.954 10 C -0.030 4.030 11 C -0.110 4.110 12 C -0.062 4.062 13 C -0.092 4.092 14 C -0.073 4.073 15 C -0.003 4.003 16 Cl -0.170 7.170 17 C -0.038 4.038 18 N 0.033 4.967 19 O -0.151 6.151 20 O -0.182 6.182 21 H 0.269 0.731 22 H 0.030 0.970 23 H -0.010 1.010 24 H 0.152 0.848 25 H 0.190 0.810 26 H 0.192 0.808 27 H 0.081 0.919 28 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.167 -15.105 -2.069 18.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.187 4.187 3 Si 0.786 3.214 4 H -0.183 1.183 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.570 4.570 8 H 0.072 0.928 9 C 0.009 3.991 10 C -0.031 4.031 11 C -0.128 4.128 12 C -0.079 4.079 13 C -0.111 4.111 14 C -0.075 4.075 15 C -0.065 4.065 16 Cl -0.143 7.143 17 C -0.118 4.118 18 N 0.560 4.440 19 O -0.377 6.377 20 O -0.398 6.398 21 H 0.077 0.923 22 H 0.048 0.952 23 H 0.008 0.992 24 H 0.169 0.831 25 H 0.207 0.793 26 H 0.209 0.791 27 H 0.100 0.900 28 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 10.293 -15.286 -2.686 18.624 hybrid contribution -0.432 1.658 0.771 1.879 sum 9.861 -13.628 -1.915 16.930 Atomic orbital electron populations 1.70050 1.07666 1.28404 1.50207 1.25869 0.95744 1.03190 0.93854 0.85527 0.78506 0.77976 0.79365 1.18273 1.20139 1.19878 1.21097 0.92812 0.90549 1.52552 0.92787 1.18256 0.92831 0.91087 0.96923 1.20286 0.96068 0.95103 0.91605 1.21430 0.98763 0.96444 0.96186 1.21947 0.92258 0.93245 1.00469 1.21498 0.99876 1.00805 0.88874 1.19678 0.95299 0.94042 0.98481 1.23399 0.87884 1.01122 0.94144 1.98759 1.40333 1.79845 1.95366 1.20865 1.07304 1.01213 0.82408 1.43814 0.98659 0.99161 1.02408 1.94538 1.52992 1.18376 1.71776 1.94442 1.18854 1.66732 1.59813 0.92252 0.95223 0.99220 0.83058 0.79257 0.79065 0.90042 0.81781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.54 13.29 21.45 0.28 -56.25 15 2 C 0.01 0.76 5.46 84.65 0.46 1.22 15 3 Si 0.96 45.59 29.54 68.60 2.03 47.61 15 4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 15 5 H -0.28 -12.59 7.11 99.48 0.71 -11.89 15 6 H -0.27 -13.03 7.11 99.48 0.71 -12.32 15 7 C -0.53 -30.76 9.09 25.60 0.23 -30.53 15 8 H 0.05 3.11 7.74 -2.91 -0.02 3.09 15 9 C 0.05 2.46 4.80 29.10 0.14 2.60 15 10 C -0.03 -1.24 5.07 -19.87 -0.10 -1.34 15 11 C -0.11 -3.34 9.68 22.27 0.22 -3.12 15 12 C -0.06 -1.21 10.05 22.27 0.22 -0.99 15 13 C -0.09 -1.76 9.70 22.27 0.22 -1.55 15 14 C -0.07 -2.06 5.26 -19.87 -0.10 -2.17 15 15 C 0.00 -0.08 6.54 71.23 0.47 0.39 15 16 Cl -0.17 -4.62 29.13 -2.72 -0.08 -4.70 15 17 C -0.04 -1.50 6.09 36.37 0.22 -1.28 15 18 N 0.03 1.54 2.34 -46.46 -0.11 1.43 15 19 O -0.15 -7.57 19.25 18.89 0.36 -7.21 15 20 O -0.18 -8.55 19.04 18.88 0.36 -8.19 15 21 H 0.27 15.44 8.31 -92.71 -0.77 14.67 15 22 H 0.03 1.61 8.05 -2.38 -0.02 1.59 15 23 H -0.01 -0.63 7.52 -2.39 -0.02 -0.65 15 24 H 0.15 4.24 8.06 -2.91 -0.02 4.21 15 25 H 0.19 1.80 8.06 -2.91 -0.02 1.78 15 26 H 0.19 1.72 8.06 -2.91 -0.02 1.70 15 27 H 0.08 2.20 7.32 -2.39 -0.02 2.19 15 28 H 0.16 2.16 8.09 -2.39 -0.02 2.14 15 Total: -1.00 -74.31 276.85 6.00 -68.31 By element: Atomic # 1 Polarization: -5.43 SS G_CDS: 1.18 Total: -4.24 kcal Atomic # 6 Polarization: -38.73 SS G_CDS: 1.97 Total: -36.76 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.18 Total: -54.82 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: 0.72 Total: -15.40 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Atomic # 17 Polarization: -4.62 SS G_CDS: -0.08 Total: -4.70 kcal Total: -74.31 6.00 -68.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396107729.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.691 kcal (2) G-P(sol) polarization free energy of solvation -74.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds