Wall clock time and date at job start Mon Mar 30 2020 06:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40183 * 119.94828 * 2 1 4 4 C 1.43192 * 119.90900 * 0.02562 * 3 2 1 5 5 N 3.48556 * 80.25899 * 0.02562 * 2 1 3 6 6 C 1.40136 * 120.18592 * 180.27582 * 3 2 1 7 7 C 1.36241 * 120.09841 * 359.44861 * 6 3 2 8 8 C 1.40934 * 119.90209 * 0.27947 * 7 6 3 9 9 C 1.40996 * 120.09324 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00123 * 212.39595 * 9 8 7 11 11 C 1.40189 * 120.00301 * 32.39674 * 9 8 7 12 12 N 1.30679 * 119.99810 * 10.34918 * 11 9 8 13 13 Si 1.86798 * 120.00123 * 190.35259 * 11 9 8 14 14 H 1.48500 * 109.47289 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47217 * 119.99627 * 13 11 9 16 16 H 1.48499 * 109.47087 * 239.99666 * 13 11 9 17 17 C 1.36210 * 119.95478 * 179.72721 * 2 1 3 18 18 C 1.50704 * 120.04445 * 359.97438 * 17 2 1 19 19 F 1.39897 * 109.46464 * 206.40179 * 18 17 2 20 20 F 1.39891 * 109.47085 * 326.40533 * 18 17 2 21 21 F 1.39901 * 109.46750 * 86.40908 * 18 17 2 22 22 H 1.09000 * 109.47151 * 270.27503 * 1 2 3 23 23 H 1.09004 * 109.47247 * 30.27264 * 1 2 3 24 24 H 1.09004 * 109.46957 * 150.27287 * 1 2 3 25 25 H 1.07994 * 119.95011 * 179.72631 * 6 3 2 26 26 H 1.08001 * 120.04779 * 180.29718 * 7 6 3 27 27 H 0.96999 * 119.99476 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.2146 0.0000 4 6 1.4877 2.4529 0.0006 5 7 0.9172 3.4353 0.0015 6 6 3.6081 1.2205 -0.0058 7 6 4.2963 0.0446 -0.0002 8 6 3.5967 -1.1788 0.0056 9 6 4.3048 -2.3980 0.0120 10 1 3.8934 -3.2641 -0.4850 11 6 5.5430 -2.4862 0.6635 12 7 5.9479 -1.5098 1.4319 13 14 6.6141 -3.9992 0.4331 14 1 5.9338 -4.9530 -0.4795 15 1 7.9180 -3.5980 -0.1537 16 1 6.8423 -4.6491 1.7486 17 6 2.1871 -1.1801 0.0056 18 6 1.4336 -2.4852 0.0124 19 9 2.2239 -3.4768 0.6036 20 9 0.2493 -2.3361 0.7419 21 9 1.1284 -2.8543 -1.3021 22 1 -0.3633 0.0049 1.0276 23 1 -0.3634 0.8876 -0.5181 24 1 -0.3633 -0.8925 -0.5096 25 1 4.1434 2.1584 -0.0103 26 1 5.3763 0.0501 0.0002 27 1 6.8048 -1.5707 1.8823 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575645060.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:41 Heat of formation + Delta-G solvation = -121.735651 kcal Electronic energy + Delta-G solvation = -18815.133431 eV Core-core repulsion = 15315.163028 eV Total energy + Delta-G solvation = -3499.970403 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.87406 -48.39021 -48.25388 -40.16823 -37.35352 -35.87799 -33.50797 -32.60868 -28.72898 -27.87711 -25.90029 -23.48898 -22.27625 -19.83726 -19.32544 -19.09035 -18.99965 -17.26506 -17.19597 -16.21528 -15.64140 -15.39874 -15.14623 -14.93286 -14.80229 -14.58154 -14.49239 -14.47427 -14.21869 -13.88915 -13.66854 -13.48638 -13.27015 -13.14360 -12.85711 -12.64252 -12.32129 -12.14391 -11.74084 -11.42164 -11.16809 -9.76869 -9.35885 -8.85010 -6.61824 0.29364 0.70359 1.42300 1.44528 1.58056 1.87540 2.12256 2.14012 2.18827 2.77465 3.21732 3.33753 3.41812 3.64649 3.89297 4.01721 4.25290 4.56717 4.70248 4.89502 4.97367 5.04661 5.14533 5.40660 5.50151 5.77512 5.85248 5.99691 6.38202 6.61033 6.62484 6.80796 8.10412 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.021438 B = 0.009655 C = 0.007069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.795607 B = 2899.345076 C = 3959.805863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.050 3.950 3 C -0.190 4.190 4 C 0.302 3.698 5 N -0.508 5.508 6 C -0.032 4.032 7 C -0.170 4.170 8 C 0.136 3.864 9 C -0.442 4.442 10 H 0.095 0.905 11 C 0.042 3.958 12 N -0.788 5.788 13 Si 0.981 3.019 14 H -0.257 1.257 15 H -0.257 1.257 16 H -0.265 1.265 17 C -0.319 4.319 18 C 0.524 3.476 19 F -0.176 7.176 20 F -0.185 7.185 21 F -0.193 7.193 22 H 0.085 0.915 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.127 0.873 26 H 0.124 0.876 27 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.458 -4.302 -1.260 4.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.047 3.953 3 C -0.196 4.196 4 C -0.008 4.008 5 N -0.187 5.187 6 C -0.052 4.052 7 C -0.189 4.189 8 C 0.131 3.869 9 C -0.468 4.468 10 H 0.112 0.888 11 C -0.179 4.179 12 N -0.411 5.411 13 Si 0.801 3.199 14 H -0.181 1.181 15 H -0.182 1.182 16 H -0.190 1.190 17 C -0.322 4.322 18 C 0.470 3.530 19 F -0.157 7.157 20 F -0.167 7.167 21 F -0.175 7.175 22 H 0.104 0.896 23 H 0.083 0.917 24 H 0.096 0.904 25 H 0.144 0.856 26 H 0.141 0.859 27 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.172 -2.730 -1.088 3.164 hybrid contribution 0.628 -1.054 0.113 1.232 sum -0.545 -3.783 -0.975 3.945 Atomic orbital electron populations 1.21167 0.90453 1.02986 1.03423 1.19054 0.95555 0.90702 0.89985 1.15292 0.92036 0.85106 1.27126 1.25756 0.91810 0.92307 0.90914 1.81111 1.10266 1.12056 1.15275 1.20669 0.91462 0.98407 0.94671 1.20884 0.99809 0.90802 1.07418 1.17670 0.89490 0.94750 0.84959 1.20383 1.02174 0.97232 1.27019 0.88750 1.26820 0.97906 1.00999 0.92174 1.69712 1.20490 1.32688 1.18162 0.85135 0.77921 0.77283 0.79581 1.18055 1.18154 1.18994 1.19310 0.94638 0.90399 1.27832 1.18121 0.76375 0.85578 0.72916 1.93154 1.73823 1.64556 1.84150 1.93089 1.49593 1.95815 1.78193 1.93133 1.93569 1.93019 1.37782 0.89636 0.91735 0.90405 0.85552 0.85864 0.88755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.15 7.99 71.24 0.57 -3.58 15 2 C 0.05 1.98 5.85 -19.86 -0.12 1.87 15 3 C -0.19 -7.52 5.76 -21.10 -0.12 -7.64 15 4 C 0.30 11.76 13.77 88.33 1.22 12.98 15 5 N -0.51 -20.50 18.54 19.00 0.35 -20.15 15 6 C -0.03 -1.24 9.69 22.27 0.22 -1.03 15 7 C -0.17 -7.37 8.57 22.46 0.19 -7.18 15 8 C 0.14 6.19 5.49 -21.28 -0.12 6.07 15 9 C -0.44 -19.97 7.10 23.42 0.17 -19.81 15 10 H 0.09 4.24 6.30 -2.91 -0.02 4.22 15 11 C 0.04 1.76 5.23 85.34 0.45 2.20 15 12 N -0.79 -34.12 11.06 21.87 0.24 -33.88 15 13 Si 0.98 32.39 29.57 68.60 2.03 34.42 15 14 H -0.26 -8.54 7.11 99.48 0.71 -7.83 15 15 H -0.26 -8.04 7.11 99.48 0.71 -7.33 15 16 H -0.27 -8.58 7.11 99.48 0.71 -7.87 15 17 C -0.32 -13.62 5.47 -19.67 -0.11 -13.72 15 18 C 0.52 20.92 2.60 71.24 0.18 21.10 15 19 F -0.18 -7.37 13.77 44.97 0.62 -6.75 15 20 F -0.19 -6.77 13.99 44.97 0.63 -6.15 15 21 F -0.19 -7.45 17.19 44.97 0.77 -6.68 15 22 H 0.09 2.70 8.02 -2.39 -0.02 2.68 15 23 H 0.06 2.07 7.09 -2.38 -0.02 2.06 15 24 H 0.08 2.49 6.04 -2.38 -0.01 2.48 15 25 H 0.13 4.33 8.06 -2.91 -0.02 4.31 15 26 H 0.12 5.42 6.48 -2.91 -0.02 5.40 15 27 H 0.30 11.58 8.29 -92.71 -0.77 10.81 15 Total: -1.00 -47.42 253.24 8.42 -39.00 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 1.24 Total: 8.92 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 2.53 Total: -8.73 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.59 Total: -54.03 kcal Atomic # 9 Polarization: -21.60 SS G_CDS: 2.02 Total: -19.58 kcal Atomic # 14 Polarization: 32.39 SS G_CDS: 2.03 Total: 34.42 kcal Total: -47.42 8.42 -39.00 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575645060.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.732 kcal (2) G-P(sol) polarization free energy of solvation -47.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds