Wall clock time and date at job start Mon Mar 30 2020 06:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43210 * 179.97438 * 2 1 4 4 C 1.39655 * 120.14476 * 157.94458 * 3 2 1 5 5 C 1.37925 * 119.84289 * 179.72470 * 4 3 2 6 6 C 1.38391 * 120.14838 * 0.50790 * 5 4 3 7 7 C 1.50700 * 119.84358 * 179.76877 * 6 5 4 8 8 C 1.50702 * 109.46869 * 269.71793 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48501 * 109.47188 * 90.00793 * 12 10 8 14 14 H 1.48501 * 109.47085 * 210.00372 * 12 10 8 15 15 H 1.48498 * 109.47634 * 330.00608 * 12 10 8 16 16 C 1.38336 * 120.30608 * 359.48640 * 6 5 4 17 17 C 1.37972 * 120.15273 * 0.25640 * 16 6 5 18 18 C 1.50696 * 120.07664 * 180.02562 * 17 16 6 19 19 F 1.39909 * 109.47160 * 0.02562 * 18 17 16 20 20 F 1.39903 * 109.46911 * 120.00116 * 18 17 16 21 21 F 1.39898 * 109.47430 * 240.00169 * 18 17 16 22 22 H 1.07998 * 120.07799 * 359.97013 * 4 3 2 23 23 H 1.07995 * 119.92748 * 180.24934 * 5 4 3 24 24 H 1.09004 * 109.47210 * 149.72086 * 7 6 5 25 25 H 1.08994 * 109.47551 * 29.71738 * 7 6 5 26 26 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 27 27 H 1.08000 * 119.91911 * 180.28163 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2689 1.1203 -0.4535 5 6 4.6481 1.1163 -0.4454 6 6 5.3374 0.0023 0.0008 7 6 6.8444 0.0035 0.0017 8 6 7.3479 -0.5303 -1.3146 9 1 6.6468 -0.8391 -2.0759 10 6 8.7037 -0.6186 -1.5494 11 7 9.5575 -0.2423 -0.6226 12 14 9.3278 -1.2730 -3.1839 13 1 9.4875 -0.1475 -4.1393 14 1 10.6388 -1.9405 -2.9818 15 1 8.3533 -2.2514 -3.7301 16 6 4.6494 -1.1100 0.4514 17 6 3.2698 -1.1177 0.4538 18 6 2.5221 -2.3301 0.9456 19 9 3.4360 -3.3113 1.3450 20 9 1.7175 -1.9725 2.0329 21 9 1.7187 -2.8320 -0.0839 22 1 2.7322 1.9886 -0.8059 23 1 5.1914 1.9829 -0.7920 24 1 7.2077 -0.6278 0.8127 25 1 7.2069 1.0216 0.1435 26 1 10.5113 -0.3047 -0.7877 27 1 5.1937 -1.9743 0.8025 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396114737.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:34 Heat of formation + Delta-G solvation = -108.964979 kcal Electronic energy + Delta-G solvation = -17989.165737 eV Core-core repulsion = 14489.749112 eV Total energy + Delta-G solvation = -3499.416625 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.09132 -47.59301 -47.56059 -39.49767 -36.49103 -33.84204 -32.06990 -31.56883 -27.86437 -26.11216 -24.10814 -22.21594 -21.26604 -19.23573 -18.42317 -18.32380 -17.22446 -16.50121 -15.38226 -14.89880 -14.57452 -14.52157 -14.25860 -14.08650 -14.01322 -13.85243 -13.70111 -13.67279 -12.83611 -12.81920 -12.71866 -12.50289 -12.02076 -11.56268 -11.49161 -11.06453 -10.76131 -10.66418 -9.90479 -9.71583 -9.10630 -8.59701 -8.37576 -6.22516 -4.28345 0.73880 1.28819 2.61883 2.70860 3.05137 3.21211 3.28938 3.32427 3.70465 3.80526 3.90200 4.08288 4.30953 4.49910 4.92843 5.13707 5.30420 5.45213 5.54983 5.71214 5.94955 6.21263 6.45425 6.62541 6.94112 7.27944 7.43035 7.44311 7.71849 8.04715 8.76365 9.37487 10.87152 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.027712 B = 0.005852 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.153326 B = 4783.500100 C = 5160.178603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C 0.251 3.749 3 C -0.020 4.020 4 C -0.067 4.067 5 C -0.096 4.096 6 C 0.000 4.000 7 C 0.042 3.958 8 C -0.522 4.522 9 H 0.061 0.939 10 C 0.063 3.937 11 N -0.889 5.889 12 Si 0.898 3.102 13 H -0.279 1.279 14 H -0.285 1.285 15 H -0.272 1.272 16 C -0.076 4.076 17 C -0.141 4.141 18 C 0.504 3.496 19 F -0.171 7.171 20 F -0.178 7.178 21 F -0.177 7.177 22 H 0.137 0.863 23 H 0.142 0.858 24 H 0.038 0.962 25 H 0.039 0.961 26 H 0.265 0.735 27 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.219 0.155 2.370 9.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.088 5.088 2 C -0.064 4.064 3 C -0.023 4.023 4 C -0.088 4.088 5 C -0.114 4.114 6 C -0.001 4.001 7 C 0.005 3.995 8 C -0.560 4.560 9 H 0.079 0.921 10 C -0.140 4.140 11 N -0.527 5.527 12 Si 0.725 3.275 13 H -0.205 1.205 14 H -0.211 1.211 15 H -0.197 1.197 16 C -0.094 4.094 17 C -0.145 4.145 18 C 0.450 3.550 19 F -0.152 7.152 20 F -0.159 7.159 21 F -0.158 7.158 22 H 0.154 0.846 23 H 0.160 0.840 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -10.821 0.128 2.430 11.091 hybrid contribution 0.743 -0.607 -0.821 1.262 sum -10.078 -0.479 1.609 10.217 Atomic orbital electron populations 1.81182 1.11829 1.07086 1.08673 1.25682 0.92699 0.94205 0.93841 1.15413 0.83978 0.95984 1.06939 1.21129 0.94513 0.95982 0.97174 1.21347 0.92688 0.99450 0.97946 1.21060 1.00048 0.90588 0.88434 1.18531 0.82933 0.99366 0.98630 1.20977 0.91656 1.43809 0.99527 0.92124 1.24992 0.96822 0.95090 0.97108 1.69938 1.02466 1.46897 1.33422 0.86494 0.78364 0.79206 0.83440 1.20472 1.21059 1.19650 1.21007 0.90464 0.99967 0.97963 1.19905 0.95162 0.92749 1.06687 1.18352 0.77433 0.83732 0.75452 1.93191 1.66409 1.64664 1.90949 1.93215 1.74801 1.91802 1.56097 1.93220 1.74799 1.88768 1.59015 0.84558 0.84035 0.94381 0.94272 0.92545 0.83564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -6.78 18.54 41.84 0.78 -6.00 15 2 C 0.25 3.79 13.19 -22.47 -0.30 3.50 15 3 C -0.02 -0.28 5.71 -106.93 -0.61 -0.89 15 4 C -0.07 -0.86 9.76 -39.17 -0.38 -1.24 15 5 C -0.10 -1.40 9.68 -39.64 -0.38 -1.79 15 6 C 0.00 -0.01 5.08 -104.53 -0.53 -0.54 15 7 C 0.04 0.91 5.10 -29.03 -0.15 0.77 15 8 C -0.52 -12.90 9.09 -34.44 -0.31 -13.21 15 9 H 0.06 1.48 7.74 -52.49 -0.41 1.08 15 10 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 11 N -0.89 -24.07 13.29 55.43 0.74 -23.33 15 12 Si 0.90 19.92 29.54 -169.99 -5.02 14.90 15 13 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 15 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 16 C -0.08 -1.23 9.07 -39.64 -0.36 -1.59 15 17 C -0.14 -2.14 5.40 -104.21 -0.56 -2.70 15 18 C 0.50 7.59 2.89 36.00 0.10 7.69 15 19 F -0.17 -2.53 15.98 2.25 0.04 -2.50 15 20 F -0.18 -2.69 16.52 2.25 0.04 -2.65 15 21 F -0.18 -2.76 16.53 2.25 0.04 -2.72 15 22 H 0.14 1.34 8.06 -52.49 -0.42 0.91 15 23 H 0.14 1.87 8.06 -52.49 -0.42 1.45 15 24 H 0.04 0.87 8.08 -51.93 -0.42 0.45 15 25 H 0.04 0.88 8.08 -51.93 -0.42 0.46 15 26 H 0.26 6.82 8.31 -40.82 -0.34 6.48 15 27 H 0.15 2.32 7.15 -52.49 -0.38 1.94 15 LS Contribution 267.61 15.07 4.03 4.03 Total: -1.00 -26.66 267.61 -4.55 -31.20 By element: Atomic # 1 Polarization: -2.85 SS G_CDS: -1.60 Total: -4.45 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -3.58 Total: -8.49 kcal Atomic # 7 Polarization: -30.84 SS G_CDS: 1.51 Total: -29.33 kcal Atomic # 9 Polarization: -7.98 SS G_CDS: 0.11 Total: -7.87 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -26.66 -4.55 -31.20 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396114737.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.761 kcal (2) G-P(sol) polarization free energy of solvation -26.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds