Wall clock time and date at job start Mon Mar 30 2020 06:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39658 * 120.15122 * 82.25300 * 3 2 1 5 5 C 1.37924 * 119.84405 * 179.97438 * 4 3 2 6 6 C 1.38387 * 120.15530 * 359.97438 * 5 4 3 7 7 C 1.50693 * 119.84590 * 179.97438 * 6 5 4 8 8 F 1.39902 * 109.47472 * 359.97438 * 7 6 5 9 9 F 1.39906 * 109.47243 * 120.00102 * 7 6 5 10 10 F 1.39901 * 109.46961 * 239.99809 * 7 6 5 11 11 C 1.38343 * 120.30408 * 359.78853 * 6 5 4 12 12 C 1.37973 * 120.14994 * 0.46476 * 11 6 5 13 13 C 1.50698 * 120.07511 * 179.79442 * 12 11 6 14 14 C 1.50697 * 109.46993 * 99.72419 * 13 12 11 15 15 H 1.07991 * 120.00449 * 359.72131 * 14 13 12 16 16 C 1.37885 * 119.99686 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.72095 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.72528 * 16 14 13 19 19 H 1.48490 * 109.47339 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47239 * 120.00108 * 18 16 14 21 21 H 1.48504 * 109.46636 * 239.99667 * 18 16 14 22 22 H 1.07994 * 120.07469 * 0.02562 * 4 3 2 23 23 H 1.08002 * 119.92125 * 180.02562 * 5 4 3 24 24 H 1.07990 * 119.92398 * 180.23741 * 11 6 5 25 25 H 1.08998 * 109.47083 * 339.71834 * 13 12 11 26 26 H 1.09001 * 109.46875 * 219.72097 * 13 12 11 27 27 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 -0.1618 -1.1966 5 6 4.6487 -0.1597 -1.1894 6 6 5.3374 0.0035 -0.0002 7 6 6.8444 0.0041 -0.0002 8 9 7.3108 -0.1752 -1.3069 9 9 7.3102 1.2256 0.4982 10 9 7.3111 -1.0379 0.8082 11 6 4.6488 0.1698 1.1881 12 6 3.2691 0.1645 1.1962 13 6 2.5208 0.3412 2.4922 14 6 2.0565 1.7697 2.6134 15 1 2.2848 2.4798 1.8325 16 6 1.3448 2.1714 3.7239 17 7 1.0663 1.3065 4.6748 18 14 0.7759 3.9440 3.8778 19 1 1.2141 4.7099 2.6835 20 1 -0.7053 3.9819 3.9747 21 1 1.3675 4.5495 5.0980 22 1 2.7333 -0.2880 -2.1255 23 1 5.1925 -0.2848 -2.1141 24 1 5.1924 0.3005 2.1120 25 1 3.1787 0.1007 3.3273 26 1 1.6573 -0.3239 2.5067 27 1 0.5653 1.5890 5.4558 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396120154.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:38 Heat of formation + Delta-G solvation = -110.140110 kcal Electronic energy + Delta-G solvation = -17922.430338 eV Core-core repulsion = 14422.962755 eV Total energy + Delta-G solvation = -3499.467582 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.08353 -47.61911 -47.52019 -39.47530 -35.93851 -33.82690 -32.03238 -31.52472 -27.55506 -26.45349 -23.68338 -22.68951 -21.08723 -18.49620 -18.39465 -18.29683 -17.85428 -16.48820 -15.41135 -14.76321 -14.45124 -14.41103 -14.18082 -13.98958 -13.89269 -13.72101 -13.70240 -13.62875 -12.89137 -12.44421 -12.36457 -12.26657 -11.99728 -11.67522 -11.38264 -11.10801 -10.70169 -10.69546 -9.88630 -9.68982 -8.96508 -8.57175 -8.39141 -6.19099 -4.24672 0.73167 1.50447 2.73527 3.13999 3.23080 3.25215 3.31633 3.35530 3.78432 4.09791 4.11902 4.33188 4.36783 4.53489 4.95836 5.04862 5.17940 5.37802 5.58298 5.76708 6.10250 6.18415 6.35623 6.51136 6.89156 7.27293 7.38994 7.74644 8.02987 8.06796 8.79101 9.41173 10.90947 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.022485 B = 0.006562 C = 0.005644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.964181 B = 4265.928449 C = 4959.660367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C 0.267 3.733 3 C -0.003 4.003 4 C -0.076 4.076 5 C -0.103 4.103 6 C -0.161 4.161 7 C 0.509 3.491 8 F -0.181 7.181 9 F -0.175 7.175 10 F -0.177 7.177 11 C -0.075 4.075 12 C 0.012 3.988 13 C 0.041 3.959 14 C -0.520 4.520 15 H 0.060 0.940 16 C 0.064 3.936 17 N -0.887 5.887 18 Si 0.896 3.104 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.281 1.281 22 H 0.137 0.863 23 H 0.139 0.861 24 H 0.141 0.859 25 H 0.041 0.959 26 H 0.037 0.963 27 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.936 -3.604 -10.316 15.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.089 5.089 2 C -0.049 4.049 3 C -0.006 4.006 4 C -0.096 4.096 5 C -0.122 4.122 6 C -0.164 4.164 7 C 0.454 3.546 8 F -0.162 7.162 9 F -0.157 7.157 10 F -0.158 7.158 11 C -0.093 4.093 12 C 0.009 3.991 13 C 0.004 3.996 14 C -0.558 4.558 15 H 0.078 0.922 16 C -0.138 4.138 17 N -0.525 5.525 18 Si 0.723 3.277 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.207 1.207 22 H 0.155 0.845 23 H 0.157 0.843 24 H 0.158 0.842 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.121 -3.622 -10.140 14.112 hybrid contribution 0.390 1.021 0.275 1.127 sum 9.511 -2.600 -9.866 13.948 Atomic orbital electron populations 1.81117 1.12091 1.07979 1.07713 1.25273 0.92398 0.93922 0.93289 1.16163 0.85158 1.04844 0.94446 1.21033 0.93415 0.98334 0.96860 1.20655 0.93949 1.00673 0.96882 1.20125 0.90287 1.09054 0.96889 1.18354 0.89034 0.73844 0.73320 1.93143 1.90426 1.95159 1.37478 1.93230 1.90391 1.44520 1.87520 1.93215 1.90400 1.58652 1.73574 1.20808 0.93944 0.97701 0.96852 1.20841 0.92763 0.88703 0.96792 1.18542 0.95308 0.98426 0.87311 1.20951 1.35688 0.93688 1.05443 0.92154 1.24972 0.95501 0.97853 0.95523 1.69945 1.39226 1.34314 1.09049 0.86459 0.78579 0.84389 0.78268 1.19506 1.20826 1.20677 0.84543 0.84304 0.84156 0.94095 0.94488 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -8.83 18.54 41.84 0.78 -8.06 15 2 C 0.27 5.18 13.80 -22.47 -0.31 4.87 15 3 C 0.00 -0.05 5.73 -106.93 -0.61 -0.66 15 4 C -0.08 -0.98 9.76 -39.17 -0.38 -1.36 15 5 C -0.10 -1.25 9.41 -39.64 -0.37 -1.62 15 6 C -0.16 -2.22 5.38 -104.53 -0.56 -2.78 15 7 C 0.51 6.53 3.31 36.00 0.12 6.65 15 8 F -0.18 -2.14 15.96 2.25 0.04 -2.10 15 9 F -0.18 -2.41 17.23 2.25 0.04 -2.37 15 10 F -0.18 -2.33 17.24 2.25 0.04 -2.29 15 11 C -0.07 -1.20 9.20 -39.64 -0.36 -1.57 15 12 C 0.01 0.22 5.11 -104.21 -0.53 -0.31 15 13 C 0.04 0.96 4.60 -29.04 -0.13 0.82 15 14 C -0.52 -13.67 8.86 -34.44 -0.31 -13.98 15 15 H 0.06 1.58 7.74 -52.49 -0.41 1.17 15 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 15 17 N -0.89 -25.38 13.29 55.43 0.74 -24.65 15 18 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 15 19 H -0.27 -6.30 7.11 56.52 0.40 -5.89 15 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 22 H 0.14 1.36 8.06 -52.49 -0.42 0.94 15 23 H 0.14 1.29 7.14 -52.49 -0.37 0.92 15 24 H 0.14 2.16 8.04 -52.49 -0.42 1.74 15 25 H 0.04 0.98 8.01 -51.93 -0.42 0.57 15 26 H 0.04 0.95 7.48 -51.93 -0.39 0.56 15 27 H 0.26 7.16 8.31 -40.82 -0.34 6.82 15 LS Contribution 268.49 15.07 4.05 4.05 Total: -1.00 -28.67 268.49 -4.47 -33.13 By element: Atomic # 1 Polarization: -4.06 SS G_CDS: -1.56 Total: -5.62 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -3.55 Total: -8.27 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 1.51 Total: -32.71 kcal Atomic # 9 Polarization: -6.87 SS G_CDS: 0.11 Total: -6.76 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.67 -4.47 -33.13 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396120154.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.006 kcal (2) G-P(sol) polarization free energy of solvation -28.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds