Wall clock time and date at job start Mon Mar 30 2020 06:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39652 * 120.15148 * 80.55569 * 3 2 1 5 5 C 1.37927 * 119.84339 * 180.02562 * 4 3 2 6 6 C 1.38379 * 120.15532 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.84669 * 179.97438 * 6 5 4 8 8 C 1.50695 * 109.47636 * 265.00023 * 7 6 5 9 9 H 1.08004 * 119.99416 * 0.02562 * 8 7 6 10 10 C 1.37872 * 120.00417 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00156 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 119.99924 * 0.02562 * 10 8 7 13 13 H 1.48503 * 109.47278 * 89.99801 * 12 10 8 14 14 H 1.48499 * 109.47132 * 209.99597 * 12 10 8 15 15 H 1.48495 * 109.46792 * 329.99892 * 12 10 8 16 16 C 1.38342 * 120.30330 * 359.97438 * 6 5 4 17 17 C 1.50700 * 119.92268 * 180.02562 * 16 6 5 18 18 F 1.39904 * 109.47200 * 180.02562 * 17 16 6 19 19 F 1.39900 * 109.47240 * 300.00541 * 17 16 6 20 20 F 1.39903 * 109.47165 * 60.00098 * 17 16 6 21 21 C 1.37971 * 120.15414 * 359.76671 * 16 6 5 22 22 H 1.07994 * 120.07286 * 0.02562 * 4 3 2 23 23 H 1.08001 * 119.91632 * 180.02562 * 5 4 3 24 24 H 1.08997 * 109.47088 * 25.00849 * 7 6 5 25 25 H 1.09007 * 109.46629 * 144.99802 * 7 6 5 26 26 H 0.97000 * 120.00118 * 180.02562 * 11 10 8 27 27 H 1.07990 * 120.07818 * 180.25521 * 21 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 -0.1972 -1.1912 5 6 4.6488 -0.1959 -1.1838 6 6 5.3374 0.0014 0.0002 7 6 6.8443 0.0009 0.0003 8 6 7.3463 -1.3749 0.3554 9 1 6.6442 -2.1697 0.5600 10 6 8.7017 -1.6194 0.4180 11 7 9.1397 -2.8200 0.7283 12 14 9.9160 -0.2450 0.0633 13 1 10.2383 0.4687 1.3251 14 1 11.1590 -0.8188 -0.5120 15 1 9.3162 0.7078 -0.9049 16 6 4.6487 0.1990 1.1836 17 6 5.4073 0.4136 2.4680 18 9 4.5023 0.5887 3.5204 19 9 6.2121 -0.7013 2.7261 20 9 6.2118 1.5520 2.3498 21 6 3.2690 0.2054 1.1899 22 1 2.7333 -0.3508 -2.1159 23 1 5.1925 -0.3484 -2.1044 24 1 7.2079 0.2761 -0.9897 25 1 7.2077 0.7208 0.7338 26 1 10.0933 -2.9919 0.7727 27 1 2.7327 0.3639 2.1137 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396119466.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:49 Heat of formation + Delta-G solvation = -115.553560 kcal Electronic energy + Delta-G solvation = -18514.735073 eV Core-core repulsion = 15015.032746 eV Total energy + Delta-G solvation = -3499.702327 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -51.02965 -48.59673 -48.37059 -40.70750 -37.70091 -35.41245 -33.63938 -32.89035 -30.06842 -26.95018 -25.59339 -23.28065 -22.64006 -20.48666 -19.35627 -19.25773 -18.94017 -17.67377 -16.86734 -16.57455 -16.05787 -15.47988 -15.34232 -15.08418 -14.97871 -14.90577 -14.74335 -14.60280 -14.53638 -14.06428 -14.04427 -13.74862 -13.47638 -13.37019 -13.01548 -12.51435 -12.09506 -11.95940 -11.82966 -11.50766 -10.70738 -10.24516 -9.73794 -8.21368 -6.24254 -0.30309 0.04730 1.41344 1.43455 1.51670 1.52892 1.81965 1.84162 2.40485 2.67840 2.72950 2.91313 3.14343 3.26557 3.59295 3.80090 3.96281 4.04283 4.36254 4.51526 4.77531 4.95104 5.05310 5.07768 5.18318 5.54487 5.60739 5.69545 6.28718 6.39642 6.80253 7.37190 8.94573 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.025208 B = 0.007803 C = 0.006725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.504905 B = 3587.457112 C = 4162.339043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.289 3.711 3 C -0.053 4.053 4 C -0.017 4.017 5 C -0.123 4.123 6 C 0.024 3.976 7 C -0.009 4.009 8 C -0.497 4.497 9 H 0.040 0.960 10 C 0.016 3.984 11 N -0.945 5.945 12 Si 0.928 3.072 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.235 1.235 16 C -0.201 4.201 17 C 0.505 3.495 18 F -0.180 7.180 19 F -0.171 7.171 20 F -0.182 7.182 21 C -0.018 4.018 22 H 0.175 0.825 23 H 0.161 0.839 24 H 0.055 0.945 25 H 0.035 0.965 26 H 0.265 0.735 27 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.763 8.889 -2.532 12.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.026 4.026 3 C -0.057 4.057 4 C -0.037 4.037 5 C -0.141 4.141 6 C 0.023 3.977 7 C -0.046 4.046 8 C -0.536 4.536 9 H 0.058 0.942 10 C -0.182 4.182 11 N -0.586 5.586 12 Si 0.752 3.248 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.157 1.157 16 C -0.203 4.203 17 C 0.451 3.549 18 F -0.162 7.162 19 F -0.152 7.152 20 F -0.163 7.163 21 C -0.038 4.038 22 H 0.192 0.808 23 H 0.179 0.821 24 H 0.074 0.926 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -10.361 8.800 -2.473 13.817 hybrid contribution 1.605 0.063 0.604 1.716 sum -8.756 8.863 -1.869 12.598 Atomic orbital electron populations 1.81269 1.12786 1.10706 1.08392 1.25420 0.92114 0.92315 0.92718 1.15682 0.83887 1.11041 0.95065 1.21649 0.93455 0.91063 0.97514 1.21247 0.93893 1.00835 0.98086 1.20250 0.97070 0.87988 0.92402 1.19119 0.88796 0.96962 0.99718 1.20856 0.91910 0.94541 1.46245 0.94216 1.25741 1.00291 0.97459 0.94665 1.70026 1.14926 1.23094 1.50536 0.85980 0.78806 0.80304 0.79669 1.20184 1.21237 1.15744 1.19680 0.94558 1.13656 0.92393 1.18367 0.77674 0.74188 0.84654 1.93121 1.67138 1.95333 1.60566 1.93360 1.74538 1.52614 1.94711 1.93130 1.75094 1.52094 1.96026 1.20977 0.91275 0.92807 0.98789 0.80771 0.82122 0.92638 0.94662 0.92636 0.82550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -12.36 18.54 19.00 0.35 -12.01 15 2 C 0.29 6.69 15.33 88.33 1.35 8.04 15 3 C -0.05 -1.17 5.73 -21.36 -0.12 -1.29 15 4 C -0.02 -0.33 9.76 22.54 0.22 -0.11 15 5 C -0.12 -3.09 9.66 22.23 0.21 -2.87 15 6 C 0.02 0.80 5.05 -19.81 -0.10 0.70 15 7 C -0.01 -0.37 3.52 29.10 0.10 -0.27 15 8 C -0.50 -25.82 7.72 25.60 0.20 -25.62 15 9 H 0.04 2.32 7.98 -2.91 -0.02 2.29 15 10 C 0.02 0.87 5.47 84.65 0.46 1.33 15 11 N -0.95 -56.65 13.96 21.45 0.30 -56.36 15 12 Si 0.93 41.30 27.47 68.60 1.88 43.19 15 13 H -0.28 -12.31 7.11 99.48 0.71 -11.60 15 14 H -0.29 -12.70 7.11 99.48 0.71 -11.99 15 15 H -0.23 -9.22 6.54 99.48 0.65 -8.57 15 16 C -0.20 -6.39 5.37 -19.90 -0.11 -6.50 15 17 C 0.51 17.86 2.83 71.24 0.20 18.06 15 18 F -0.18 -5.56 15.97 44.97 0.72 -4.84 15 19 F -0.17 -7.50 14.87 44.97 0.67 -6.83 15 20 F -0.18 -6.50 15.31 44.97 0.69 -5.81 15 21 C -0.02 -0.45 9.14 22.54 0.21 -0.24 15 22 H 0.17 2.11 8.06 -2.91 -0.02 2.09 15 23 H 0.16 3.46 8.06 -2.91 -0.02 3.44 15 24 H 0.06 2.11 7.10 -2.39 -0.02 2.10 15 25 H 0.04 1.48 5.15 -2.38 -0.01 1.47 15 26 H 0.26 14.96 8.31 -92.71 -0.77 14.19 15 27 H 0.16 3.34 7.15 -2.92 -0.02 3.32 15 Total: -1.00 -63.11 258.25 8.42 -54.70 By element: Atomic # 1 Polarization: -4.44 SS G_CDS: 1.17 Total: -3.26 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 2.63 Total: -8.77 kcal Atomic # 7 Polarization: -69.01 SS G_CDS: 0.65 Total: -68.36 kcal Atomic # 9 Polarization: -19.56 SS G_CDS: 2.08 Total: -17.49 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 1.88 Total: 43.19 kcal Total: -63.11 8.42 -54.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396119466.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.858 kcal (2) G-P(sol) polarization free energy of solvation -63.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds