Wall clock time and date at job start Mon Mar 30 2020 06:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00068 * 2 1 4 4 H 1.48495 * 109.46928 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47281 * 300.00140 * 3 2 1 6 6 H 1.48504 * 109.47001 * 60.00156 * 3 2 1 7 7 C 1.37874 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00365 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00039 * 0.02562 * 7 2 1 10 10 O 1.45194 * 109.47223 * 179.97438 * 9 7 2 11 11 C 1.34659 * 116.99701 * 179.97438 * 10 9 7 12 12 O 1.21506 * 120.00293 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99657 * 179.97438 * 11 10 9 14 14 C 1.40003 * 119.99915 * 185.31149 * 13 11 10 15 15 C 1.38856 * 120.05538 * 33.44083 * 14 13 11 16 16 C 1.38111 * 119.94301 * 180.23457 * 15 14 13 17 17 C 1.38382 * 120.05275 * 359.49010 * 16 15 14 18 18 Cl 1.73603 * 119.94385 * 180.25482 * 17 16 15 19 19 C 1.38380 * 120.11907 * 0.24002 * 17 16 15 20 20 C 1.38117 * 120.05140 * 0.02562 * 19 17 16 21 21 H 0.97006 * 119.99921 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47034 * 59.99393 * 9 7 2 23 23 H 1.09005 * 109.46614 * 299.99595 * 9 7 2 24 24 H 0.96997 * 119.99820 * 5.30984 * 13 11 10 25 25 H 1.08002 * 120.03153 * 359.97438 * 15 14 13 26 26 H 1.07991 * 119.97457 * 179.77111 * 16 15 14 27 27 H 1.07997 * 119.97676 * 180.02562 * 19 17 16 28 28 H 1.08003 * 120.02539 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 2.1945 -3.6028 0.0005 11 6 1.6798 -4.8471 0.0011 12 8 0.4752 -5.0063 0.0020 13 7 2.5008 -5.9159 0.0006 14 6 1.9697 -7.2065 -0.1111 15 6 0.8289 -7.4257 -0.8719 16 6 0.3042 -8.6989 -0.9765 17 6 0.9204 -9.7575 -0.3326 18 17 0.2622 -11.3579 -0.4714 19 6 2.0606 -9.5428 0.4216 20 6 2.5861 -8.2704 0.5339 21 1 -0.4850 0.8401 0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8904 24 1 3.4596 -5.7910 0.0776 25 1 0.3500 -6.6005 -1.3779 26 1 -0.5851 -8.8693 -1.5650 27 1 2.5399 -10.3706 0.9229 28 1 3.4763 -8.1034 1.1223 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526915817.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:07 Heat of formation + Delta-G solvation = -66.759709 kcal Electronic energy + Delta-G solvation = -15603.242332 eV Core-core repulsion = 12645.079755 eV Total energy + Delta-G solvation = -2958.162576 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.48608 -38.89396 -36.75056 -35.81116 -34.47853 -32.94221 -31.18114 -29.50522 -27.69783 -23.73971 -23.07729 -22.28441 -20.61511 -18.45930 -17.68640 -16.81288 -16.24490 -15.94115 -15.56569 -14.98631 -14.48900 -14.26302 -13.66952 -13.61159 -12.92467 -12.66781 -12.37587 -11.89020 -11.82025 -11.58512 -11.10531 -11.04932 -10.96343 -10.34973 -10.19667 -9.98102 -9.79438 -9.40829 -9.14285 -8.59461 -8.09804 -6.28520 -4.34583 1.00550 1.19419 2.03783 2.61589 3.16988 3.20136 3.26852 3.32525 3.66997 4.22360 4.63558 4.75260 4.83944 5.07975 5.13550 5.29691 5.44551 5.80911 5.88439 6.14728 6.20751 6.34068 6.67989 6.83413 7.15032 7.29949 7.52419 7.76024 7.96340 8.65159 8.87317 9.30431 10.81991 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.074105 B = 0.003487 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.753654 B = 8028.542678 C = 8324.492125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.917 3.083 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.531 4.531 8 H 0.073 0.927 9 C 0.221 3.779 10 O -0.364 6.364 11 C 0.641 3.359 12 O -0.559 6.559 13 N -0.662 5.662 14 C 0.183 3.817 15 C -0.111 4.111 16 C -0.087 4.087 17 C -0.058 4.058 18 Cl -0.079 7.079 19 C -0.089 4.089 20 C -0.139 4.139 21 H 0.268 0.732 22 H 0.032 0.968 23 H 0.032 0.968 24 H 0.416 0.584 25 H 0.148 0.852 26 H 0.136 0.864 27 H 0.136 0.864 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.862 -18.307 -0.630 18.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.743 3.257 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.569 4.569 8 H 0.091 0.909 9 C 0.150 3.850 10 O -0.277 6.277 11 C 0.396 3.604 12 O -0.448 6.448 13 N -0.314 5.314 14 C 0.088 3.912 15 C -0.132 4.132 16 C -0.106 4.106 17 C -0.086 4.086 18 Cl -0.051 7.051 19 C -0.109 4.109 20 C -0.160 4.160 21 H 0.078 0.922 22 H 0.050 0.950 23 H 0.050 0.950 24 H 0.253 0.747 25 H 0.166 0.834 26 H 0.154 0.846 27 H 0.154 0.846 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.037 -18.164 -0.653 18.619 hybrid contribution 0.573 0.852 0.084 1.030 sum 4.610 -17.313 -0.568 17.925 Atomic orbital electron populations 1.69991 1.06141 1.27669 1.48867 1.24960 0.95083 0.99539 0.94633 0.86145 0.79817 0.81877 0.77843 1.19347 1.20599 1.20606 1.21023 0.94360 0.88470 1.53074 0.90923 1.21008 0.87025 0.78590 0.98389 1.86314 1.44098 1.12934 1.84349 1.18371 0.84048 0.82216 0.75755 1.90966 1.13539 1.86267 1.54004 1.42140 1.10666 1.02339 1.76237 1.17612 0.95225 0.83097 0.95304 1.21275 0.96369 0.97248 0.98286 1.20934 0.99864 0.90793 0.99035 1.20851 0.97660 0.86157 1.03902 1.98353 1.85757 1.23728 1.97220 1.20757 0.94682 0.97035 0.98380 1.20800 1.02581 0.91436 1.01179 0.92211 0.95048 0.95034 0.74715 0.83429 0.84619 0.84645 0.84560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.94 13.29 55.43 0.74 -25.21 15 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 3 Si 0.92 20.89 29.54 -169.99 -5.02 15.87 15 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 7 C -0.53 -14.91 9.44 -34.44 -0.33 -15.24 15 8 H 0.07 1.97 7.81 -52.49 -0.41 1.56 15 9 C 0.22 6.00 5.23 36.01 0.19 6.19 15 10 O -0.36 -8.44 10.26 -40.38 -0.41 -8.85 15 11 C 0.64 13.11 8.49 54.06 0.46 13.57 15 12 O -0.56 -12.94 13.83 -19.28 -0.27 -13.21 15 13 N -0.66 -9.96 5.35 -14.26 -0.08 -10.03 15 14 C 0.18 2.52 6.28 -83.67 -0.53 2.00 15 15 C -0.11 -1.61 8.65 -39.40 -0.34 -1.95 15 16 C -0.09 -1.07 9.82 -39.57 -0.39 -1.46 15 17 C -0.06 -0.66 6.32 -39.48 -0.25 -0.91 15 18 Cl -0.08 -0.81 28.95 -51.86 -1.50 -2.31 15 19 C -0.09 -0.91 9.82 -39.57 -0.39 -1.30 15 20 C -0.14 -1.49 9.96 -39.40 -0.39 -1.89 15 21 H 0.27 7.27 8.31 -40.82 -0.34 6.93 15 22 H 0.03 0.90 8.14 -51.93 -0.42 0.48 15 23 H 0.03 0.91 8.14 -51.93 -0.42 0.49 15 24 H 0.42 4.91 8.92 -40.82 -0.36 4.54 15 25 H 0.15 2.43 6.42 -52.49 -0.34 2.09 15 26 H 0.14 1.44 8.06 -52.49 -0.42 1.02 15 27 H 0.14 1.05 8.06 -52.49 -0.42 0.63 15 28 H 0.14 1.11 8.06 -52.48 -0.42 0.68 15 LS Contribution 273.92 15.07 4.13 4.13 Total: -1.00 -31.08 273.92 -6.84 -37.91 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -2.36 Total: 1.09 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -2.06 Total: 0.61 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.66 Total: -35.24 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.68 Total: -22.06 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.08 -6.84 -37.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526915817.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.847 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds