Wall clock time and date at job start Mon Mar 30 2020 06:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13610 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39643 * 120.15129 * 39.07330 * 3 2 1 5 5 C 1.50700 * 120.07881 * 359.97438 * 4 3 2 6 6 C 1.50702 * 109.46869 * 85.00022 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48501 * 109.47188 * 90.00793 * 10 8 6 12 12 H 1.48501 * 109.47085 * 210.00372 * 10 8 6 13 13 H 1.48498 * 109.47634 * 330.00608 * 10 8 6 14 14 C 1.37927 * 119.84566 * 180.25245 * 4 3 2 15 15 C 1.38379 * 120.15092 * 359.44889 * 14 4 3 16 16 C 1.38344 * 120.30720 * 0.55094 * 15 14 4 17 17 C 1.37966 * 120.14497 * 359.73033 * 16 15 14 18 18 C 1.50706 * 120.07621 * 180.02562 * 17 16 15 19 19 F 1.39900 * 109.46787 * 359.97124 * 18 17 16 20 20 F 1.39891 * 109.47362 * 119.97121 * 18 17 16 21 21 F 1.39904 * 109.46775 * 239.97722 * 18 17 16 22 22 H 1.09004 * 109.47210 * 325.00315 * 5 4 3 23 23 H 1.08994 * 109.47551 * 204.99968 * 5 4 3 24 24 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 25 25 H 1.08002 * 119.92250 * 179.72623 * 14 4 3 26 26 H 1.08004 * 119.84571 * 180.25731 * 15 14 4 27 27 H 1.07998 * 119.92469 * 179.70302 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2699 -0.9365 -0.7611 5 6 2.5221 -1.9527 -1.5852 6 6 2.1644 -1.3518 -2.9201 7 1 2.4504 -0.3358 -3.1491 8 6 1.4775 -2.1012 -3.8517 9 7 1.1296 -3.3385 -3.5730 10 14 1.0409 -1.3589 -5.5092 11 1 2.1388 -1.6218 -6.4740 12 1 -0.2156 -1.9716 -6.0105 13 1 0.8523 0.1066 -5.3612 14 6 4.6491 -0.9335 -0.7524 15 6 5.3374 0.0025 -0.0007 16 6 4.6485 0.9339 0.7556 17 6 3.2689 0.9385 0.7606 18 6 2.5200 1.9541 1.5846 19 9 3.4329 2.7775 2.2522 20 9 1.7157 2.7333 0.7462 21 9 1.7163 1.2941 2.5204 22 1 1.6113 -2.2451 -1.0626 23 1 3.1506 -2.8299 -1.7383 24 1 0.6461 -3.8656 -4.2282 25 1 5.1932 -1.6605 -1.3371 26 1 6.4174 0.0030 -0.0007 27 1 5.1919 1.6585 1.3437 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396120643.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:43 Heat of formation + Delta-G solvation = -106.800135 kcal Electronic energy + Delta-G solvation = -18286.848514 eV Core-core repulsion = 14787.525764 eV Total energy + Delta-G solvation = -3499.322750 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.07275 -47.61188 -47.49901 -39.48584 -35.87100 -33.87133 -32.02788 -31.52945 -27.66997 -26.06842 -23.96316 -22.77976 -20.94047 -18.78086 -18.37933 -18.16825 -17.47725 -16.49221 -15.35696 -15.02090 -14.68275 -14.48306 -14.28271 -13.98373 -13.74301 -13.68410 -13.58560 -13.47856 -12.66284 -12.47338 -12.39932 -12.26951 -11.97164 -11.68855 -11.34993 -11.09462 -10.72660 -10.65280 -9.88388 -9.71271 -8.97135 -8.55932 -8.38015 -6.18651 -4.24381 0.81042 1.37248 2.72243 3.20968 3.23912 3.29339 3.31715 3.36252 3.76453 4.01726 4.09986 4.28099 4.34733 4.55603 4.99057 5.16480 5.22664 5.40672 5.54645 5.66819 6.04262 6.26463 6.45047 6.54396 6.93427 7.27847 7.39342 7.74906 8.01059 8.06959 8.79247 9.41337 10.91355 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.026591 B = 0.006909 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.735725 B = 4051.852831 C = 4477.178101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C 0.253 3.747 3 C 0.014 3.986 4 C 0.012 3.988 5 C 0.041 3.959 6 C -0.521 4.521 7 H 0.060 0.940 8 C 0.064 3.936 9 N -0.888 5.888 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.284 1.284 13 H -0.272 1.272 14 C -0.093 4.093 15 C -0.096 4.096 16 C -0.100 4.100 17 C -0.147 4.147 18 C 0.505 3.495 19 F -0.178 7.178 20 F -0.174 7.174 21 F -0.175 7.175 22 H 0.035 0.965 23 H 0.043 0.957 24 H 0.265 0.735 25 H 0.141 0.859 26 H 0.135 0.865 27 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.476 7.540 8.968 15.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.073 5.073 2 C -0.062 4.062 3 C 0.010 3.990 4 C 0.009 3.991 5 C 0.004 3.996 6 C -0.559 4.559 7 H 0.078 0.922 8 C -0.139 4.139 9 N -0.526 5.526 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.210 1.210 13 H -0.197 1.197 14 C -0.111 4.111 15 C -0.115 4.115 16 C -0.118 4.118 17 C -0.151 4.151 18 C 0.451 3.549 19 F -0.159 7.159 20 F -0.155 7.155 21 F -0.156 7.156 22 H 0.053 0.947 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.158 0.842 26 H 0.153 0.847 27 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.577 7.412 8.922 13.854 hybrid contribution 0.007 0.503 -0.868 1.003 sum 7.584 7.915 8.054 13.602 Atomic orbital electron populations 1.81096 1.11855 1.06785 1.07515 1.25248 0.92473 0.94466 0.94051 1.15577 0.85000 0.98006 1.00378 1.20908 0.93884 0.93854 0.90412 1.18543 0.95372 0.91999 0.93659 1.20919 1.37331 0.99482 0.98146 0.92180 1.24973 0.95243 0.94803 0.98832 1.69938 1.38771 1.08401 1.35458 0.86505 0.78065 0.79582 0.83483 1.20312 1.21004 1.19664 1.21349 0.93430 0.98612 0.97721 1.21308 1.00316 0.94215 0.95654 1.20725 0.91234 0.99844 1.00036 1.19880 0.95095 0.97959 1.02158 1.18339 0.77540 0.80655 0.78355 1.93144 1.66716 1.74242 1.81787 1.93240 1.74662 1.76385 1.71191 1.93229 1.74774 1.80657 1.66989 0.94707 0.93910 0.92549 0.84159 0.84731 0.84331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -9.13 18.54 41.84 0.78 -8.35 15 2 C 0.25 5.41 11.75 -22.47 -0.26 5.15 15 3 C 0.01 0.26 5.71 -106.93 -0.61 -0.35 15 4 C 0.01 0.23 5.10 -104.21 -0.53 -0.30 15 5 C 0.04 0.97 4.62 -29.03 -0.13 0.83 15 6 C -0.52 -13.77 9.09 -34.44 -0.31 -14.08 15 7 H 0.06 1.57 7.74 -52.49 -0.41 1.17 15 8 C 0.06 1.76 5.46 -17.82 -0.10 1.67 15 9 N -0.89 -25.43 13.29 55.43 0.74 -24.69 15 10 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 15 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 13 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 14 C -0.09 -1.37 9.67 -39.64 -0.38 -1.76 15 15 C -0.10 -1.12 10.04 -39.49 -0.40 -1.52 15 16 C -0.10 -1.23 9.42 -39.64 -0.37 -1.60 15 17 C -0.15 -2.27 5.40 -104.21 -0.56 -2.83 15 18 C 0.51 7.68 2.89 36.01 0.10 7.78 15 19 F -0.18 -2.32 15.98 2.25 0.04 -2.28 15 20 F -0.17 -2.90 16.53 2.25 0.04 -2.86 15 21 F -0.18 -2.82 16.53 2.25 0.04 -2.78 15 22 H 0.03 0.91 7.28 -51.93 -0.38 0.53 15 23 H 0.04 1.02 8.05 -51.93 -0.42 0.60 15 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15 25 H 0.14 1.86 8.06 -52.49 -0.42 1.44 15 26 H 0.13 1.07 8.06 -52.48 -0.42 0.65 15 27 H 0.14 1.31 7.15 -52.49 -0.38 0.94 15 LS Contribution 265.51 15.07 4.00 4.00 Total: -1.00 -29.41 265.51 -4.52 -33.93 By element: Atomic # 1 Polarization: -4.55 SS G_CDS: -1.56 Total: -6.11 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -3.56 Total: -7.02 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 1.51 Total: -33.05 kcal Atomic # 9 Polarization: -8.04 SS G_CDS: 0.11 Total: -7.93 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.41 -4.52 -33.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396120643.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.868 kcal (2) G-P(sol) polarization free energy of solvation -29.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds