Wall clock time and date at job start Mon Mar 30 2020 06:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35954 * 116.99699 * 2 1 4 4 C 1.38269 * 121.64008 * 179.97438 * 3 2 1 5 5 C 1.35057 * 114.72717 * 180.02562 * 4 3 2 6 6 C 1.50696 * 127.19992 * 179.97438 * 5 4 3 7 7 H 1.09000 * 110.27973 * 24.35524 * 6 5 4 8 8 C 1.54953 * 110.39105 * 262.21088 * 6 5 4 9 9 C 1.55310 * 100.93963 * 204.59715 * 8 6 5 10 10 C 1.54381 * 102.25377 * 34.13484 * 9 8 6 11 11 H 1.08998 * 109.90670 * 98.19827 * 10 9 8 12 12 C 1.50701 * 109.82961 * 219.13113 * 10 9 8 13 13 H 1.08002 * 119.99761 * 359.58109 * 12 10 9 14 14 C 1.37871 * 119.99694 * 179.86672 * 12 10 9 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 10 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 10 17 17 H 1.48494 * 109.47230 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47301 * 119.99669 * 16 14 12 19 19 H 1.48498 * 109.47430 * 239.99516 * 16 14 12 20 20 O 1.43244 * 107.58837 * 338.64002 * 10 9 8 21 21 S 1.72024 * 105.59661 * 0.23873 * 5 4 3 22 22 N 1.30341 * 121.64224 * 0.02745 * 3 2 1 23 23 H 1.08996 * 109.47305 * 299.99748 * 1 2 3 24 24 H 1.09005 * 109.46979 * 59.99725 * 1 2 3 25 25 H 1.08996 * 109.47358 * 179.97438 * 1 2 3 26 26 H 1.08000 * 122.63381 * 0.02562 * 4 3 2 27 27 H 1.08992 * 111.12559 * 322.51458 * 8 6 5 28 28 H 1.08999 * 111.11856 * 86.67899 * 8 6 5 29 29 H 1.08998 * 110.84764 * 275.94296 * 9 8 6 30 30 H 1.08999 * 110.84595 * 152.32535 * 9 8 6 31 31 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 3.4243 1.3233 0.0005 5 6 3.8881 2.5918 0.0010 6 6 5.3283 3.0353 0.0022 7 1 5.9638 2.2563 -0.4190 8 6 5.7852 3.3822 1.4416 9 6 6.9488 4.3691 1.1516 10 6 6.4551 5.0935 -0.1191 11 1 6.0066 6.0499 0.1495 12 6 7.6098 5.3172 -1.0613 13 1 8.6012 4.9868 -0.7884 14 6 7.4016 5.9487 -2.2690 15 7 6.1943 6.3510 -2.6013 16 14 8.8342 6.2329 -3.4336 17 1 10.0780 5.6913 -2.8296 18 1 8.5687 5.5445 -4.7224 19 1 8.9951 7.6894 -3.6744 20 8 5.4750 4.2550 -0.7421 21 16 2.4908 3.5951 0.0076 22 7 1.3678 2.3244 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 4.0784 0.4639 0.0006 27 1 4.9866 3.8698 2.0005 28 1 6.1433 2.4953 1.9644 29 1 7.8753 3.8295 0.9554 30 1 7.0752 5.0724 1.9748 31 1 6.0480 6.7956 -3.4508 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399106106.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:08 Heat of formation + Delta-G solvation = -61.295082 kcal Electronic energy + Delta-G solvation = -16535.084945 eV Core-core repulsion = 13715.036134 eV Total energy + Delta-G solvation = -2820.048811 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.14371 -40.01868 -37.66050 -34.77853 -33.05984 -32.56675 -30.04912 -28.71662 -26.71747 -24.52524 -22.71568 -22.05863 -21.16585 -19.14820 -18.59303 -18.29927 -17.20083 -17.17084 -16.70166 -16.05036 -15.59335 -15.18964 -14.75726 -14.52949 -14.06508 -13.89285 -13.64954 -12.95129 -12.82678 -12.70230 -12.42503 -12.35522 -12.11207 -12.09389 -11.91268 -11.66336 -11.57169 -11.09846 -10.68970 -10.51486 -9.87224 -9.33569 -8.10471 -6.31864 -0.33122 0.37827 0.81556 1.41401 1.43475 1.43961 1.55147 2.14505 2.43210 3.05782 3.44986 3.72395 3.84844 4.00067 4.23336 4.33903 4.34911 4.44216 4.55258 4.64827 4.68766 4.75531 4.87952 4.96277 5.13151 5.14492 5.21135 5.63916 5.78055 6.07500 6.20440 6.57097 7.00229 7.45476 8.96344 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.035687 B = 0.005375 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.404261 B = 5208.505450 C = 5478.069962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.303 6.303 3 C 0.306 3.694 4 C -0.212 4.212 5 C -0.135 4.135 6 C 0.134 3.866 7 H 0.088 0.912 8 C -0.130 4.130 9 C -0.135 4.135 10 C 0.196 3.804 11 H 0.008 0.992 12 C -0.561 4.561 13 H 0.066 0.934 14 C 0.025 3.975 15 N -0.902 5.902 16 Si 0.956 3.044 17 H -0.260 1.260 18 H -0.284 1.284 19 H -0.279 1.279 20 O -0.382 6.382 21 S 0.300 5.700 22 N -0.559 5.559 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.134 0.866 26 H 0.186 0.814 27 H 0.075 0.925 28 H 0.110 0.890 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.286 -11.092 7.699 14.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.209 6.209 3 C 0.092 3.908 4 C -0.247 4.247 5 C -0.264 4.264 6 C 0.074 3.926 7 H 0.106 0.894 8 C -0.169 4.169 9 C -0.172 4.172 10 C 0.140 3.860 11 H 0.026 0.974 12 C -0.598 4.598 13 H 0.084 0.916 14 C -0.177 4.177 15 N -0.539 5.539 16 Si 0.781 3.219 17 H -0.184 1.184 18 H -0.210 1.210 19 H -0.205 1.205 20 O -0.302 6.302 21 S 0.450 5.550 22 N -0.400 5.400 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.152 0.848 26 H 0.203 0.797 27 H 0.093 0.907 28 H 0.128 0.872 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.850 -9.624 7.397 14.455 hybrid contribution 1.366 -0.937 -0.847 1.860 sum -6.485 -10.561 6.550 14.017 Atomic orbital electron populations 1.23189 0.75518 1.05394 1.02140 1.86253 1.24289 1.22049 1.88327 1.20255 0.90245 0.85386 0.94942 1.20240 0.92793 0.98821 1.12884 1.25624 1.02406 0.97548 1.00818 1.21297 0.86755 0.90792 0.93750 0.89441 1.23251 0.98314 1.00806 0.94494 1.23107 0.98402 0.98195 0.97517 1.20294 0.86449 0.89001 0.90235 0.97391 1.21856 0.94705 1.39111 1.04155 0.91602 1.25902 0.97806 0.94221 0.99787 1.70177 1.22480 1.38646 1.22635 0.85565 0.79925 0.77799 0.78635 1.18403 1.21037 1.20454 1.88778 1.62054 1.27738 1.51599 1.84358 0.89892 1.12190 1.68598 1.76387 1.27514 1.02011 1.34073 0.92394 0.92904 0.84798 0.79654 0.90666 0.87170 0.90632 0.89973 0.93106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.47 113.37 1.19 1.81 16 2 O -0.30 -8.03 10.54 -93.03 -0.98 -9.01 16 3 C 0.31 9.51 7.42 84.92 0.63 10.14 16 4 C -0.21 -6.42 10.15 21.54 0.22 -6.20 16 5 C -0.13 -4.67 5.62 24.95 0.14 -4.53 16 6 C 0.13 5.03 3.95 30.51 0.12 5.15 16 7 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 8 C -0.13 -4.03 6.56 32.06 0.21 -3.82 16 9 C -0.13 -4.94 6.53 31.86 0.21 -4.73 16 10 C 0.20 9.72 3.36 30.32 0.10 9.82 16 11 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 12 C -0.56 -30.53 8.74 25.60 0.22 -30.31 16 13 H 0.07 3.42 7.52 -2.91 -0.02 3.40 16 14 C 0.02 1.40 5.41 84.65 0.46 1.85 16 15 N -0.90 -54.15 12.92 21.45 0.28 -53.87 16 16 Si 0.96 43.45 29.54 68.60 2.03 45.47 16 17 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 20 O -0.38 -19.09 10.02 -148.98 -1.49 -20.58 16 21 S 0.30 10.79 23.51 -56.49 -1.33 9.46 16 22 N -0.56 -18.91 11.14 -176.09 -1.96 -20.87 16 23 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 25 H 0.13 1.58 8.14 -2.39 -0.02 1.57 16 26 H 0.19 4.51 8.06 -2.91 -0.02 4.49 16 27 H 0.07 2.26 8.05 -2.39 -0.02 2.24 16 28 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.08 2.69 7.66 -2.39 -0.02 2.67 16 30 H 0.08 2.69 8.14 -2.39 -0.02 2.68 16 31 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -66.34 283.76 1.17 -65.16 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: 1.13 Total: 5.05 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: 3.50 Total: -20.82 kcal Atomic # 7 Polarization: -73.06 SS G_CDS: -1.68 Total: -74.74 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -2.47 Total: -29.59 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: 10.79 SS G_CDS: -1.33 Total: 9.46 kcal Total: -66.34 1.17 -65.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399106106.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.869 kcal (2) G-P(sol) polarization free energy of solvation -66.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds