Wall clock time and date at job start Mon Mar 30 2020 06:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13610 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39643 * 120.15129 * 39.07330 * 3 2 1 5 5 C 1.50700 * 120.07881 * 359.97438 * 4 3 2 6 6 C 1.50702 * 109.46869 * 85.00022 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48501 * 109.47188 * 90.00793 * 10 8 6 12 12 H 1.48501 * 109.47085 * 210.00372 * 10 8 6 13 13 H 1.48498 * 109.47634 * 330.00608 * 10 8 6 14 14 C 1.37927 * 119.84566 * 180.25245 * 4 3 2 15 15 C 1.38379 * 120.15092 * 359.44889 * 14 4 3 16 16 C 1.38344 * 120.30720 * 0.55094 * 15 14 4 17 17 C 1.37966 * 120.14497 * 359.73033 * 16 15 14 18 18 C 1.50706 * 120.07621 * 180.02562 * 17 16 15 19 19 F 1.39900 * 109.46787 * 359.97124 * 18 17 16 20 20 F 1.39891 * 109.47362 * 119.97121 * 18 17 16 21 21 F 1.39904 * 109.46775 * 239.97722 * 18 17 16 22 22 H 1.09004 * 109.47210 * 325.00315 * 5 4 3 23 23 H 1.08994 * 109.47551 * 204.99968 * 5 4 3 24 24 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 25 25 H 1.08002 * 119.92250 * 179.72623 * 14 4 3 26 26 H 1.08004 * 119.84571 * 180.25731 * 15 14 4 27 27 H 1.07998 * 119.92469 * 179.70302 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2699 -0.9365 -0.7611 5 6 2.5221 -1.9527 -1.5852 6 6 2.1644 -1.3518 -2.9201 7 1 2.4504 -0.3358 -3.1491 8 6 1.4775 -2.1012 -3.8517 9 7 1.1296 -3.3385 -3.5730 10 14 1.0409 -1.3589 -5.5092 11 1 2.1388 -1.6218 -6.4740 12 1 -0.2156 -1.9716 -6.0105 13 1 0.8523 0.1066 -5.3612 14 6 4.6491 -0.9335 -0.7524 15 6 5.3374 0.0025 -0.0007 16 6 4.6485 0.9339 0.7556 17 6 3.2689 0.9385 0.7606 18 6 2.5200 1.9541 1.5846 19 9 3.4329 2.7775 2.2522 20 9 1.7157 2.7333 0.7462 21 9 1.7163 1.2941 2.5204 22 1 1.6113 -2.2451 -1.0626 23 1 3.1506 -2.8299 -1.7383 24 1 0.6461 -3.8656 -4.2282 25 1 5.1932 -1.6605 -1.3371 26 1 6.4174 0.0030 -0.0007 27 1 5.1919 1.6585 1.3437 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396120643.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:43 Heat of formation + Delta-G solvation = -123.168778 kcal Electronic energy + Delta-G solvation = -18287.558312 eV Core-core repulsion = 14787.525764 eV Total energy + Delta-G solvation = -3500.032548 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -51.27022 -48.76104 -48.75490 -40.75466 -37.49222 -35.66557 -33.59937 -32.85682 -29.40964 -27.28485 -25.65885 -24.16478 -22.31324 -20.08910 -19.59720 -19.37937 -18.71377 -18.55187 -16.70761 -16.59853 -16.07250 -15.75566 -15.48411 -15.21137 -15.11067 -14.99783 -14.88744 -14.82847 -14.39293 -14.15588 -13.87664 -13.68622 -13.46102 -13.36457 -12.98500 -12.70386 -12.44109 -12.22544 -11.65831 -11.60367 -10.64337 -10.15635 -9.76401 -8.26500 -6.38162 -0.43947 0.17593 1.35827 1.38388 1.47708 1.51732 1.59482 1.91307 2.34873 2.55236 2.67241 2.85941 2.94883 3.07576 3.31867 3.86131 4.10763 4.31393 4.33287 4.49807 4.83878 5.03907 5.18327 5.27746 5.35117 5.66279 5.69345 5.78375 6.06389 6.39771 6.73915 7.31046 8.83433 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.026591 B = 0.006909 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.735725 B = 4051.852831 C = 4477.178101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.263 3.737 3 C -0.016 4.016 4 C -0.014 4.014 5 C 0.049 3.951 6 C -0.528 4.528 7 H 0.059 0.941 8 C 0.010 3.990 9 N -0.925 5.925 10 Si 0.955 3.045 11 H -0.260 1.260 12 H -0.287 1.287 13 H -0.272 1.272 14 C -0.091 4.091 15 C -0.064 4.064 16 C -0.078 4.078 17 C -0.149 4.149 18 C 0.506 3.494 19 F -0.160 7.160 20 F -0.186 7.186 21 F -0.184 7.184 22 H -0.005 1.005 23 H 0.033 0.967 24 H 0.265 0.735 25 H 0.155 0.845 26 H 0.191 0.809 27 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.811 9.158 9.294 18.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.052 4.052 3 C -0.019 4.019 4 C -0.016 4.016 5 C 0.012 3.988 6 C -0.565 4.565 7 H 0.077 0.923 8 C -0.189 4.189 9 N -0.565 5.565 10 Si 0.780 3.220 11 H -0.184 1.184 12 H -0.212 1.212 13 H -0.197 1.197 14 C -0.109 4.109 15 C -0.082 4.082 16 C -0.095 4.095 17 C -0.153 4.153 18 C 0.452 3.548 19 F -0.141 7.141 20 F -0.168 7.168 21 F -0.166 7.166 22 H 0.013 0.987 23 H 0.051 0.949 24 H 0.074 0.926 25 H 0.173 0.827 26 H 0.208 0.792 27 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 10.927 9.040 9.254 16.934 hybrid contribution -0.895 0.044 -0.871 1.249 sum 10.033 9.084 8.383 15.920 Atomic orbital electron populations 1.81058 1.13327 1.08644 1.09462 1.25979 0.93438 0.93073 0.92698 1.15687 0.83452 1.00044 1.02759 1.20506 0.95597 0.93797 0.91727 1.18231 0.94215 0.93173 0.93195 1.21290 1.36542 0.99302 0.99413 0.92302 1.25811 0.95448 0.95202 1.02425 1.70054 1.40024 1.09750 1.36657 0.85590 0.78088 0.78529 0.79828 1.18430 1.21243 1.19655 1.21565 0.91436 0.99741 0.98135 1.21856 1.02725 0.91290 0.92306 1.21315 0.89633 0.99774 0.98816 1.19981 0.96422 0.97185 1.01733 1.18345 0.77502 0.80720 0.78216 1.93175 1.65849 1.73686 1.81367 1.93217 1.75182 1.76708 1.71653 1.93215 1.75179 1.80890 1.67268 0.98681 0.94890 0.92591 0.82692 0.79216 0.80199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -21.77 18.54 19.00 0.35 -21.41 15 2 C 0.26 11.68 11.75 88.33 1.04 12.71 15 3 C -0.02 -0.59 5.71 -21.36 -0.12 -0.71 15 4 C -0.01 -0.51 5.10 -19.60 -0.10 -0.61 15 5 C 0.05 2.39 4.62 29.10 0.13 2.53 15 6 C -0.53 -28.55 9.09 25.60 0.23 -28.32 15 7 H 0.06 3.12 7.74 -2.91 -0.02 3.09 15 8 C 0.01 0.57 5.46 84.66 0.46 1.03 15 9 N -0.93 -54.76 13.29 21.45 0.28 -54.48 15 10 Si 0.95 43.93 29.54 68.60 2.03 45.96 15 11 H -0.26 -11.12 7.11 99.48 0.71 -10.42 15 12 H -0.29 -13.19 7.11 99.48 0.71 -12.48 15 13 H -0.27 -12.37 7.11 99.48 0.71 -11.67 15 14 C -0.09 -2.39 9.67 22.23 0.21 -2.17 15 15 C -0.06 -1.09 10.04 22.33 0.22 -0.87 15 16 C -0.08 -1.48 9.42 22.23 0.21 -1.27 15 17 C -0.15 -4.24 5.40 -19.59 -0.11 -4.34 15 18 C 0.51 14.47 2.89 71.24 0.21 14.68 15 19 F -0.16 -3.60 15.98 44.97 0.72 -2.89 15 20 F -0.19 -6.11 16.53 44.97 0.74 -5.37 15 21 F -0.18 -5.81 16.53 44.97 0.74 -5.07 15 22 H -0.01 -0.28 7.28 -2.38 -0.02 -0.30 15 23 H 0.03 1.63 8.05 -2.39 -0.02 1.61 15 24 H 0.27 14.87 8.31 -92.70 -0.77 14.10 15 25 H 0.16 3.59 8.06 -2.91 -0.02 3.57 15 26 H 0.19 1.36 8.06 -2.91 -0.02 1.33 15 27 H 0.18 2.06 7.15 -2.91 -0.02 2.04 15 Total: -1.00 -68.19 265.51 8.49 -59.71 By element: Atomic # 1 Polarization: -10.35 SS G_CDS: 1.22 Total: -9.12 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: 2.39 Total: -7.33 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: 0.64 Total: -75.89 kcal Atomic # 9 Polarization: -15.53 SS G_CDS: 2.20 Total: -13.32 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -68.19 8.49 -59.71 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396120643.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.460 kcal (2) G-P(sol) polarization free energy of solvation -68.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds