Wall clock time and date at job start Mon Mar 30 2020 06:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86801 * 120.00006 * 2 1 4 4 H 1.48495 * 109.47588 * 239.99792 * 3 2 1 5 5 H 1.48504 * 109.47062 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47092 * 119.99827 * 3 2 1 7 7 C 1.39882 * 120.00498 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00312 * 197.91967 * 7 2 1 9 9 C 1.41350 * 119.99777 * 17.91651 * 7 2 1 10 10 C 1.41034 * 120.06952 * 204.54407 * 9 7 2 11 11 C 1.36286 * 120.35848 * 180.02562 * 10 9 7 12 12 C 1.39131 * 120.33875 * 359.97438 * 11 10 9 13 13 O 1.35203 * 133.53060 * 180.02562 * 12 11 10 14 14 C 1.34407 * 108.26338 * 180.02562 * 13 12 11 15 15 O 1.35170 * 124.87873 * 179.97438 * 14 13 12 16 16 C 1.42900 * 116.99694 * 359.97081 * 15 14 13 17 17 F 1.39894 * 109.47516 * 300.00082 * 16 15 14 18 18 F 1.39904 * 109.47101 * 60.00268 * 16 15 14 19 19 N 1.30586 * 110.23930 * 359.97438 * 14 13 12 20 20 C 1.36253 * 108.68324 * 0.02562 * 19 14 13 21 21 C 1.38938 * 133.59990 * 180.02562 * 20 19 14 22 22 H 0.97001 * 120.00516 * 0.02562 * 1 2 3 23 23 H 1.08000 * 119.82305 * 0.02562 * 10 9 7 24 24 H 1.08005 * 119.82949 * 180.02562 * 11 10 9 25 25 H 1.08999 * 109.46489 * 179.97438 * 16 15 14 26 26 H 1.07996 * 120.30696 * 359.69771 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0965 1.6965 -1.2124 5 1 1.2777 2.7465 0.0006 6 1 3.0965 1.6964 1.2126 7 6 2.0082 -1.2114 0.0005 8 1 3.0489 -1.2339 0.2883 9 6 1.3529 -2.4060 -0.3755 10 6 1.8285 -3.6495 0.0900 11 6 1.2015 -4.8050 -0.2694 12 6 0.0851 -4.7701 -1.0989 13 8 -0.7245 -5.7241 -1.6112 14 6 -1.6629 -5.1218 -2.3615 15 8 -2.6461 -5.7633 -3.0315 16 6 -2.6794 -7.1881 -2.9271 17 9 -1.4817 -7.7198 -3.4170 18 9 -2.8378 -7.5538 -1.5861 19 7 -1.4884 -3.8277 -2.3501 20 6 -0.4056 -3.5401 -1.5747 21 6 0.2272 -2.3571 -1.2134 22 1 -0.4851 0.8400 -0.0004 23 1 2.6942 -3.6863 0.7346 24 1 1.5727 -5.7525 0.0924 25 1 -3.5148 -7.5756 -3.5102 26 1 -0.1405 -1.4092 -1.5775 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396126043.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:19 Heat of formation + Delta-G solvation = -111.243038 kcal Electronic energy + Delta-G solvation = -18206.493630 eV Core-core repulsion = 14694.605431 eV Total energy + Delta-G solvation = -3511.888198 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.049 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.31565 -47.43313 -42.12397 -38.54967 -36.75385 -33.88460 -33.40653 -29.52400 -28.72575 -26.42640 -25.36789 -22.39429 -21.54964 -20.71336 -19.08930 -18.37436 -18.12312 -17.58737 -16.29936 -16.16984 -15.89224 -15.45697 -14.63647 -14.22863 -13.77327 -13.56441 -13.34647 -13.31772 -12.88376 -12.73260 -12.41445 -12.00285 -11.56226 -11.18849 -11.09186 -10.69937 -10.34366 -10.14253 -10.12124 -9.41647 -9.19068 -7.53666 -7.26299 -6.86957 -4.50068 1.87093 1.98967 2.56355 3.01655 3.03273 3.04550 3.09837 3.44979 3.51595 3.85795 4.17465 4.42694 4.47649 5.30609 5.43072 5.78080 6.07062 6.36128 6.55753 6.64999 6.97729 7.05108 7.29565 7.44520 7.58360 7.70965 7.92352 8.23743 8.59557 8.69547 8.72804 10.07004 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.049566 B = 0.005191 C = 0.004894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.772993 B = 5392.295354 C = 5719.935416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.454 4.454 8 H 0.085 0.915 9 C 0.106 3.894 10 C -0.168 4.168 11 C -0.069 4.069 12 C -0.103 4.103 13 O -0.242 6.242 14 C 0.372 3.628 15 O -0.263 6.263 16 C 0.417 3.583 17 F -0.192 7.192 18 F -0.192 7.192 19 N -0.461 5.461 20 C 0.061 3.939 21 C -0.133 4.133 22 H 0.286 0.714 23 H 0.116 0.884 24 H 0.105 0.895 25 H 0.194 0.806 26 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.308 -8.659 -3.691 9.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.146 4.146 3 Si 0.737 3.263 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.483 4.483 8 H 0.103 0.897 9 C 0.102 3.898 10 C -0.188 4.188 11 C -0.088 4.088 12 C -0.150 4.150 13 O -0.138 6.138 14 C 0.124 3.876 15 O -0.176 6.176 16 C 0.327 3.673 17 F -0.174 7.174 18 F -0.173 7.173 19 N -0.207 5.207 20 C -0.048 4.048 21 C -0.154 4.154 22 H 0.097 0.903 23 H 0.134 0.866 24 H 0.123 0.877 25 H 0.210 0.790 26 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.018 -8.095 -4.074 9.913 hybrid contribution 0.619 -0.153 0.442 0.776 sum -3.400 -8.248 -3.631 9.632 Atomic orbital electron populations 1.69821 1.07656 1.29912 1.33192 1.25965 0.94781 1.01617 0.92204 0.86290 0.80098 0.79880 0.80070 1.18643 1.20217 1.18891 1.19497 0.98282 0.90855 1.39662 0.89723 1.17420 0.91000 0.92300 0.89040 1.20796 1.02397 0.91685 1.03888 1.19055 0.93009 0.98468 0.98269 1.19663 0.99729 0.85350 1.10253 1.84240 1.36630 1.37570 1.55360 1.22687 0.86449 0.86372 0.92077 1.86741 1.44452 1.20689 1.65699 1.23494 0.87058 0.77128 0.79632 1.93141 1.50880 1.85910 1.87434 1.93147 1.95662 1.90991 1.37537 1.70801 1.19451 1.06917 1.23549 1.19520 0.92501 0.95167 0.97633 1.20430 0.99085 0.94303 1.01554 0.90329 0.86591 0.87662 0.79033 0.84910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.86 10.96 55.54 0.61 -19.25 15 2 C 0.07 1.79 5.13 -17.35 -0.09 1.70 15 3 Si 0.91 17.91 29.59 -169.99 -5.03 12.88 15 4 H -0.26 -5.12 7.11 56.52 0.40 -4.71 15 5 H -0.28 -5.35 7.11 56.52 0.40 -4.95 15 6 H -0.26 -5.08 7.11 56.52 0.40 -4.67 15 7 C -0.45 -11.38 9.04 -37.78 -0.34 -11.72 15 8 H 0.08 1.97 7.91 -52.49 -0.41 1.56 15 9 C 0.11 2.73 5.57 -106.83 -0.60 2.14 15 10 C -0.17 -3.87 9.71 -39.23 -0.38 -4.25 15 11 C -0.07 -1.54 9.98 -39.95 -0.40 -1.94 15 12 C -0.10 -2.53 7.44 -38.31 -0.28 -2.82 15 13 O -0.24 -5.53 9.47 -20.41 -0.19 -5.72 15 14 C 0.37 8.16 8.52 52.23 0.44 8.61 15 15 O -0.26 -4.41 10.48 -40.50 -0.42 -4.83 15 16 C 0.42 4.97 6.12 101.05 0.62 5.59 15 17 F -0.19 -2.68 16.84 2.25 0.04 -2.65 15 18 F -0.19 -2.71 16.84 2.25 0.04 -2.68 15 19 N -0.46 -11.51 11.38 -12.82 -0.15 -11.65 15 20 C 0.06 1.59 7.22 -84.71 -0.61 0.98 15 21 C -0.13 -3.56 8.74 -38.50 -0.34 -3.90 15 22 H 0.29 6.62 8.30 -40.82 -0.34 6.28 15 23 H 0.12 2.34 8.06 -52.49 -0.42 1.92 15 24 H 0.11 2.01 8.06 -52.48 -0.42 1.59 15 25 H 0.19 0.95 8.14 -51.93 -0.42 0.53 15 26 H 0.13 3.71 6.17 -52.49 -0.32 3.38 15 LS Contribution 250.99 15.07 3.78 3.78 Total: -1.00 -30.36 250.99 -4.44 -34.80 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -1.14 Total: 0.92 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -1.98 Total: -5.60 kcal Atomic # 7 Polarization: -31.36 SS G_CDS: 0.46 Total: -30.90 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -0.62 Total: -10.56 kcal Atomic # 9 Polarization: -5.40 SS G_CDS: 0.08 Total: -5.32 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.36 -4.44 -34.80 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396126043.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.442 kcal (2) G-P(sol) polarization free energy of solvation -30.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds