Wall clock time and date at job start Mon Mar 30 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36237 * 119.95203 * 2 1 4 4 C 1.40936 * 119.90603 * 179.72222 * 3 2 1 5 5 C 1.40984 * 120.09805 * 179.97438 * 4 3 2 6 6 H 1.08008 * 120.00211 * 154.17958 * 5 4 3 7 7 C 1.40189 * 120.00337 * 334.17693 * 5 4 3 8 8 N 1.30678 * 119.99824 * 343.22584 * 7 5 4 9 9 Si 1.86796 * 120.00374 * 163.22760 * 7 5 4 10 10 H 1.48507 * 109.47207 * 90.00283 * 9 7 5 11 11 H 1.48505 * 109.47160 * 209.99743 * 9 7 5 12 12 H 1.48497 * 109.47142 * 330.00117 * 9 7 5 13 13 C 1.40978 * 119.80712 * 359.97438 * 4 3 2 14 14 C 1.50692 * 120.04586 * 180.02562 * 13 4 3 15 15 F 1.39903 * 109.47034 * 180.02562 * 14 13 4 16 16 F 1.39903 * 109.47467 * 299.99752 * 14 13 4 17 17 F 1.39896 * 109.47644 * 60.00431 * 14 13 4 18 18 C 1.36205 * 119.89928 * 0.02562 * 13 4 3 19 19 C 1.40137 * 119.95085 * 179.71732 * 2 1 3 20 20 C 1.43200 * 119.90316 * 0.28682 * 19 2 1 21 21 N 3.48521 * 80.25354 * 179.90165 * 2 1 3 22 22 H 1.08998 * 109.46722 * 90.00530 * 1 2 3 23 23 H 1.09001 * 109.47187 * 210.00105 * 1 2 3 24 24 H 1.09002 * 109.47238 * 330.00409 * 1 2 3 25 25 H 1.08007 * 120.05021 * 359.69561 * 3 2 1 26 26 H 0.96998 * 120.00365 * 179.97438 * 8 7 5 27 27 H 1.08005 * 119.94904 * 180.02562 * 18 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1872 1.1804 0.0000 4 6 3.5966 1.1793 0.0059 5 6 4.3045 2.3985 0.0054 6 1 5.3021 2.4439 0.4169 7 6 3.7138 3.5519 -0.5292 8 7 2.6707 3.4500 -1.3098 9 14 4.4176 5.2346 -0.1259 10 1 5.4467 5.5953 -1.1340 11 1 3.3290 6.2445 -0.1467 12 1 5.0366 5.2017 1.2235 13 6 4.2963 -0.0445 0.0124 14 6 5.8032 -0.0520 0.0193 15 9 6.2630 -1.3733 0.0243 16 9 6.2782 0.6021 -1.1226 17 9 6.2677 0.6080 1.1620 18 6 3.6083 -1.2200 0.0123 19 6 2.2067 -1.2142 0.0060 20 6 1.4875 -2.4525 0.0059 21 7 0.9170 -3.4349 0.0059 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6472 2.1158 -0.0050 26 1 2.2617 4.2481 -1.6795 27 1 4.1436 -2.1581 0.0177 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575645400.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:02 Heat of formation + Delta-G solvation = -125.038659 kcal Electronic energy + Delta-G solvation = -18538.229702 eV Core-core repulsion = 15038.116070 eV Total energy + Delta-G solvation = -3500.113632 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.21268 -46.79161 -46.58376 -38.51463 -35.70163 -34.20431 -32.48723 -30.30736 -27.50446 -26.34631 -23.86167 -22.19484 -20.31114 -18.33591 -17.85532 -17.50626 -17.41561 -15.74344 -15.21343 -14.54247 -14.21099 -13.62804 -13.56782 -13.40020 -13.18247 -13.11083 -12.84653 -12.84042 -12.64912 -12.36799 -12.04304 -11.95202 -11.64710 -11.52565 -11.38396 -11.27812 -10.97138 -10.67650 -10.20768 -9.91107 -9.58050 -8.00233 -7.87444 -7.33374 -4.97813 1.95034 2.37915 2.79801 2.84121 2.90751 3.52817 3.57887 3.71940 3.76161 4.37643 4.86745 4.97511 5.04096 5.25173 5.55181 5.67538 5.83245 6.00238 6.19656 6.40536 6.52949 6.69893 6.76190 7.03398 7.10314 7.36557 7.52052 7.66823 8.02515 8.22385 8.28123 8.46698 9.57048 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.017957 B = 0.010114 C = 0.006862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.894794 B = 2767.649513 C = 4079.668659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.009 4.009 3 C -0.158 4.158 4 C 0.156 3.844 5 C -0.419 4.419 6 H 0.097 0.903 7 C 0.075 3.925 8 N -0.751 5.751 9 Si 0.917 3.083 10 H -0.262 1.262 11 H -0.270 1.270 12 H -0.253 1.253 13 C -0.310 4.310 14 C 0.523 3.477 15 F -0.198 7.198 16 F -0.182 7.182 17 F -0.189 7.189 18 C 0.024 3.976 19 C -0.190 4.190 20 C 0.291 3.709 21 N -0.500 5.500 22 H 0.065 0.935 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.132 0.868 26 H 0.294 0.706 27 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.032 2.831 1.313 3.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.012 4.012 3 C -0.178 4.178 4 C 0.152 3.848 5 C -0.444 4.444 6 H 0.115 0.885 7 C -0.150 4.150 8 N -0.372 5.372 9 Si 0.740 3.260 10 H -0.187 1.187 11 H -0.194 1.194 12 H -0.176 1.176 13 C -0.313 4.313 14 C 0.469 3.531 15 F -0.180 7.180 16 F -0.163 7.163 17 F -0.170 7.170 18 C 0.003 3.997 19 C -0.195 4.195 20 C -0.020 4.020 21 N -0.179 5.179 22 H 0.084 0.916 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.150 0.850 26 H 0.105 0.895 27 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.010 1.452 1.151 2.110 hybrid contribution 0.782 1.121 -0.011 1.366 sum 1.791 2.572 1.140 3.335 Atomic orbital electron populations 1.20773 0.92785 1.01585 1.01711 1.19250 0.94309 0.91943 0.95710 1.20800 0.93267 0.96481 1.07206 1.17279 0.92214 0.90502 0.84808 1.20141 1.02306 0.92316 1.29680 0.88526 1.26177 0.93938 1.02563 0.92290 1.69720 1.16223 1.33389 1.17903 0.86110 0.79856 0.79054 0.80998 1.18679 1.19428 1.17627 1.19201 0.88863 0.95778 1.27418 1.18218 0.89740 0.71892 0.73254 1.93056 1.91004 1.37525 1.96421 1.93154 1.90260 1.81523 1.51398 1.93113 1.90772 1.81264 1.51849 1.20035 0.92159 0.96327 0.91183 1.15168 0.90909 0.85907 1.27550 1.25916 0.92298 0.92476 0.91264 1.81091 1.10029 1.11705 1.15046 0.91638 0.92853 0.91722 0.85021 0.89469 0.86987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.91 9.60 36.01 0.35 -1.57 15 2 C -0.01 -0.19 5.87 -104.63 -0.61 -0.81 15 3 C -0.16 -3.45 8.25 -39.28 -0.32 -3.77 15 4 C 0.16 3.56 5.55 -106.80 -0.59 2.97 15 5 C -0.42 -9.43 7.80 -37.81 -0.29 -9.72 15 6 H 0.10 2.15 6.03 -52.48 -0.32 1.84 15 7 C 0.08 1.58 5.15 -17.31 -0.09 1.49 15 8 N -0.75 -16.07 10.96 55.56 0.61 -15.46 15 9 Si 0.92 15.84 29.59 -169.99 -5.03 10.81 15 10 H -0.26 -4.55 7.11 56.52 0.40 -4.15 15 11 H -0.27 -4.50 7.11 56.52 0.40 -4.09 15 12 H -0.25 -4.39 7.11 56.52 0.40 -3.99 15 13 C -0.31 -6.71 5.38 -104.32 -0.56 -7.27 15 14 C 0.52 10.72 2.82 36.00 0.10 10.82 15 15 F -0.20 -3.79 15.95 2.25 0.04 -3.75 15 16 F -0.18 -3.84 16.48 2.25 0.04 -3.81 15 17 F -0.19 -3.83 15.67 2.25 0.04 -3.80 15 18 C 0.02 0.49 9.08 -39.59 -0.36 0.13 15 19 C -0.19 -3.89 5.76 -106.53 -0.61 -4.51 15 20 C 0.29 5.94 13.76 -22.47 -0.31 5.63 15 21 N -0.50 -10.60 18.54 41.84 0.78 -9.82 15 22 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 23 H 0.05 0.90 7.07 -51.93 -0.37 0.53 15 24 H 0.06 1.00 8.08 -51.93 -0.42 0.58 15 25 H 0.13 2.87 6.20 -52.48 -0.33 2.55 15 26 H 0.29 5.60 8.29 -40.82 -0.34 5.26 15 27 H 0.11 2.10 7.11 -52.48 -0.37 1.72 15 LS Contribution 258.47 15.07 3.90 3.90 Total: -1.00 -23.32 258.47 -4.31 -27.63 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -1.36 Total: 0.89 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -3.31 Total: -6.59 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 1.38 Total: -25.28 kcal Atomic # 9 Polarization: -11.46 SS G_CDS: 0.11 Total: -11.35 kcal Atomic # 14 Polarization: 15.84 SS G_CDS: -5.03 Total: 10.81 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -23.32 -4.31 -27.63 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575645400.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.406 kcal (2) G-P(sol) polarization free energy of solvation -23.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds