Wall clock time and date at job start Mon Mar 30 2020 06:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39647 * 120.15302 * 56.24663 * 3 2 1 5 5 C 1.37929 * 119.84960 * 179.97438 * 4 3 2 6 6 C 1.38386 * 120.14824 * 0.25985 * 5 4 3 7 7 C 1.38344 * 120.30463 * 359.47915 * 6 5 4 8 8 C 1.50701 * 119.92135 * 180.28249 * 7 6 5 9 9 F 1.39891 * 109.47236 * 0.23647 * 8 7 6 10 10 F 1.39902 * 109.47013 * 120.23592 * 8 7 6 11 11 F 1.39895 * 109.46972 * 240.23439 * 8 7 6 12 12 C 1.37967 * 120.15132 * 0.51756 * 7 6 5 13 13 C 1.50697 * 120.07744 * 179.72109 * 12 7 6 14 14 C 1.50703 * 109.47089 * 270.02440 * 13 12 7 15 15 H 1.08002 * 120.00005 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00093 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99726 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00126 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47004 * 89.99844 * 18 16 14 20 20 H 1.48498 * 109.47104 * 209.99708 * 18 16 14 21 21 H 1.48498 * 109.47108 * 329.99535 * 18 16 14 22 22 H 1.07999 * 120.07581 * 359.97438 * 4 3 2 23 23 H 1.08002 * 119.92294 * 179.97438 * 5 4 3 24 24 H 1.07996 * 119.84178 * 179.74774 * 6 5 4 25 25 H 1.09004 * 109.46775 * 30.02176 * 13 12 7 26 26 H 1.08998 * 109.47143 * 150.02130 * 13 12 7 27 27 H 0.97004 * 119.99618 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2698 -0.6700 -1.0040 5 6 4.6490 -0.6648 -0.9982 6 6 5.3374 -0.0017 0.0025 7 6 4.6486 0.6692 0.9972 8 6 5.4070 1.3939 2.0792 9 9 6.7814 1.2497 1.8619 10 9 5.0709 2.7517 2.0548 11 9 5.0726 0.8530 3.3252 12 6 3.2689 0.6722 1.0035 13 6 2.5203 1.3983 2.0913 14 6 2.2722 0.4590 3.2434 15 1 2.6214 -0.5617 3.1927 16 6 1.5986 0.9025 4.3617 17 7 1.1729 2.1453 4.4231 18 14 1.2905 -0.2620 5.7894 19 1 2.4237 -0.1831 6.7459 20 1 0.0329 0.1225 6.4792 21 1 1.1699 -1.6510 5.2782 22 1 2.7337 -1.1914 -1.7832 23 1 5.1930 -1.1834 -1.7738 24 1 6.4174 -0.0043 0.0045 25 1 3.1117 2.2469 2.4352 26 1 1.5669 1.7542 1.7009 27 1 0.6993 2.4574 5.2100 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396123057.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:40 Heat of formation + Delta-G solvation = -103.224217 kcal Electronic energy + Delta-G solvation = -18730.752965 eV Core-core repulsion = 15231.585278 eV Total energy + Delta-G solvation = -3499.167687 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.55533 -47.15525 -46.81382 -39.45087 -35.90417 -33.74840 -31.92635 -31.53754 -27.75761 -25.50373 -23.97711 -22.73542 -20.87966 -18.78755 -17.86937 -17.76267 -16.49834 -16.45699 -15.66639 -15.26524 -14.53642 -13.92332 -13.85822 -13.60610 -13.48076 -13.39717 -13.08923 -13.02495 -12.63154 -12.43152 -12.34989 -12.09814 -11.93456 -11.62518 -11.28275 -11.01709 -10.66311 -10.54395 -9.84195 -9.64303 -8.96904 -8.48140 -8.38650 -6.11402 -4.15844 0.90658 1.40240 3.11323 3.18766 3.29666 3.34648 3.35669 3.38909 4.11161 4.26614 4.30384 4.41156 4.66441 5.01467 5.07344 5.13060 5.20772 5.29585 5.55959 5.73177 6.08957 6.27081 6.38573 6.44571 6.85899 7.30630 7.37237 7.80751 8.03754 8.09963 8.85191 9.48264 10.99096 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.017020 B = 0.010833 C = 0.007695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.737112 B = 2584.054835 C = 3637.737040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.270 3.730 3 C -0.041 4.041 4 C -0.043 4.043 5 C -0.152 4.152 6 C -0.047 4.047 7 C -0.194 4.194 8 C 0.512 3.488 9 F -0.192 7.192 10 F -0.175 7.175 11 F -0.152 7.152 12 C 0.061 3.939 13 C 0.023 3.977 14 C -0.510 4.510 15 H 0.060 0.940 16 C 0.066 3.934 17 N -0.888 5.888 18 Si 0.896 3.104 19 H -0.277 1.277 20 H -0.285 1.285 21 H -0.273 1.273 22 H 0.133 0.867 23 H 0.136 0.864 24 H 0.137 0.863 25 H 0.052 0.948 26 H 0.039 0.961 27 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.265 -3.742 -9.338 14.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.095 5.095 2 C -0.045 4.045 3 C -0.045 4.045 4 C -0.064 4.064 5 C -0.170 4.170 6 C -0.066 4.066 7 C -0.196 4.196 8 C 0.458 3.542 9 F -0.173 7.173 10 F -0.156 7.156 11 F -0.133 7.133 12 C 0.058 3.942 13 C -0.014 4.014 14 C -0.548 4.548 15 H 0.078 0.922 16 C -0.137 4.137 17 N -0.525 5.525 18 Si 0.723 3.277 19 H -0.203 1.203 20 H -0.211 1.211 21 H -0.197 1.197 22 H 0.151 0.849 23 H 0.153 0.847 24 H 0.155 0.845 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.411 -3.589 -9.185 12.961 hybrid contribution 0.365 -0.432 1.087 1.225 sum 8.775 -4.021 -8.098 12.600 Atomic orbital electron populations 1.81134 1.12023 1.08104 1.08259 1.25234 0.92318 0.93785 0.93195 1.15827 0.85101 1.04929 0.98598 1.21287 0.94398 0.94779 0.95897 1.20835 0.93496 1.02670 0.99968 1.21156 1.00559 0.92938 0.91952 1.19779 0.94179 1.06939 0.98686 1.18088 0.75978 0.77461 0.82685 1.93095 1.33628 1.95679 1.94918 1.93174 1.91823 1.33941 1.96668 1.93348 1.91704 1.85307 1.42899 1.20609 0.91798 0.89377 0.92433 1.18858 0.95935 0.96176 0.90413 1.20765 1.37317 0.96954 0.99728 0.92151 1.24927 0.95160 0.95228 0.98408 1.69944 1.37841 1.15316 1.29439 0.86512 0.77782 0.81096 0.82276 1.20276 1.21097 1.19731 0.84874 0.84653 0.84531 0.93046 0.94304 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -9.02 18.54 41.84 0.78 -8.25 15 2 C 0.27 5.31 13.80 -22.47 -0.31 5.00 15 3 C -0.04 -0.71 5.73 -106.93 -0.61 -1.33 15 4 C -0.04 -0.55 9.76 -39.17 -0.38 -0.93 15 5 C -0.15 -1.67 10.03 -39.64 -0.40 -2.07 15 6 C -0.05 -0.61 9.43 -39.49 -0.37 -0.98 15 7 C -0.19 -3.34 5.37 -104.68 -0.56 -3.90 15 8 C 0.51 9.36 2.81 36.01 0.10 9.46 15 9 F -0.19 -2.99 15.96 2.25 0.04 -2.95 15 10 F -0.17 -3.41 15.33 2.25 0.03 -3.37 15 11 F -0.15 -3.22 15.25 2.25 0.03 -3.19 15 12 C 0.06 1.20 5.07 -104.21 -0.53 0.67 15 13 C 0.02 0.56 4.00 -29.03 -0.12 0.44 15 14 C -0.51 -13.74 7.70 -34.44 -0.27 -14.00 15 15 H 0.06 1.61 7.74 -52.49 -0.41 1.20 15 16 C 0.07 1.84 5.46 -17.82 -0.10 1.74 15 17 N -0.89 -26.07 13.29 55.43 0.74 -25.34 15 18 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 15 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 15 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 15 22 H 0.13 1.29 8.06 -52.49 -0.42 0.86 15 23 H 0.14 0.99 8.06 -52.49 -0.42 0.57 15 24 H 0.14 1.42 7.14 -52.49 -0.37 1.05 15 25 H 0.05 1.33 5.51 -51.93 -0.29 1.04 15 26 H 0.04 1.04 7.09 -51.93 -0.37 0.67 15 27 H 0.26 7.36 8.31 -40.82 -0.34 7.03 15 LS Contribution 260.29 15.07 3.92 3.92 Total: -1.00 -30.28 260.29 -4.44 -34.72 By element: Atomic # 1 Polarization: -4.92 SS G_CDS: -1.42 Total: -6.33 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -3.54 Total: -5.91 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 1.51 Total: -33.58 kcal Atomic # 9 Polarization: -9.62 SS G_CDS: 0.10 Total: -9.51 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.28 -4.44 -34.72 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396123057.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.500 kcal (2) G-P(sol) polarization free energy of solvation -30.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds