Wall clock time and date at job start Mon Mar 30 2020 06:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39658 * 120.15122 * 82.25300 * 3 2 1 5 5 C 1.37924 * 119.84405 * 179.97438 * 4 3 2 6 6 C 1.38387 * 120.15530 * 359.97438 * 5 4 3 7 7 C 1.50693 * 119.84590 * 179.97438 * 6 5 4 8 8 F 1.39902 * 109.47472 * 359.97438 * 7 6 5 9 9 F 1.39906 * 109.47243 * 120.00102 * 7 6 5 10 10 F 1.39901 * 109.46961 * 239.99809 * 7 6 5 11 11 C 1.38343 * 120.30408 * 359.78853 * 6 5 4 12 12 C 1.37973 * 120.14994 * 0.46476 * 11 6 5 13 13 C 1.50698 * 120.07511 * 179.79442 * 12 11 6 14 14 C 1.50697 * 109.46993 * 99.72419 * 13 12 11 15 15 H 1.07991 * 120.00449 * 359.72131 * 14 13 12 16 16 C 1.37885 * 119.99686 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.72095 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.72528 * 16 14 13 19 19 H 1.48490 * 109.47339 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47239 * 120.00108 * 18 16 14 21 21 H 1.48504 * 109.46636 * 239.99667 * 18 16 14 22 22 H 1.07994 * 120.07469 * 0.02562 * 4 3 2 23 23 H 1.08002 * 119.92125 * 180.02562 * 5 4 3 24 24 H 1.07990 * 119.92398 * 180.23741 * 11 6 5 25 25 H 1.08998 * 109.47083 * 339.71834 * 13 12 11 26 26 H 1.09001 * 109.46875 * 219.72097 * 13 12 11 27 27 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 -0.1618 -1.1966 5 6 4.6487 -0.1597 -1.1894 6 6 5.3374 0.0035 -0.0002 7 6 6.8444 0.0041 -0.0002 8 9 7.3108 -0.1752 -1.3069 9 9 7.3102 1.2256 0.4982 10 9 7.3111 -1.0379 0.8082 11 6 4.6488 0.1698 1.1881 12 6 3.2691 0.1645 1.1962 13 6 2.5208 0.3412 2.4922 14 6 2.0565 1.7697 2.6134 15 1 2.2848 2.4798 1.8325 16 6 1.3448 2.1714 3.7239 17 7 1.0663 1.3065 4.6748 18 14 0.7759 3.9440 3.8778 19 1 1.2141 4.7099 2.6835 20 1 -0.7053 3.9819 3.9747 21 1 1.3675 4.5495 5.0980 22 1 2.7333 -0.2880 -2.1255 23 1 5.1925 -0.2848 -2.1141 24 1 5.1924 0.3005 2.1120 25 1 3.1787 0.1007 3.3273 26 1 1.6573 -0.3239 2.5067 27 1 0.5653 1.5890 5.4558 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396120154.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:38 Heat of formation + Delta-G solvation = -125.145672 kcal Electronic energy + Delta-G solvation = -17923.081028 eV Core-core repulsion = 14422.962755 eV Total energy + Delta-G solvation = -3500.118272 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -51.10469 -48.61049 -48.56816 -40.74379 -37.46184 -35.63887 -33.57900 -32.87447 -29.28347 -27.61450 -25.48828 -23.82489 -22.50839 -19.78531 -19.42161 -19.32402 -19.03311 -18.52479 -16.68468 -16.62417 -15.60992 -15.49369 -15.34150 -15.15104 -15.05271 -14.99761 -14.78380 -14.71962 -14.43608 -14.17417 -13.84131 -13.67042 -13.44612 -13.38786 -12.98779 -12.74517 -12.45056 -12.25194 -11.62366 -11.61563 -10.66236 -10.17488 -9.77422 -8.26980 -6.38408 -0.51348 0.32264 1.34939 1.37094 1.48136 1.67326 1.72339 1.80702 2.34934 2.69681 2.77332 2.99313 3.06489 3.08795 3.47454 3.83808 3.91905 4.16217 4.38497 4.57588 4.87153 5.00668 5.07282 5.19398 5.27244 5.58659 5.67572 5.70321 6.05281 6.53329 6.73779 7.30788 8.83195 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.022485 B = 0.006562 C = 0.005644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.964181 B = 4265.928449 C = 4959.660367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.280 3.720 3 C -0.018 4.018 4 C -0.053 4.053 5 C -0.079 4.079 6 C -0.155 4.155 7 C 0.516 3.484 8 F -0.168 7.168 9 F -0.181 7.181 10 F -0.179 7.179 11 C -0.080 4.080 12 C -0.014 4.014 13 C 0.049 3.951 14 C -0.525 4.525 15 H 0.059 0.941 16 C 0.010 3.990 17 N -0.925 5.925 18 Si 0.954 3.046 19 H -0.262 1.262 20 H -0.285 1.285 21 H -0.272 1.272 22 H 0.177 0.823 23 H 0.182 0.818 24 H 0.138 0.862 25 H 0.023 0.977 26 H 0.004 0.996 27 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.602 -3.170 -12.824 18.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.034 4.034 3 C -0.022 4.022 4 C -0.073 4.073 5 C -0.097 4.097 6 C -0.157 4.157 7 C 0.462 3.538 8 F -0.150 7.150 9 F -0.162 7.162 10 F -0.160 7.160 11 C -0.098 4.098 12 C -0.017 4.017 13 C 0.012 3.988 14 C -0.563 4.563 15 H 0.078 0.922 16 C -0.189 4.189 17 N -0.565 5.565 18 Si 0.779 3.221 19 H -0.186 1.186 20 H -0.211 1.211 21 H -0.197 1.197 22 H 0.194 0.806 23 H 0.199 0.801 24 H 0.155 0.845 25 H 0.041 0.959 26 H 0.023 0.977 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.804 -3.186 -12.660 16.945 hybrid contribution -0.019 0.824 0.968 1.271 sum 10.785 -2.362 -11.691 16.080 Atomic orbital electron populations 1.81109 1.13459 1.09850 1.09143 1.25784 0.93017 0.92620 0.92025 1.16314 0.83848 1.06475 0.95544 1.21418 0.93761 0.95613 0.96470 1.21153 0.93581 0.97353 0.97613 1.20243 0.90969 1.07903 0.96611 1.18130 0.88336 0.73603 0.73710 1.93171 1.90217 1.95069 1.36515 1.93229 1.90376 1.44906 1.87677 1.93221 1.90343 1.58706 1.73748 1.20681 0.92821 0.98228 0.98087 1.20323 0.93674 0.92474 0.95217 1.18214 0.94292 0.96426 0.89855 1.21309 1.34878 0.95130 1.04969 0.92231 1.25810 0.95946 1.01673 0.95498 1.70058 1.40479 1.36204 1.09745 0.85548 0.77765 0.80052 0.78739 1.18567 1.21133 1.19722 0.80608 0.80124 0.84453 0.95888 0.97739 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -19.95 18.54 19.00 0.35 -19.59 15 2 C 0.28 10.88 13.80 88.33 1.22 12.10 15 3 C -0.02 -0.60 5.73 -21.36 -0.12 -0.73 15 4 C -0.05 -1.14 9.76 22.54 0.22 -0.92 15 5 C -0.08 -1.51 9.41 22.23 0.21 -1.30 15 6 C -0.16 -3.76 5.38 -19.81 -0.11 -3.86 15 7 C 0.52 11.57 3.31 71.23 0.24 11.81 15 8 F -0.17 -3.22 15.96 44.97 0.72 -2.51 15 9 F -0.18 -4.50 17.23 44.97 0.77 -3.72 15 10 F -0.18 -4.26 17.24 44.97 0.78 -3.48 15 11 C -0.08 -2.49 9.20 22.23 0.20 -2.28 15 12 C -0.01 -0.53 5.11 -19.59 -0.10 -0.63 15 13 C 0.05 2.40 4.60 29.10 0.13 2.54 15 14 C -0.52 -28.30 8.86 25.60 0.23 -28.07 15 15 H 0.06 3.14 7.74 -2.92 -0.02 3.12 15 16 C 0.01 0.54 5.46 84.66 0.46 1.01 15 17 N -0.93 -54.75 13.29 21.45 0.28 -54.47 15 18 Si 0.95 43.97 29.54 68.60 2.03 46.00 15 19 H -0.26 -11.56 7.11 99.48 0.71 -10.85 15 20 H -0.29 -13.19 7.11 99.48 0.71 -12.48 15 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 15 22 H 0.18 2.49 8.06 -2.91 -0.02 2.46 15 23 H 0.18 2.08 7.14 -2.91 -0.02 2.06 15 24 H 0.14 4.25 8.04 -2.92 -0.02 4.22 15 25 H 0.02 1.17 8.01 -2.39 -0.02 1.15 15 26 H 0.00 0.24 7.48 -2.39 -0.02 0.22 15 27 H 0.26 14.82 8.31 -92.71 -0.77 14.05 15 Total: -1.00 -64.23 268.49 8.74 -55.50 By element: Atomic # 1 Polarization: -8.61 SS G_CDS: 1.22 Total: -7.38 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 2.58 Total: -10.34 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: 0.64 Total: -74.06 kcal Atomic # 9 Polarization: -11.98 SS G_CDS: 2.27 Total: -9.71 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -64.23 8.74 -55.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396120154.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.648 kcal (2) G-P(sol) polarization free energy of solvation -64.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds