Wall clock time and date at job start Mon Mar 30 2020 06:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35953 * 116.99580 * 2 1 4 4 C 1.38265 * 121.63945 * 180.28993 * 3 2 1 5 5 C 1.35061 * 114.72631 * 180.26055 * 4 3 2 6 6 C 1.50698 * 127.20318 * 179.80382 * 5 4 3 7 7 H 1.09005 * 110.32965 * 23.90760 * 6 5 4 8 8 C 1.54486 * 110.36944 * 261.54188 * 6 5 4 9 9 C 1.54510 * 104.06135 * 217.18741 * 8 6 5 10 10 C 1.54487 * 104.06095 * 0.02562 * 9 8 6 11 11 H 1.08993 * 110.37257 * 265.14520 * 10 9 8 12 12 C 1.50698 * 110.36834 * 142.80773 * 10 9 8 13 13 H 1.07996 * 120.00246 * 0.02562 * 12 10 9 14 14 C 1.37881 * 119.99602 * 179.97438 * 12 10 9 15 15 N 1.31509 * 120.00162 * 0.02562 * 14 12 10 16 16 Si 1.86807 * 119.99782 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47196 * 89.99822 * 16 14 12 18 18 H 1.48495 * 109.46972 * 210.00213 * 16 14 12 19 19 H 1.48496 * 109.46903 * 329.99826 * 16 14 12 20 20 O 1.44419 * 104.80357 * 23.97821 * 10 9 8 21 21 S 1.72024 * 105.59753 * 359.53851 * 5 4 3 22 22 N 1.30340 * 121.63928 * 0.02562 * 3 2 1 23 23 H 1.08996 * 109.47556 * 300.00526 * 1 2 3 24 24 H 1.09004 * 109.46962 * 60.00760 * 1 2 3 25 25 H 1.09002 * 109.46761 * 180.02562 * 1 2 3 26 26 H 1.08001 * 122.63760 * 0.08086 * 4 3 2 27 27 H 1.09004 * 110.51003 * 98.54493 * 8 6 5 28 28 H 1.08993 * 110.50905 * 335.83262 * 8 6 5 29 29 H 1.08991 * 110.51125 * 241.35645 * 9 8 6 30 30 H 1.08995 * 110.50842 * 118.64477 * 9 8 6 31 31 H 0.96998 * 119.99761 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 3.4242 1.3233 -0.0060 5 6 3.8880 2.5918 0.0004 6 6 5.3282 3.0354 0.0006 7 1 5.9645 2.2562 -0.4191 8 6 5.7818 3.3892 1.4343 9 6 6.7151 4.6057 1.2434 10 6 6.7145 4.8433 -0.2831 11 1 7.5647 4.3420 -0.7455 12 6 6.7470 6.3196 -0.5841 13 1 6.7670 7.0352 0.2245 14 6 6.7523 6.7565 -1.8918 15 7 6.7285 5.8850 -2.8764 16 14 6.7934 8.5864 -2.2650 17 1 8.2039 9.0389 -2.3690 18 1 6.0944 8.8455 -3.5493 19 1 6.1144 9.3296 -1.1733 20 8 5.4758 4.2630 -0.7463 21 16 2.4907 3.5952 0.0008 22 7 1.3677 2.3243 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 4.0784 0.4640 -0.0122 27 1 6.3262 2.5562 1.8791 28 1 4.9242 3.6588 2.0506 29 1 7.7208 4.3741 1.5938 30 1 6.3188 5.4766 1.7653 31 1 6.7318 6.1924 -3.7963 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399106103.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:06 Heat of formation + Delta-G solvation = -61.941731 kcal Electronic energy + Delta-G solvation = -16519.034709 eV Core-core repulsion = 13698.957856 eV Total energy + Delta-G solvation = -2820.076852 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.15626 -40.00092 -37.66870 -34.82618 -33.08251 -32.54222 -30.06121 -28.73225 -26.71826 -24.52137 -22.96330 -21.95467 -21.01413 -19.17966 -18.77545 -18.28406 -17.20634 -16.88486 -16.58962 -15.98583 -15.86354 -15.39061 -14.65341 -14.53039 -14.30582 -14.01556 -13.56777 -12.93567 -12.84329 -12.66153 -12.45632 -12.35990 -12.09467 -12.04091 -11.91809 -11.65749 -11.42061 -11.07684 -10.75184 -10.52285 -10.09621 -9.35019 -8.16655 -6.36209 -0.35007 0.36044 0.80353 1.41210 1.43141 1.44754 1.54799 2.13122 2.41784 3.02575 3.43748 3.78253 3.92228 4.00308 4.17768 4.33589 4.34789 4.42528 4.54096 4.60810 4.70461 4.74338 4.85391 5.00973 5.10798 5.13455 5.21105 5.52730 5.74963 6.06586 6.13923 6.48728 6.87121 7.39715 8.91734 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.034379 B = 0.005526 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.266769 B = 5065.899308 C = 5454.761642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.302 6.302 3 C 0.306 3.694 4 C -0.210 4.210 5 C -0.131 4.131 6 C 0.124 3.876 7 H 0.087 0.913 8 C -0.130 4.130 9 C -0.138 4.138 10 C 0.196 3.804 11 H 0.004 0.996 12 C -0.549 4.549 13 H 0.068 0.932 14 C 0.025 3.975 15 N -0.903 5.903 16 Si 0.958 3.042 17 H -0.268 1.268 18 H -0.286 1.286 19 H -0.264 1.264 20 O -0.378 6.378 21 S 0.303 5.697 22 N -0.558 5.558 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.134 0.866 26 H 0.187 0.813 27 H 0.104 0.896 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.268 -10.068 7.791 14.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.209 6.209 3 C 0.092 3.908 4 C -0.246 4.246 5 C -0.260 4.260 6 C 0.064 3.936 7 H 0.104 0.896 8 C -0.168 4.168 9 C -0.176 4.176 10 C 0.141 3.859 11 H 0.022 0.978 12 C -0.586 4.586 13 H 0.086 0.914 14 C -0.177 4.177 15 N -0.540 5.540 16 Si 0.783 3.217 17 H -0.193 1.193 18 H -0.212 1.212 19 H -0.188 1.188 20 O -0.298 6.298 21 S 0.453 5.547 22 N -0.399 5.399 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.152 0.848 26 H 0.204 0.796 27 H 0.123 0.877 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.761 -8.685 7.448 14.410 hybrid contribution 0.968 -0.575 -0.557 1.256 sum -7.794 -9.260 6.891 13.928 Atomic orbital electron populations 1.23194 0.75493 1.05412 1.02153 1.86254 1.24305 1.22008 1.88314 1.20233 0.90214 0.85407 0.94954 1.20248 0.92848 0.98773 1.12685 1.25336 1.02048 0.97543 1.01120 1.21345 0.87379 0.90929 0.93941 0.89554 1.22931 0.99981 0.99145 0.94739 1.22944 0.99879 0.97563 0.97213 1.20516 0.82850 0.92915 0.89643 0.97805 1.21470 1.52718 0.91811 0.92616 0.91376 1.25929 0.93187 1.02274 0.96351 1.70145 1.48578 1.35794 0.99491 0.85563 0.78580 0.79900 0.77662 1.19335 1.21160 1.18850 1.89493 1.44120 1.33437 1.62789 1.84392 0.89748 1.12064 1.68529 1.76393 1.27517 1.02034 1.33961 0.92403 0.92865 0.84784 0.79592 0.87748 0.90838 0.90065 0.91744 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.47 113.37 1.19 1.80 16 2 O -0.30 -7.97 10.54 -93.02 -0.98 -8.95 16 3 C 0.31 9.48 7.42 84.92 0.63 10.11 16 4 C -0.21 -6.34 10.15 21.54 0.22 -6.13 16 5 C -0.13 -4.56 5.51 24.95 0.14 -4.42 16 6 C 0.12 4.67 3.80 30.35 0.12 4.79 16 7 H 0.09 3.04 8.14 -2.38 -0.02 3.02 16 8 C -0.13 -4.11 6.62 31.61 0.21 -3.90 16 9 C -0.14 -5.23 6.62 31.61 0.21 -5.02 16 10 C 0.20 9.78 3.06 30.35 0.09 9.88 16 11 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 12 C -0.55 -30.18 8.77 25.60 0.22 -29.96 16 13 H 0.07 3.59 7.57 -2.91 -0.02 3.57 16 14 C 0.02 1.39 5.43 84.66 0.46 1.85 16 15 N -0.90 -53.80 13.07 21.45 0.28 -53.52 16 16 Si 0.96 43.44 29.54 68.60 2.03 45.46 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 18 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 20 O -0.38 -18.98 10.55 -148.98 -1.57 -20.56 16 21 S 0.30 10.90 23.51 -56.49 -1.33 9.58 16 22 N -0.56 -18.81 11.14 -176.08 -1.96 -20.77 16 23 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.19 4.50 8.06 -2.91 -0.02 4.47 16 27 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.07 2.22 7.86 -2.39 -0.02 2.20 16 29 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.06 2.47 7.70 -2.39 -0.02 2.45 16 31 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -65.84 283.99 1.08 -64.76 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: 1.13 Total: 5.00 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: 3.48 Total: -21.00 kcal Atomic # 7 Polarization: -72.61 SS G_CDS: -1.68 Total: -74.29 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -2.55 Total: -29.51 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 10.90 SS G_CDS: -1.33 Total: 9.58 kcal Total: -65.84 1.08 -64.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399106103.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.820 kcal (2) G-P(sol) polarization free energy of solvation -65.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds