Wall clock time and date at job start Mon Mar 30 2020 06:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35944 * 117.00300 * 2 1 4 4 C 1.38264 * 121.64029 * 180.02562 * 3 2 1 5 5 C 1.35059 * 114.72264 * 179.97438 * 4 3 2 6 6 C 1.50706 * 127.19981 * 179.97438 * 5 4 3 7 7 H 1.09002 * 110.27471 * 339.29782 * 6 5 4 8 8 C 1.54945 * 110.39154 * 101.44425 * 6 5 4 9 9 C 1.55304 * 100.94045 * 155.40188 * 8 6 5 10 10 C 1.54376 * 102.25567 * 325.86882 * 9 8 6 11 11 H 1.08999 * 109.83271 * 261.84174 * 10 9 8 12 12 C 1.50706 * 109.83383 * 140.86742 * 10 9 8 13 13 H 1.08001 * 119.99888 * 0.41182 * 12 10 9 14 14 C 1.37882 * 119.99822 * 180.41248 * 12 10 9 15 15 N 1.31513 * 120.00223 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 119.99414 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47155 * 90.00380 * 16 14 12 18 18 H 1.48506 * 109.46932 * 209.99789 * 16 14 12 19 19 H 1.48495 * 109.47496 * 329.99937 * 16 14 12 20 20 O 1.43240 * 107.58930 * 21.35352 * 10 9 8 21 21 S 1.72030 * 105.60263 * 0.22517 * 5 4 3 22 22 N 1.30339 * 121.63943 * 359.97438 * 3 2 1 23 23 H 1.08995 * 109.47106 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46744 * 299.99598 * 1 2 3 25 25 H 1.08997 * 109.47379 * 59.99720 * 1 2 3 26 26 H 1.07995 * 122.63978 * 0.02562 * 4 3 2 27 27 H 1.08997 * 111.12470 * 273.31907 * 8 6 5 28 28 H 1.08995 * 111.12619 * 37.48895 * 8 6 5 29 29 H 1.08998 * 110.85543 * 207.67443 * 9 8 6 30 30 H 1.09009 * 111.02412 * 84.13543 * 9 8 6 31 31 H 0.96993 * 119.99682 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2112 0.0000 4 6 3.4244 1.3230 -0.0005 5 6 3.8882 2.5915 -0.0010 6 6 5.3285 3.0350 -0.0011 7 1 5.9710 2.2322 0.3607 8 6 5.7598 3.4687 -1.4247 9 6 6.9289 4.4368 -1.0964 10 6 6.4586 5.0826 0.2246 11 1 6.0054 6.0528 0.0211 12 6 7.6301 5.2493 1.1578 13 1 8.6162 4.9365 0.8477 14 6 7.4429 5.8011 2.4074 15 7 6.2420 6.1814 2.7852 16 14 8.8950 6.0070 3.5644 17 1 9.5189 7.3363 3.3439 18 1 8.4260 5.9073 4.9699 19 1 9.8943 4.9411 3.2992 20 8 5.4892 4.2075 0.8131 21 16 2.4910 3.5950 0.0058 22 7 1.3680 2.3243 -0.0005 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 4.0785 0.4637 -0.0014 27 1 6.1080 2.6154 -2.0067 28 1 4.9516 3.9890 -1.9386 29 1 7.0410 5.1888 -1.8774 30 1 7.8605 3.8897 -0.9506 31 1 6.1105 6.5699 3.6641 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399106097.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:03 Heat of formation + Delta-G solvation = -39.943312 kcal Electronic energy + Delta-G solvation = -16535.030625 eV Core-core repulsion = 13715.907696 eV Total energy + Delta-G solvation = -2819.122929 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.91008 -38.40364 -36.40756 -32.82805 -31.49364 -30.97729 -28.54437 -27.52750 -25.00096 -23.09281 -21.25992 -20.35264 -19.85568 -17.79909 -17.08061 -16.58413 -16.03868 -15.63746 -14.96435 -14.58734 -14.10497 -13.75591 -13.32586 -13.03291 -12.63995 -12.31736 -11.96010 -11.80064 -11.36515 -10.97749 -10.91688 -10.82237 -10.65508 -10.47133 -10.32858 -10.28914 -10.01552 -9.30937 -9.12389 -8.58149 -8.06525 -7.96638 -6.02796 -4.17588 1.01165 1.72504 2.13350 2.71735 3.27812 3.30099 3.36453 3.38738 4.40041 4.69792 5.08564 5.13520 5.21658 5.25900 5.35451 5.39921 5.49459 5.62674 5.79628 5.90464 6.08462 6.18998 6.32970 6.39279 6.47796 6.57579 6.70391 7.25566 7.54551 7.84174 8.20420 8.42794 8.95469 9.54728 11.03674 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.035154 B = 0.005387 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.307318 B = 5196.385201 C = 5462.201674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.301 6.301 3 C 0.307 3.693 4 C -0.226 4.226 5 C -0.123 4.123 6 C 0.142 3.858 7 H 0.081 0.919 8 C -0.146 4.146 9 C -0.144 4.144 10 C 0.204 3.796 11 H 0.044 0.956 12 C -0.547 4.547 13 H 0.061 0.939 14 C 0.080 3.920 15 N -0.860 5.860 16 Si 0.890 3.110 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.273 1.273 20 O -0.348 6.348 21 S 0.332 5.668 22 N -0.555 5.555 23 H 0.096 0.904 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.159 0.841 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.969 -8.668 -7.286 13.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.208 6.208 3 C 0.094 3.906 4 C -0.261 4.261 5 C -0.252 4.252 6 C 0.081 3.919 7 H 0.099 0.901 8 C -0.185 4.185 9 C -0.181 4.181 10 C 0.149 3.851 11 H 0.061 0.939 12 C -0.585 4.585 13 H 0.079 0.921 14 C -0.126 4.126 15 N -0.496 5.496 16 Si 0.717 3.283 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.198 1.198 20 O -0.267 6.267 21 S 0.482 5.518 22 N -0.396 5.396 23 H 0.115 0.885 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.177 0.823 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.535 -7.206 -6.938 13.150 hybrid contribution 1.659 -1.488 0.606 2.309 sum -6.876 -8.694 -6.332 12.766 Atomic orbital electron populations 1.22879 0.77466 1.02935 1.02369 1.86233 1.22390 1.23381 1.88752 1.20034 0.89901 0.84903 0.95785 1.20007 0.92483 0.98758 1.14847 1.25789 1.03259 0.96999 0.99177 1.21103 0.85689 0.93183 0.91936 0.90107 1.23288 0.99380 0.99872 0.95913 1.23230 0.97456 0.97951 0.99498 1.20395 0.87439 0.89092 0.88145 0.93864 1.21363 0.93432 1.42776 1.00906 0.92089 1.25062 0.95462 0.94077 0.98021 1.70022 1.20817 1.38932 1.19836 0.86654 0.82799 0.78508 0.80316 1.20527 1.21102 1.19790 1.88877 1.62829 1.28321 1.46705 1.84221 0.88983 1.11134 1.67463 1.76335 1.27787 1.01885 1.33551 0.88544 0.92377 0.92469 0.82302 0.90955 0.91185 0.91719 0.91142 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.47 101.05 1.06 1.48 16 2 O -0.30 -4.38 10.54 -19.56 -0.21 -4.58 16 3 C 0.31 5.07 7.42 -18.18 -0.13 4.94 16 4 C -0.23 -3.67 10.15 -40.70 -0.41 -4.09 16 5 C -0.12 -2.19 5.60 -35.44 -0.20 -2.39 16 6 C 0.14 2.74 3.95 -26.85 -0.11 2.63 16 7 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 8 C -0.15 -2.43 6.56 -24.48 -0.16 -2.59 16 9 C -0.14 -2.74 6.53 -24.79 -0.16 -2.90 16 10 C 0.20 5.00 3.36 -27.16 -0.09 4.91 16 11 H 0.04 1.15 8.14 -51.93 -0.42 0.72 16 12 C -0.55 -14.79 8.75 -34.44 -0.30 -15.09 16 13 H 0.06 1.60 7.52 -52.49 -0.39 1.20 16 14 C 0.08 2.22 5.41 -17.82 -0.10 2.12 16 15 N -0.86 -25.11 12.91 55.43 0.72 -24.39 16 16 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 20 O -0.35 -8.57 10.05 -35.23 -0.35 -8.93 16 21 S 0.33 5.91 23.56 -107.50 -2.53 3.38 16 22 N -0.56 -9.61 11.14 28.92 0.32 -9.29 16 23 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.16 2.22 8.06 -52.49 -0.42 1.80 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.07 1.12 8.05 -51.93 -0.42 0.70 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.07 1.33 7.65 -51.92 -0.40 0.93 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 283.81 15.07 4.28 4.28 Total: -1.00 -30.37 283.81 -7.13 -37.50 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: -3.73 Total: -2.96 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -0.61 Total: -10.98 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 1.04 Total: -33.68 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.56 Total: -13.51 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 5.91 SS G_CDS: -2.53 Total: 3.38 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.37 -7.13 -37.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399106097.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.443 kcal (2) G-P(sol) polarization free energy of solvation -30.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds