Wall clock time and date at job start Mon Mar 30 2020 06:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00068 * 2 1 4 4 H 1.48495 * 109.46928 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47281 * 300.00140 * 3 2 1 6 6 H 1.48504 * 109.47001 * 60.00156 * 3 2 1 7 7 C 1.37874 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00365 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00039 * 0.02562 * 7 2 1 10 10 O 1.45194 * 109.47223 * 179.97438 * 9 7 2 11 11 C 1.34659 * 116.99701 * 179.97438 * 10 9 7 12 12 O 1.21506 * 120.00293 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99657 * 179.97438 * 11 10 9 14 14 C 1.40003 * 119.99915 * 185.31149 * 13 11 10 15 15 C 1.38856 * 120.05538 * 33.44083 * 14 13 11 16 16 C 1.38111 * 119.94301 * 180.23457 * 15 14 13 17 17 C 1.38382 * 120.05275 * 359.49010 * 16 15 14 18 18 Cl 1.73603 * 119.94385 * 180.25482 * 17 16 15 19 19 C 1.38380 * 120.11907 * 0.24002 * 17 16 15 20 20 C 1.38117 * 120.05140 * 0.02562 * 19 17 16 21 21 H 0.97006 * 119.99921 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47034 * 59.99393 * 9 7 2 23 23 H 1.09005 * 109.46614 * 299.99595 * 9 7 2 24 24 H 0.96997 * 119.99820 * 5.30984 * 13 11 10 25 25 H 1.08002 * 120.03153 * 359.97438 * 15 14 13 26 26 H 1.07991 * 119.97457 * 179.77111 * 16 15 14 27 27 H 1.07997 * 119.97676 * 180.02562 * 19 17 16 28 28 H 1.08003 * 120.02539 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 2.1945 -3.6028 0.0005 11 6 1.6798 -4.8471 0.0011 12 8 0.4752 -5.0063 0.0020 13 7 2.5008 -5.9159 0.0006 14 6 1.9697 -7.2065 -0.1111 15 6 0.8289 -7.4257 -0.8719 16 6 0.3042 -8.6989 -0.9765 17 6 0.9204 -9.7575 -0.3326 18 17 0.2622 -11.3579 -0.4714 19 6 2.0606 -9.5428 0.4216 20 6 2.5861 -8.2704 0.5339 21 1 -0.4850 0.8401 0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8904 24 1 3.4596 -5.7910 0.0776 25 1 0.3500 -6.6005 -1.3779 26 1 -0.5851 -8.8693 -1.5650 27 1 2.5399 -10.3706 0.9229 28 1 3.4763 -8.1034 1.1223 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526915817.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:06 Heat of formation + Delta-G solvation = -87.047997 kcal Electronic energy + Delta-G solvation = -15604.122098 eV Core-core repulsion = 12645.079755 eV Total energy + Delta-G solvation = -2959.042343 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.92330 -40.16755 -37.93971 -37.24989 -35.86519 -35.05694 -32.13013 -30.79589 -29.63311 -25.47610 -24.23385 -23.67829 -22.06704 -20.00560 -19.09712 -18.32175 -17.87691 -17.51425 -17.17440 -16.43930 -16.06623 -15.27707 -14.89521 -14.73294 -14.51840 -14.28596 -13.81816 -13.36933 -13.10533 -13.01255 -12.82261 -12.53429 -12.21065 -11.92462 -11.82002 -11.68674 -11.49266 -11.25427 -10.72146 -10.09035 -9.18823 -8.40986 -6.58113 -0.02107 0.25530 1.05158 1.20919 1.43179 1.43890 1.59749 1.62262 2.33431 2.61939 2.94038 3.24529 3.77621 3.87775 4.19082 4.29251 4.39769 4.60389 4.82986 4.88910 4.95970 5.16072 5.20552 5.24268 5.34678 5.65177 5.74462 5.85640 6.20871 6.54845 7.09590 7.23060 8.71523 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.074105 B = 0.003487 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.753654 B = 8028.542678 C = 8324.492125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.998 3.002 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.556 4.556 8 H 0.080 0.920 9 C 0.237 3.763 10 O -0.366 6.366 11 C 0.637 3.363 12 O -0.593 6.593 13 N -0.637 5.637 14 C 0.153 3.847 15 C -0.133 4.133 16 C -0.092 4.092 17 C -0.057 4.057 18 Cl -0.066 7.066 19 C -0.081 4.081 20 C -0.120 4.120 21 H 0.275 0.725 22 H 0.004 0.996 23 H 0.004 0.996 24 H 0.433 0.567 25 H 0.117 0.883 26 H 0.145 0.855 27 H 0.170 0.830 28 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.899 -19.310 0.022 20.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.180 1.180 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.593 4.593 8 H 0.098 0.902 9 C 0.165 3.835 10 O -0.279 6.279 11 C 0.391 3.609 12 O -0.483 6.483 13 N -0.291 5.291 14 C 0.059 3.941 15 C -0.154 4.154 16 C -0.112 4.112 17 C -0.085 4.085 18 Cl -0.037 7.037 19 C -0.100 4.100 20 C -0.140 4.140 21 H 0.084 0.916 22 H 0.022 0.978 23 H 0.022 0.978 24 H 0.273 0.727 25 H 0.135 0.865 26 H 0.162 0.838 27 H 0.187 0.813 28 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 6.107 -19.237 -0.003 20.183 hybrid contribution -0.108 0.923 -0.128 0.939 sum 5.999 -18.313 -0.132 19.272 Atomic orbital electron populations 1.70119 1.08122 1.29212 1.49181 1.26107 0.96019 1.03747 0.93344 0.84923 0.78741 0.76174 0.78238 1.17967 1.19713 1.19700 1.21361 0.94837 0.89124 1.54025 0.90184 1.20508 0.87106 0.80202 0.95711 1.86262 1.42896 1.13643 1.85074 1.18610 0.84305 0.82227 0.75712 1.90945 1.15242 1.86517 1.55645 1.41904 1.10899 1.01410 1.74839 1.17893 0.96108 0.82932 0.97150 1.21143 0.97330 0.97417 0.99512 1.20996 1.00329 0.90340 0.99497 1.21018 0.97799 0.86417 1.03244 1.98364 1.85677 1.22518 1.97137 1.21170 0.93849 0.97688 0.97326 1.21123 1.02800 0.90338 0.99722 0.91635 0.97815 0.97839 0.72688 0.86523 0.83750 0.81284 0.81133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.31 13.29 21.45 0.28 -55.03 15 2 C 0.01 0.41 5.46 84.65 0.46 0.87 15 3 Si 1.00 42.46 29.54 68.60 2.03 44.49 15 4 H -0.26 -10.28 7.11 99.48 0.71 -9.57 15 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 15 6 H -0.27 -11.15 7.11 99.48 0.71 -10.44 15 7 C -0.56 -31.81 9.44 25.60 0.24 -31.56 15 8 H 0.08 4.35 7.81 -2.91 -0.02 4.33 15 9 C 0.24 13.51 5.23 71.24 0.37 13.88 15 10 O -0.37 -17.53 10.26 -55.68 -0.57 -18.11 15 11 C 0.64 26.97 8.49 129.79 1.10 28.07 15 12 O -0.59 -29.02 13.83 19.82 0.27 -28.75 15 13 N -0.64 -18.97 5.35 -429.42 -2.30 -21.26 15 14 C 0.15 4.10 6.28 38.13 0.24 4.34 15 15 C -0.13 -3.97 8.65 22.39 0.19 -3.78 15 16 C -0.09 -2.23 9.82 22.27 0.22 -2.02 15 17 C -0.06 -1.17 6.32 22.34 0.14 -1.03 15 18 Cl -0.07 -1.19 28.95 -2.72 -0.08 -1.27 15 19 C -0.08 -1.37 9.82 22.27 0.22 -1.15 15 20 C -0.12 -2.20 9.96 22.39 0.22 -1.98 15 21 H 0.27 15.06 8.31 -92.70 -0.77 14.29 15 22 H 0.00 0.24 8.14 -2.39 -0.02 0.22 15 23 H 0.00 0.22 8.14 -2.38 -0.02 0.20 15 24 H 0.43 9.62 8.92 -92.71 -0.83 8.79 15 25 H 0.12 4.18 6.42 -2.91 -0.02 4.16 15 26 H 0.14 3.08 8.06 -2.92 -0.02 3.06 15 27 H 0.17 1.77 8.06 -2.91 -0.02 1.74 15 28 H 0.17 1.97 8.06 -2.91 -0.02 1.95 15 Total: -1.00 -69.43 273.92 3.42 -66.01 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 0.37 Total: 8.27 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 3.41 Total: 5.65 kcal Atomic # 7 Polarization: -74.28 SS G_CDS: -2.01 Total: -76.29 kcal Atomic # 8 Polarization: -46.56 SS G_CDS: -0.30 Total: -46.86 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.27 kcal Total: -69.43 3.42 -66.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526915817.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.039 kcal (2) G-P(sol) polarization free energy of solvation -69.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds