Wall clock time and date at job start Mon Mar 30 2020 06:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39987 * 119.81981 * 2 1 4 4 C 1.43195 * 120.03505 * 359.97438 * 3 2 1 5 5 N 3.48608 * 80.19685 * 359.97438 * 2 1 3 6 6 C 1.39049 * 119.93303 * 180.25869 * 3 2 1 7 7 C 1.40499 * 119.59334 * 359.44841 * 6 3 2 8 8 C 1.41439 * 120.17930 * 180.28141 * 7 6 3 9 9 H 1.08004 * 119.99395 * 330.39014 * 8 7 6 10 10 C 1.39937 * 120.00324 * 150.39397 * 8 7 6 11 11 N 1.30821 * 119.99863 * 161.76205 * 10 8 7 12 12 Si 1.86796 * 119.99795 * 341.76554 * 10 8 7 13 13 H 1.48504 * 109.47183 * 95.41953 * 12 10 8 14 14 H 1.48500 * 109.46740 * 215.41523 * 12 10 8 15 15 H 1.48496 * 109.47462 * 335.41495 * 12 10 8 16 16 C 1.40764 * 119.65043 * 0.54333 * 7 6 3 17 17 C 1.37760 * 120.04827 * 359.73322 * 16 7 6 18 18 C 1.50700 * 119.78983 * 180.02562 * 17 16 7 19 19 F 1.39906 * 109.47331 * 359.97438 * 18 17 16 20 20 F 1.39900 * 109.47217 * 119.97822 * 18 17 16 21 21 F 1.39905 * 109.47272 * 239.97695 * 18 17 16 22 22 H 1.08999 * 109.47225 * 90.00578 * 1 2 3 23 23 H 1.09011 * 109.46858 * 210.00305 * 1 2 3 24 24 H 1.08997 * 109.47241 * 329.99635 * 1 2 3 25 25 H 1.08001 * 120.20247 * 179.69619 * 6 3 2 26 26 H 0.96996 * 119.99770 * 179.97438 * 11 10 8 27 27 H 1.07996 * 119.97488 * 179.70141 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2031 1.2145 0.0000 4 6 1.4840 2.4528 -0.0006 5 7 0.9134 3.4352 -0.0015 6 6 3.5936 1.2173 -0.0054 7 6 4.2899 -0.0030 0.0009 8 6 5.7042 -0.0147 0.0014 9 1 6.2510 0.7918 -0.4645 10 6 6.3951 -1.0710 0.6056 11 7 7.6524 -1.2827 0.3128 12 14 5.5218 -2.1790 1.8300 13 1 5.0172 -3.3882 1.1312 14 1 6.4725 -2.5841 2.8965 15 1 4.3817 -1.4454 2.4359 16 6 3.5725 -1.2141 0.0010 17 6 2.1949 -1.1999 0.0005 18 6 1.4327 -2.4999 0.0013 19 9 2.3347 -3.5694 0.0018 20 9 0.6280 -2.5681 1.1436 21 9 0.6279 -2.5693 -1.1410 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3633 -0.8901 0.5139 24 1 -0.3633 0.8899 0.5139 25 1 4.1350 2.1517 -0.0104 26 1 8.1314 -2.0147 0.7319 27 1 4.1024 -2.1552 0.0009 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575645223.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:44 Heat of formation + Delta-G solvation = -125.816021 kcal Electronic energy + Delta-G solvation = -18633.209883 eV Core-core repulsion = 15133.062542 eV Total energy + Delta-G solvation = -3500.147341 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -51.18076 -48.69389 -48.57578 -40.44884 -37.58445 -35.92276 -33.80650 -32.89426 -29.83284 -27.02432 -25.88987 -24.35590 -22.21779 -20.69066 -19.59102 -19.46719 -18.32403 -17.75673 -17.19673 -16.56733 -16.13881 -15.71104 -15.41953 -15.17216 -15.06541 -14.83659 -14.82006 -14.74965 -14.41861 -13.99928 -13.86212 -13.78039 -13.48855 -13.23708 -13.19335 -12.80012 -12.45982 -12.23453 -11.86587 -11.70945 -11.14328 -10.01634 -9.61999 -8.97462 -6.58772 -0.10708 0.27364 1.27754 1.36762 1.45330 1.57266 1.75664 1.84308 2.07353 2.55675 2.73446 2.93259 3.17248 3.20878 3.52617 3.98277 4.06859 4.36529 4.62582 4.69429 4.73788 4.85566 4.97582 5.23799 5.28087 5.45404 5.59198 5.78689 6.18067 6.42157 6.45816 6.66556 8.08973 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.017309 B = 0.011248 C = 0.007501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.269505 B = 2488.840523 C = 3732.007926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.108 4.108 3 C -0.001 4.001 4 C 0.291 3.709 5 N -0.458 5.458 6 C -0.120 4.120 7 C 0.072 3.928 8 C -0.461 4.461 9 H 0.078 0.922 10 C 0.058 3.942 11 N -0.827 5.827 12 Si 0.929 3.071 13 H -0.253 1.253 14 H -0.272 1.272 15 H -0.243 1.243 16 C -0.180 4.180 17 C -0.144 4.144 18 C 0.512 3.488 19 F -0.184 7.184 20 F -0.174 7.174 21 F -0.172 7.172 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.133 0.867 26 H 0.298 0.702 27 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.743 -4.005 1.220 9.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.112 4.112 3 C -0.005 4.005 4 C -0.024 4.024 5 N -0.134 5.134 6 C -0.142 4.142 7 C 0.069 3.931 8 C -0.490 4.490 9 H 0.096 0.904 10 C -0.160 4.160 11 N -0.452 5.452 12 Si 0.752 3.248 13 H -0.178 1.178 14 H -0.198 1.198 15 H -0.166 1.166 16 C -0.200 4.200 17 C -0.145 4.145 18 C 0.458 3.542 19 F -0.165 7.165 20 F -0.155 7.155 21 F -0.154 7.154 22 H 0.100 0.900 23 H 0.095 0.905 24 H 0.085 0.915 25 H 0.150 0.850 26 H 0.109 0.891 27 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.360 -2.620 1.221 9.796 hybrid contribution 0.514 -1.068 0.338 1.233 sum -8.846 -3.688 1.559 9.710 Atomic orbital electron populations 1.20924 0.89487 1.03546 1.03320 1.19083 0.96182 0.89599 1.06363 1.15513 0.91687 0.85688 1.07571 1.25627 0.92068 0.92335 0.92329 1.81168 1.10020 1.11560 1.10638 1.21454 0.91159 0.98374 1.03203 1.17511 0.93321 0.90748 0.91527 1.19490 0.90200 1.06904 1.32376 0.90365 1.26658 0.95230 0.97022 0.97063 1.69675 1.11504 1.28002 1.36006 0.85998 0.79855 0.79782 0.79204 1.17780 1.19790 1.16584 1.21133 0.92245 0.98830 1.07744 1.19340 0.93917 0.91179 1.10091 1.18282 0.77331 0.84741 0.73828 1.93150 1.67794 1.59295 1.96261 1.93143 1.74539 1.96624 1.51197 1.93191 1.74517 1.96763 1.50886 0.89998 0.90497 0.91456 0.84956 0.89094 0.86485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.21 8.55 71.24 0.61 -2.60 15 2 C -0.11 -3.66 5.90 -19.42 -0.11 -3.78 15 3 C 0.00 -0.04 5.72 -21.42 -0.12 -0.16 15 4 C 0.29 9.75 13.76 88.33 1.22 10.97 15 5 N -0.46 -16.04 18.54 19.00 0.35 -15.69 15 6 C -0.12 -4.55 9.50 23.02 0.22 -4.33 15 7 C 0.07 3.08 5.10 -21.32 -0.11 2.97 15 8 C -0.46 -22.05 9.57 23.47 0.22 -21.82 15 9 H 0.08 3.96 8.06 -2.91 -0.02 3.94 15 10 C 0.06 2.75 5.40 85.26 0.46 3.21 15 11 N -0.83 -40.50 13.93 21.82 0.30 -40.19 15 12 Si 0.93 37.34 24.52 68.60 1.68 39.02 15 13 H -0.25 -9.83 6.71 99.48 0.67 -9.16 15 14 H -0.27 -10.40 7.11 99.48 0.71 -9.69 15 15 H -0.24 -9.75 6.86 99.48 0.68 -9.07 15 16 C -0.18 -7.34 6.55 22.77 0.15 -7.19 15 17 C -0.14 -5.23 5.36 -19.96 -0.11 -5.33 15 18 C 0.51 16.80 2.80 71.24 0.20 17.00 15 19 F -0.18 -6.33 15.94 44.97 0.72 -5.61 15 20 F -0.17 -5.32 15.30 44.97 0.69 -4.63 15 21 F -0.17 -5.23 16.40 44.97 0.74 -4.49 15 22 H 0.08 2.06 8.14 -2.39 -0.02 2.04 15 23 H 0.08 2.01 5.47 -2.38 -0.01 2.00 15 24 H 0.07 1.78 7.07 -2.39 -0.02 1.77 15 25 H 0.13 4.67 8.06 -2.91 -0.02 4.65 15 26 H 0.30 13.15 8.30 -92.71 -0.77 12.38 15 27 H 0.12 4.89 3.80 -2.91 -0.01 4.88 15 Total: -1.00 -47.22 252.40 8.29 -38.94 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: 1.18 Total: 3.74 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 2.62 Total: -11.07 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.66 Total: -55.88 kcal Atomic # 9 Polarization: -16.88 SS G_CDS: 2.14 Total: -14.74 kcal Atomic # 14 Polarization: 37.34 SS G_CDS: 1.68 Total: 39.02 kcal Total: -47.22 8.29 -38.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575645223.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.878 kcal (2) G-P(sol) polarization free energy of solvation -47.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds