Wall clock time and date at job start Mon Mar 30 2020 06:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35954 * 116.99699 * 2 1 4 4 C 1.38269 * 121.64008 * 179.97438 * 3 2 1 5 5 C 1.35057 * 114.72717 * 180.02562 * 4 3 2 6 6 C 1.50696 * 127.19992 * 179.97438 * 5 4 3 7 7 H 1.09000 * 110.27973 * 24.35524 * 6 5 4 8 8 C 1.54953 * 110.39105 * 262.21088 * 6 5 4 9 9 C 1.55310 * 100.93963 * 204.59715 * 8 6 5 10 10 C 1.54381 * 102.25377 * 34.13484 * 9 8 6 11 11 H 1.08998 * 109.90670 * 98.19827 * 10 9 8 12 12 C 1.50701 * 109.82961 * 219.13113 * 10 9 8 13 13 H 1.08002 * 119.99761 * 359.58109 * 12 10 9 14 14 C 1.37871 * 119.99694 * 179.86672 * 12 10 9 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 10 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 10 17 17 H 1.48494 * 109.47230 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47301 * 119.99669 * 16 14 12 19 19 H 1.48498 * 109.47430 * 239.99516 * 16 14 12 20 20 O 1.43244 * 107.58837 * 338.64002 * 10 9 8 21 21 S 1.72024 * 105.59661 * 0.23873 * 5 4 3 22 22 N 1.30341 * 121.64224 * 0.02745 * 3 2 1 23 23 H 1.08996 * 109.47305 * 299.99748 * 1 2 3 24 24 H 1.09005 * 109.46979 * 59.99725 * 1 2 3 25 25 H 1.08996 * 109.47358 * 179.97438 * 1 2 3 26 26 H 1.08000 * 122.63381 * 0.02562 * 4 3 2 27 27 H 1.08992 * 111.12559 * 322.51458 * 8 6 5 28 28 H 1.08999 * 111.11856 * 86.67899 * 8 6 5 29 29 H 1.08998 * 110.84764 * 275.94296 * 9 8 6 30 30 H 1.08999 * 110.84595 * 152.32535 * 9 8 6 31 31 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 3.4243 1.3233 0.0005 5 6 3.8881 2.5918 0.0010 6 6 5.3283 3.0353 0.0022 7 1 5.9638 2.2563 -0.4190 8 6 5.7852 3.3822 1.4416 9 6 6.9488 4.3691 1.1516 10 6 6.4551 5.0935 -0.1191 11 1 6.0066 6.0499 0.1495 12 6 7.6098 5.3172 -1.0613 13 1 8.6012 4.9868 -0.7884 14 6 7.4016 5.9487 -2.2690 15 7 6.1943 6.3510 -2.6013 16 14 8.8342 6.2329 -3.4336 17 1 10.0780 5.6913 -2.8296 18 1 8.5687 5.5445 -4.7224 19 1 8.9951 7.6894 -3.6744 20 8 5.4750 4.2550 -0.7421 21 16 2.4908 3.5951 0.0076 22 7 1.3678 2.3244 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 4.0784 0.4639 0.0006 27 1 4.9866 3.8698 2.0005 28 1 6.1433 2.4953 1.9644 29 1 7.8753 3.8295 0.9554 30 1 7.0752 5.0724 1.9748 31 1 6.0480 6.7956 -3.4508 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399106106.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:08 Heat of formation + Delta-G solvation = -40.017990 kcal Electronic energy + Delta-G solvation = -16534.162301 eV Core-core repulsion = 13715.036134 eV Total energy + Delta-G solvation = -2819.126168 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.90747 -38.40551 -36.40612 -32.83053 -31.49627 -30.97683 -28.54079 -27.52519 -25.00298 -23.09506 -21.26454 -20.35423 -19.84063 -17.79770 -17.07980 -16.58616 -16.03740 -15.64046 -14.96842 -14.58817 -14.10477 -13.74571 -13.32286 -13.03978 -12.64061 -12.32203 -11.96084 -11.79880 -11.37654 -10.97603 -10.93547 -10.81807 -10.63723 -10.46855 -10.31686 -10.28761 -10.01130 -9.31046 -9.11682 -8.58726 -8.06281 -7.96612 -6.03047 -4.17828 1.01622 1.72891 2.14219 2.71734 3.27426 3.29882 3.36663 3.39350 4.39917 4.69111 5.08577 5.13610 5.21687 5.26328 5.35353 5.39713 5.49490 5.62478 5.79982 5.90382 6.08313 6.19133 6.32876 6.39381 6.47609 6.57511 6.70162 7.25726 7.54654 7.84108 8.20266 8.42600 8.95539 9.54620 11.03445 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.035687 B = 0.005375 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.404261 B = 5208.505450 C = 5478.069962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.301 6.301 3 C 0.307 3.693 4 C -0.227 4.227 5 C -0.123 4.123 6 C 0.142 3.858 7 H 0.082 0.918 8 C -0.146 4.146 9 C -0.143 4.143 10 C 0.204 3.796 11 H 0.044 0.956 12 C -0.547 4.547 13 H 0.062 0.938 14 C 0.080 3.920 15 N -0.860 5.860 16 Si 0.889 3.111 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 O -0.348 6.348 21 S 0.334 5.666 22 N -0.556 5.556 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.096 0.904 26 H 0.159 0.841 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.829 -9.086 6.932 13.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.208 6.208 3 C 0.094 3.906 4 C -0.262 4.262 5 C -0.253 4.253 6 C 0.081 3.919 7 H 0.099 0.901 8 C -0.184 4.184 9 C -0.181 4.181 10 C 0.149 3.851 11 H 0.062 0.938 12 C -0.584 4.584 13 H 0.080 0.920 14 C -0.126 4.126 15 N -0.496 5.496 16 Si 0.717 3.283 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.209 1.209 20 O -0.268 6.268 21 S 0.485 5.515 22 N -0.396 5.396 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.114 0.886 26 H 0.177 0.823 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.397 -7.601 6.612 13.115 hybrid contribution 1.639 -1.450 -0.637 2.279 sum -6.758 -9.050 5.975 12.778 Atomic orbital electron populations 1.22877 0.77475 1.02926 1.02369 1.86233 1.22384 1.23391 1.88766 1.20036 0.89893 0.84902 0.95812 1.19992 0.92483 0.98732 1.14983 1.25789 1.03293 0.97013 0.99175 1.21100 0.85681 0.92572 0.92563 0.90078 1.23287 0.99311 1.00028 0.95802 1.23230 0.97514 0.97711 0.99657 1.20403 0.87172 0.89278 0.88254 0.93840 1.21398 0.93651 1.39672 1.03673 0.92034 1.25061 0.95409 0.94265 0.97905 1.70032 1.20288 1.37168 1.22145 0.86603 0.82766 0.77880 0.81075 1.19665 1.20861 1.20881 1.88872 1.62091 1.25754 1.50059 1.84256 0.88904 1.11007 1.67373 1.76333 1.27850 1.01919 1.33535 0.92463 0.92391 0.88551 0.82319 0.91200 0.90955 0.91142 0.91697 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.47 101.05 1.06 1.48 16 2 O -0.30 -4.37 10.54 -19.59 -0.21 -4.58 16 3 C 0.31 5.06 7.42 -18.17 -0.13 4.93 16 4 C -0.23 -3.68 10.15 -40.70 -0.41 -4.09 16 5 C -0.12 -2.20 5.62 -35.44 -0.20 -2.40 16 6 C 0.14 2.73 3.95 -26.85 -0.11 2.63 16 7 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 8 C -0.15 -2.42 6.56 -24.48 -0.16 -2.58 16 9 C -0.14 -2.73 6.53 -24.78 -0.16 -2.90 16 10 C 0.20 4.99 3.36 -27.16 -0.09 4.90 16 11 H 0.04 1.15 8.14 -51.93 -0.42 0.73 16 12 C -0.55 -14.76 8.74 -34.44 -0.30 -15.06 16 13 H 0.06 1.61 7.52 -52.49 -0.39 1.22 16 14 C 0.08 2.21 5.41 -17.82 -0.10 2.12 16 15 N -0.86 -25.09 12.92 55.43 0.72 -24.37 16 16 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 O -0.35 -8.57 10.02 -35.23 -0.35 -8.92 16 21 S 0.33 5.98 23.51 -107.50 -2.53 3.46 16 22 N -0.56 -9.64 11.14 28.92 0.32 -9.31 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.16 2.20 8.06 -52.49 -0.42 1.78 16 27 H 0.07 1.11 8.05 -51.93 -0.42 0.70 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 1.33 7.66 -51.93 -0.40 0.93 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 283.76 15.07 4.28 4.28 Total: -1.00 -30.35 283.76 -7.13 -37.48 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: -3.73 Total: -3.00 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -0.61 Total: -10.98 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 1.04 Total: -33.69 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.56 Total: -13.50 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 5.98 SS G_CDS: -2.53 Total: 3.46 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.35 -7.13 -37.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399106106.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.538 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds