Wall clock time and date at job start Mon Mar 30 2020 06:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35955 * 117.00032 * 2 1 4 4 C 1.38259 * 121.64226 * 179.73947 * 3 2 1 5 5 C 1.35058 * 114.72556 * 179.80683 * 4 3 2 6 6 C 1.50699 * 127.20265 * 180.17399 * 5 4 3 7 7 H 1.08998 * 109.87018 * 339.61226 * 6 5 4 8 8 C 1.54102 * 109.87533 * 100.61795 * 6 5 4 9 9 C 1.54815 * 104.18586 * 121.45814 * 8 6 5 10 10 C 1.54991 * 102.09567 * 20.87678 * 9 8 6 11 11 H 1.09002 * 110.61615 * 81.63712 * 10 9 8 12 12 C 1.50698 * 110.62174 * 204.47514 * 10 9 8 13 13 H 1.08007 * 119.99673 * 0.02562 * 12 10 9 14 14 C 1.37876 * 120.00375 * 179.97438 * 12 10 9 15 15 N 1.31516 * 119.99813 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00221 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47117 * 90.00327 * 16 14 12 18 18 H 1.48495 * 109.47079 * 210.00465 * 16 14 12 19 19 H 1.48501 * 109.46705 * 330.00097 * 16 14 12 20 20 O 1.43743 * 109.88022 * 218.60066 * 6 5 4 21 21 S 1.72028 * 105.59832 * 0.41602 * 5 4 3 22 22 N 1.30347 * 121.63697 * 0.02736 * 3 2 1 23 23 H 1.09007 * 109.46630 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47230 * 299.99883 * 1 2 3 25 25 H 1.08995 * 109.47007 * 60.00340 * 1 2 3 26 26 H 1.08007 * 122.63984 * 0.02562 * 4 3 2 27 27 H 1.09001 * 110.48559 * 240.12769 * 8 6 5 28 28 H 1.08998 * 110.48821 * 2.77758 * 8 6 5 29 29 H 1.08996 * 110.90623 * 139.07861 * 9 8 6 30 30 H 1.09000 * 110.90279 * 262.64339 * 9 8 6 31 31 H 0.97000 * 120.00189 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 3.4243 1.3233 0.0054 5 6 3.8881 2.5917 0.0005 6 6 5.3283 3.0353 0.0007 7 1 5.9647 2.2276 0.3622 8 6 5.7525 3.4384 -1.4249 9 6 6.2042 4.9125 -1.2837 10 6 6.5054 5.0160 0.2331 11 1 7.4974 4.6228 0.4552 12 6 6.3849 6.4432 0.7019 13 1 6.1190 7.2210 0.0014 14 6 6.6130 6.7557 2.0252 15 7 6.9363 5.8084 2.8784 16 14 6.4630 8.5246 2.6065 17 1 5.0680 8.7855 3.0433 18 1 7.3889 8.7518 3.7450 19 1 6.8130 9.4428 1.4930 20 8 5.4833 4.1925 0.8392 21 16 2.4908 3.5951 0.0010 22 7 1.3678 2.3244 0.0005 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 4.0785 0.4639 0.0094 27 1 6.5801 2.8169 -1.7668 28 1 4.9083 3.3620 -2.1101 29 1 7.1018 5.1023 -1.8723 30 1 5.4028 5.5939 -1.5692 31 1 7.0971 6.0283 3.8093 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399106101.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:05 Heat of formation + Delta-G solvation = -62.391556 kcal Electronic energy + Delta-G solvation = -16554.878370 eV Core-core repulsion = 13734.782012 eV Total energy + Delta-G solvation = -2820.096358 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.15662 -40.00940 -37.65660 -34.82898 -33.09764 -32.52698 -30.06396 -28.72615 -26.73208 -24.50924 -22.81897 -22.11524 -21.01329 -19.16444 -18.70539 -18.28307 -17.24272 -16.99427 -16.63138 -15.97462 -15.77429 -15.44447 -14.57219 -14.51672 -14.23998 -14.01458 -13.57457 -12.93337 -12.86675 -12.64295 -12.41692 -12.35331 -12.15061 -12.09838 -11.95220 -11.65067 -11.42360 -11.06080 -10.73708 -10.52176 -10.06906 -9.34221 -8.16919 -6.36253 -0.33913 0.37370 0.81117 1.41695 1.43525 1.45155 1.54643 2.14117 2.41909 3.03188 3.46785 3.77514 3.87847 3.99197 4.16047 4.33353 4.34502 4.44583 4.51373 4.61557 4.70408 4.74272 4.89106 4.97916 5.12184 5.14011 5.20362 5.52850 5.75728 6.06841 6.14578 6.52816 6.88305 7.39699 8.91626 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.033415 B = 0.005624 C = 0.005251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.741375 B = 4977.120687 C = 5331.226605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.303 6.303 3 C 0.306 3.694 4 C -0.213 4.213 5 C -0.134 4.134 6 C 0.128 3.872 7 H 0.085 0.915 8 C -0.133 4.133 9 C -0.139 4.139 10 C 0.198 3.802 11 H 0.008 0.992 12 C -0.547 4.547 13 H 0.068 0.932 14 C 0.025 3.975 15 N -0.903 5.903 16 Si 0.958 3.042 17 H -0.278 1.278 18 H -0.281 1.281 19 H -0.259 1.259 20 O -0.381 6.381 21 S 0.302 5.698 22 N -0.559 5.559 23 H 0.134 0.866 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.185 0.815 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.619 -9.544 -8.044 14.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.209 6.209 3 C 0.092 3.908 4 C -0.248 4.248 5 C -0.263 4.263 6 C 0.067 3.933 7 H 0.103 0.897 8 C -0.171 4.171 9 C -0.176 4.176 10 C 0.143 3.857 11 H 0.025 0.975 12 C -0.585 4.585 13 H 0.086 0.914 14 C -0.177 4.177 15 N -0.541 5.541 16 Si 0.782 3.218 17 H -0.204 1.204 18 H -0.207 1.207 19 H -0.183 1.183 20 O -0.302 6.302 21 S 0.452 5.548 22 N -0.400 5.400 23 H 0.152 0.848 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.203 0.797 27 H 0.119 0.881 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.030 -8.220 -7.677 14.424 hybrid contribution 0.891 -0.660 0.618 1.270 sum -8.139 -8.880 -7.059 13.961 Atomic orbital electron populations 1.23191 0.75503 1.05400 1.02147 1.86253 1.24304 1.22059 1.88326 1.20242 0.90225 0.85398 0.94968 1.20264 0.92837 0.98847 1.12891 1.25612 1.02450 0.97501 1.00761 1.21138 0.87080 0.91910 0.93169 0.89704 1.22958 1.02510 0.97055 0.94577 1.23102 1.01551 0.95568 0.97418 1.20713 0.86883 0.89705 0.88384 0.97475 1.21429 1.49169 0.92653 0.95212 0.91359 1.25920 0.93268 1.01392 0.97124 1.70141 1.45716 1.34385 1.03839 0.85575 0.77963 0.79981 0.78272 1.20370 1.20672 1.18274 1.89304 1.60238 1.32125 1.48502 1.84360 0.89797 1.12079 1.68558 1.76385 1.27553 1.02026 1.34023 0.84796 0.92884 0.92393 0.79740 0.88079 0.89952 0.89707 0.91857 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.47 113.37 1.19 1.81 16 2 O -0.30 -8.08 10.54 -93.04 -0.98 -9.06 16 3 C 0.31 9.55 7.42 84.92 0.63 10.18 16 4 C -0.21 -6.50 10.15 21.54 0.22 -6.28 16 5 C -0.13 -4.66 5.33 24.95 0.13 -4.53 16 6 C 0.13 4.78 3.93 30.22 0.12 4.90 16 7 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 8 C -0.13 -4.15 6.63 31.59 0.21 -3.94 16 9 C -0.14 -5.24 6.55 31.90 0.21 -5.03 16 10 C 0.20 9.84 3.09 30.53 0.09 9.93 16 11 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 12 C -0.55 -29.99 8.82 25.60 0.23 -29.76 16 13 H 0.07 3.59 7.77 -2.91 -0.02 3.57 16 14 C 0.03 1.41 5.44 84.65 0.46 1.87 16 15 N -0.90 -53.68 13.12 21.45 0.28 -53.40 16 16 Si 0.96 43.35 29.54 68.60 2.03 45.38 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 20 O -0.38 -19.09 10.55 -148.98 -1.57 -20.66 16 21 S 0.30 10.88 23.56 -56.49 -1.33 9.55 16 22 N -0.56 -18.93 11.14 -176.08 -1.96 -20.89 16 23 H 0.13 1.59 8.14 -2.38 -0.02 1.58 16 24 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.19 4.56 8.06 -2.91 -0.02 4.53 16 27 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.08 2.31 7.69 -2.39 -0.02 2.29 16 29 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 30 H 0.06 2.42 8.04 -2.39 -0.02 2.40 16 31 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -65.60 284.44 1.08 -64.52 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 1.13 Total: 5.41 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: 3.49 Total: -20.85 kcal Atomic # 7 Polarization: -72.61 SS G_CDS: -1.68 Total: -74.29 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -2.55 Total: -29.72 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: 10.88 SS G_CDS: -1.33 Total: 9.55 kcal Total: -65.60 1.08 -64.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399106101.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.130 kcal (2) G-P(sol) polarization free energy of solvation -65.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds