Wall clock time and date at job start Mon Mar 30 2020 06:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39987 * 119.81981 * 2 1 4 4 C 1.43195 * 120.03505 * 359.97438 * 3 2 1 5 5 N 3.48608 * 80.19685 * 359.97438 * 2 1 3 6 6 C 1.39049 * 119.93303 * 180.25869 * 3 2 1 7 7 C 1.40499 * 119.59334 * 359.44841 * 6 3 2 8 8 C 1.41439 * 120.17930 * 180.28141 * 7 6 3 9 9 H 1.08004 * 119.99395 * 330.39014 * 8 7 6 10 10 C 1.39937 * 120.00324 * 150.39397 * 8 7 6 11 11 N 1.30821 * 119.99863 * 161.76205 * 10 8 7 12 12 Si 1.86796 * 119.99795 * 341.76554 * 10 8 7 13 13 H 1.48504 * 109.47183 * 95.41953 * 12 10 8 14 14 H 1.48500 * 109.46740 * 215.41523 * 12 10 8 15 15 H 1.48496 * 109.47462 * 335.41495 * 12 10 8 16 16 C 1.40764 * 119.65043 * 0.54333 * 7 6 3 17 17 C 1.37760 * 120.04827 * 359.73322 * 16 7 6 18 18 C 1.50700 * 119.78983 * 180.02562 * 17 16 7 19 19 F 1.39906 * 109.47331 * 359.97438 * 18 17 16 20 20 F 1.39900 * 109.47217 * 119.97822 * 18 17 16 21 21 F 1.39905 * 109.47272 * 239.97695 * 18 17 16 22 22 H 1.08999 * 109.47225 * 90.00578 * 1 2 3 23 23 H 1.09011 * 109.46858 * 210.00305 * 1 2 3 24 24 H 1.08997 * 109.47241 * 329.99635 * 1 2 3 25 25 H 1.08001 * 120.20247 * 179.69619 * 6 3 2 26 26 H 0.96996 * 119.99770 * 179.97438 * 11 10 8 27 27 H 1.07996 * 119.97488 * 179.70141 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2031 1.2145 0.0000 4 6 1.4840 2.4528 -0.0006 5 7 0.9134 3.4352 -0.0015 6 6 3.5936 1.2173 -0.0054 7 6 4.2899 -0.0030 0.0009 8 6 5.7042 -0.0147 0.0014 9 1 6.2510 0.7918 -0.4645 10 6 6.3951 -1.0710 0.6056 11 7 7.6524 -1.2827 0.3128 12 14 5.5218 -2.1790 1.8300 13 1 5.0172 -3.3882 1.1312 14 1 6.4725 -2.5841 2.8965 15 1 4.3817 -1.4454 2.4359 16 6 3.5725 -1.2141 0.0010 17 6 2.1949 -1.1999 0.0005 18 6 1.4327 -2.4999 0.0013 19 9 2.3347 -3.5694 0.0018 20 9 0.6280 -2.5681 1.1436 21 9 0.6279 -2.5693 -1.1410 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3633 -0.8901 0.5139 24 1 -0.3633 0.8899 0.5139 25 1 4.1350 2.1517 -0.0104 26 1 8.1314 -2.0147 0.7319 27 1 4.1024 -2.1552 0.0009 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575645223.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:44 Heat of formation + Delta-G solvation = -115.742365 kcal Electronic energy + Delta-G solvation = -18632.773057 eV Core-core repulsion = 15133.062542 eV Total energy + Delta-G solvation = -3499.710514 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.77436 -47.27508 -47.19652 -38.85448 -36.05033 -34.28665 -32.20427 -31.32614 -28.32212 -25.50222 -24.29656 -22.82013 -20.67981 -19.07040 -18.15300 -18.07074 -16.74379 -16.17333 -15.59445 -15.00743 -14.55794 -14.31680 -14.01618 -13.74129 -13.60822 -13.42372 -13.37953 -13.18103 -12.88627 -12.58658 -12.31322 -12.22264 -11.97355 -11.82075 -11.67034 -11.17785 -10.88994 -10.66050 -10.28666 -10.07018 -9.48400 -8.43274 -8.00005 -7.27632 -4.84480 1.48982 1.85020 2.90934 3.01469 3.05646 3.08011 3.21831 3.42375 3.72655 4.14628 4.22593 4.44778 4.66519 4.77074 5.03449 5.46585 5.50480 5.93547 5.98387 6.13649 6.18695 6.37807 6.48376 6.79615 6.86755 7.01950 7.23409 7.40215 7.94154 7.94604 8.11151 8.38068 9.72765 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.017309 B = 0.011248 C = 0.007501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.269505 B = 2488.840523 C = 3732.007926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.130 4.130 3 C -0.001 4.001 4 C 0.278 3.722 5 N -0.453 5.453 6 C -0.126 4.126 7 C 0.081 3.919 8 C -0.429 4.429 9 H 0.102 0.898 10 C 0.085 3.915 11 N -0.786 5.786 12 Si 0.892 3.108 13 H -0.258 1.258 14 H -0.281 1.281 15 H -0.239 1.239 16 C -0.174 4.174 17 C -0.132 4.132 18 C 0.505 3.495 19 F -0.181 7.181 20 F -0.182 7.182 21 F -0.181 7.181 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.121 0.879 26 H 0.292 0.708 27 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.392 -3.824 0.898 7.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.134 4.134 3 C -0.004 4.004 4 C -0.036 4.036 5 N -0.129 5.129 6 C -0.148 4.148 7 C 0.078 3.922 8 C -0.455 4.455 9 H 0.119 0.881 10 C -0.137 4.137 11 N -0.408 5.408 12 Si 0.717 3.283 13 H -0.183 1.183 14 H -0.207 1.207 15 H -0.162 1.162 16 C -0.194 4.194 17 C -0.133 4.133 18 C 0.451 3.549 19 F -0.162 7.162 20 F -0.163 7.163 21 F -0.162 7.162 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.077 0.923 25 H 0.139 0.861 26 H 0.103 0.897 27 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.999 -2.442 0.900 7.467 hybrid contribution 0.016 -1.229 0.493 1.324 sum -6.983 -3.672 1.393 8.011 Atomic orbital electron populations 1.20825 0.91840 1.02561 1.01915 1.18641 0.94480 0.90152 1.10139 1.15526 0.92092 0.85201 1.07589 1.25932 0.92349 0.92727 0.92573 1.81134 1.09750 1.11553 1.10512 1.21301 0.90555 0.98432 1.04557 1.17464 0.93811 0.89754 0.91215 1.19549 0.89332 1.06623 1.30045 0.88061 1.26189 0.94921 0.96289 0.96351 1.69652 1.10416 1.26520 1.34182 0.86556 0.80579 0.80825 0.80351 1.18334 1.20748 1.16189 1.21091 0.91391 0.99206 1.07701 1.19175 0.94302 0.89853 1.10009 1.18576 0.77358 0.85590 0.73342 1.93149 1.67534 1.59296 1.96219 1.93123 1.74887 1.96705 1.51587 1.93169 1.74895 1.96852 1.51331 0.91727 0.91518 0.92338 0.86060 0.89721 0.86009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.82 8.55 36.01 0.31 -1.52 15 2 C -0.13 -2.41 5.90 -103.94 -0.61 -3.02 15 3 C 0.00 -0.01 5.72 -107.02 -0.61 -0.62 15 4 C 0.28 5.08 13.76 -22.47 -0.31 4.77 15 5 N -0.45 -8.59 18.54 41.84 0.78 -7.81 15 6 C -0.13 -2.48 9.50 -38.43 -0.36 -2.84 15 7 C 0.08 1.75 5.10 -106.87 -0.55 1.20 15 8 C -0.43 -9.95 9.57 -37.73 -0.36 -10.31 15 9 H 0.10 2.43 8.06 -52.48 -0.42 2.01 15 10 C 0.08 1.96 5.40 -17.35 -0.09 1.86 15 11 N -0.79 -18.62 13.93 55.55 0.77 -17.85 15 12 Si 0.89 18.30 24.52 -169.99 -4.17 14.14 15 13 H -0.26 -5.20 6.71 56.52 0.38 -4.82 15 14 H -0.28 -5.58 7.11 56.52 0.40 -5.18 15 15 H -0.24 -4.97 6.86 56.52 0.39 -4.58 15 16 C -0.17 -3.66 6.55 -38.80 -0.25 -3.92 15 17 C -0.13 -2.56 5.36 -104.77 -0.56 -3.12 15 18 C 0.51 9.02 2.80 36.01 0.10 9.12 15 19 F -0.18 -3.32 15.94 2.25 0.04 -3.28 15 20 F -0.18 -3.09 15.30 2.25 0.03 -3.05 15 21 F -0.18 -3.05 16.40 2.25 0.04 -3.01 15 22 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 23 H 0.07 1.02 5.47 -51.92 -0.28 0.73 15 24 H 0.06 0.90 7.07 -51.93 -0.37 0.53 15 25 H 0.12 2.20 8.06 -52.49 -0.42 1.77 15 26 H 0.29 6.25 8.30 -40.82 -0.34 5.91 15 27 H 0.12 2.60 3.80 -52.49 -0.20 2.40 15 LS Contribution 252.40 15.07 3.80 3.80 Total: -1.00 -22.85 252.40 -3.30 -26.15 By element: Atomic # 1 Polarization: 0.60 SS G_CDS: -1.29 Total: -0.68 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -3.31 Total: -8.40 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 1.55 Total: -25.66 kcal Atomic # 9 Polarization: -9.46 SS G_CDS: 0.11 Total: -9.35 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -4.17 Total: 14.14 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -22.85 -3.30 -26.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575645223.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.593 kcal (2) G-P(sol) polarization free energy of solvation -22.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds