Wall clock time and date at job start Mon Mar 30 2020 06:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39647 * 120.15302 * 56.24663 * 3 2 1 5 5 C 1.37929 * 119.84960 * 179.97438 * 4 3 2 6 6 C 1.38386 * 120.14824 * 0.25985 * 5 4 3 7 7 C 1.38344 * 120.30463 * 359.47915 * 6 5 4 8 8 C 1.50701 * 119.92135 * 180.28249 * 7 6 5 9 9 F 1.39891 * 109.47236 * 0.23647 * 8 7 6 10 10 F 1.39902 * 109.47013 * 120.23592 * 8 7 6 11 11 F 1.39895 * 109.46972 * 240.23439 * 8 7 6 12 12 C 1.37967 * 120.15132 * 0.51756 * 7 6 5 13 13 C 1.50697 * 120.07744 * 179.72109 * 12 7 6 14 14 C 1.50703 * 109.47089 * 270.02440 * 13 12 7 15 15 H 1.08002 * 120.00005 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00093 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99726 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00126 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47004 * 89.99844 * 18 16 14 20 20 H 1.48498 * 109.47104 * 209.99708 * 18 16 14 21 21 H 1.48498 * 109.47108 * 329.99535 * 18 16 14 22 22 H 1.07999 * 120.07581 * 359.97438 * 4 3 2 23 23 H 1.08002 * 119.92294 * 179.97438 * 5 4 3 24 24 H 1.07996 * 119.84178 * 179.74774 * 6 5 4 25 25 H 1.09004 * 109.46775 * 30.02176 * 13 12 7 26 26 H 1.08998 * 109.47143 * 150.02130 * 13 12 7 27 27 H 0.97004 * 119.99618 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2698 -0.6700 -1.0040 5 6 4.6490 -0.6648 -0.9982 6 6 5.3374 -0.0017 0.0025 7 6 4.6486 0.6692 0.9972 8 6 5.4070 1.3939 2.0792 9 9 6.7814 1.2497 1.8619 10 9 5.0709 2.7517 2.0548 11 9 5.0726 0.8530 3.3252 12 6 3.2689 0.6722 1.0035 13 6 2.5203 1.3983 2.0913 14 6 2.2722 0.4590 3.2434 15 1 2.6214 -0.5617 3.1927 16 6 1.5986 0.9025 4.3617 17 7 1.1729 2.1453 4.4231 18 14 1.2905 -0.2620 5.7894 19 1 2.4237 -0.1831 6.7459 20 1 0.0329 0.1225 6.4792 21 1 1.1699 -1.6510 5.2782 22 1 2.7337 -1.1914 -1.7832 23 1 5.1930 -1.1834 -1.7738 24 1 6.4174 -0.0043 0.0045 25 1 3.1117 2.2469 2.4352 26 1 1.5669 1.7542 1.7009 27 1 0.6993 2.4574 5.2100 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396123057.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:39 Heat of formation + Delta-G solvation = -120.840118 kcal Electronic energy + Delta-G solvation = -18731.516847 eV Core-core repulsion = 15231.585278 eV Total energy + Delta-G solvation = -3499.931570 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -51.00251 -48.55612 -48.36038 -40.70294 -37.43094 -35.58086 -33.45407 -32.92077 -29.47243 -26.88806 -25.63199 -24.22794 -22.28008 -20.10432 -19.28178 -19.24053 -18.58948 -17.83438 -16.97723 -16.56863 -16.30484 -15.41957 -15.30516 -15.07015 -14.90149 -14.75250 -14.61603 -14.57917 -14.35370 -14.09279 -13.76856 -13.53124 -13.38347 -13.29525 -12.90469 -12.73741 -12.43017 -12.17871 -11.63095 -11.56289 -10.62501 -10.15934 -9.72481 -8.24396 -6.34330 -0.26172 0.16125 1.35564 1.36600 1.46167 1.64598 1.89631 1.91894 2.36164 2.78334 2.90303 2.96028 3.10161 3.32565 3.61636 3.89308 4.07224 4.09371 4.43782 4.65767 4.84975 4.95864 5.24567 5.28278 5.29003 5.55844 5.67679 5.78414 6.03924 6.53972 6.74655 7.32921 8.86395 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.017020 B = 0.010833 C = 0.007695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.737112 B = 2584.054835 C = 3637.737040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.282 3.718 3 C -0.063 4.063 4 C -0.022 4.022 5 C -0.119 4.119 6 C -0.032 4.032 7 C -0.207 4.207 8 C 0.507 3.493 9 F -0.173 7.173 10 F -0.189 7.189 11 F -0.176 7.176 12 C 0.028 3.972 13 C 0.032 3.968 14 C -0.509 4.509 15 H 0.059 0.941 16 C 0.008 3.992 17 N -0.928 5.928 18 Si 0.954 3.046 19 H -0.268 1.268 20 H -0.284 1.284 21 H -0.264 1.264 22 H 0.173 0.827 23 H 0.194 0.806 24 H 0.171 0.829 25 H 0.028 0.972 26 H 0.002 0.998 27 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.615 -6.133 -11.495 18.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.032 4.032 3 C -0.066 4.066 4 C -0.042 4.042 5 C -0.137 4.137 6 C -0.051 4.051 7 C -0.208 4.208 8 C 0.453 3.547 9 F -0.154 7.154 10 F -0.170 7.170 11 F -0.157 7.157 12 C 0.025 3.975 13 C -0.005 4.005 14 C -0.547 4.547 15 H 0.077 0.923 16 C -0.191 4.191 17 N -0.568 5.568 18 Si 0.778 3.222 19 H -0.193 1.193 20 H -0.210 1.210 21 H -0.189 1.189 22 H 0.190 0.810 23 H 0.211 0.789 24 H 0.189 0.811 25 H 0.047 0.953 26 H 0.021 0.979 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.775 -5.991 -11.353 16.760 hybrid contribution -0.223 0.299 1.635 1.677 sum 10.553 -5.692 -9.717 15.434 Atomic orbital electron populations 1.81119 1.13459 1.09994 1.09892 1.25813 0.93033 0.92426 0.91893 1.16009 0.83739 1.06767 1.00087 1.21769 0.95352 0.92535 0.94509 1.21502 0.92639 1.00015 0.99514 1.21631 1.02246 0.90824 0.90366 1.19760 0.93014 1.08297 0.99753 1.18348 0.77002 0.76973 0.82336 1.93117 1.32081 1.95531 1.94707 1.93142 1.92072 1.35148 1.96677 1.93288 1.92082 1.85598 1.44770 1.20125 0.92909 0.91762 0.92714 1.18477 0.94535 0.95761 0.91691 1.21084 1.35964 0.97153 1.00488 0.92257 1.25798 0.95373 0.96640 1.01253 1.70073 1.39322 1.17171 1.30236 0.85606 0.77788 0.79395 0.79388 1.19344 1.20966 1.18866 0.80968 0.78880 0.81139 0.95343 0.97948 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -20.69 18.54 19.00 0.35 -20.34 15 2 C 0.28 11.20 13.80 88.33 1.22 12.42 15 3 C -0.06 -2.08 5.73 -21.36 -0.12 -2.20 15 4 C -0.02 -0.44 9.76 22.54 0.22 -0.22 15 5 C -0.12 -1.79 10.03 22.23 0.22 -1.57 15 6 C -0.03 -0.67 9.43 22.33 0.21 -0.46 15 7 C -0.21 -6.75 5.37 -19.90 -0.11 -6.85 15 8 C 0.51 18.35 2.81 71.24 0.20 18.55 15 9 F -0.17 -5.03 15.96 44.97 0.72 -4.31 15 10 F -0.19 -7.59 15.33 44.97 0.69 -6.90 15 11 F -0.18 -7.63 15.25 44.97 0.69 -6.94 15 12 C 0.03 1.10 5.07 -19.60 -0.10 1.00 15 13 C 0.03 1.66 4.00 29.10 0.12 1.78 15 14 C -0.51 -28.38 7.70 25.60 0.20 -28.19 15 15 H 0.06 3.23 7.74 -2.91 -0.02 3.21 15 16 C 0.01 0.45 5.46 84.65 0.46 0.91 15 17 N -0.93 -57.08 13.29 21.45 0.28 -56.80 15 18 Si 0.95 45.43 29.54 68.60 2.03 47.46 15 19 H -0.27 -12.29 7.11 99.48 0.71 -11.59 15 20 H -0.28 -13.36 7.11 99.48 0.71 -12.65 15 21 H -0.26 -12.11 7.11 99.48 0.71 -11.41 15 22 H 0.17 2.22 8.06 -2.91 -0.02 2.19 15 23 H 0.19 0.93 8.06 -2.91 -0.02 0.90 15 24 H 0.17 2.44 7.14 -2.91 -0.02 2.42 15 25 H 0.03 1.57 5.51 -2.39 -0.01 1.56 15 26 H 0.00 0.13 7.09 -2.39 -0.02 0.11 15 27 H 0.26 15.36 8.31 -92.71 -0.77 14.59 15 Total: -1.00 -71.81 260.29 8.51 -63.30 By element: Atomic # 1 Polarization: -11.88 SS G_CDS: 1.23 Total: -10.65 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: 2.52 Total: -4.82 kcal Atomic # 7 Polarization: -77.77 SS G_CDS: 0.64 Total: -77.13 kcal Atomic # 9 Polarization: -20.25 SS G_CDS: 2.09 Total: -18.15 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -71.81 8.51 -63.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396123057.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.537 kcal (2) G-P(sol) polarization free energy of solvation -71.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds