Wall clock time and date at job start Mon Mar 30 2020 06:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39080 * 120.20553 * 2 1 4 4 C 1.43200 * 120.02930 * 359.97438 * 3 2 1 5 5 N 3.47908 * 80.48557 * 359.97438 * 2 1 3 6 6 C 1.39949 * 119.93585 * 179.69975 * 3 2 1 7 7 C 1.38357 * 120.34830 * 0.26090 * 6 3 2 8 8 C 1.50704 * 119.78738 * 179.97438 * 7 6 3 9 9 F 1.39905 * 109.47250 * 0.02562 * 8 7 6 10 10 F 1.39901 * 109.47040 * 119.99682 * 8 7 6 11 11 F 1.39892 * 109.47152 * 239.99732 * 8 7 6 12 12 C 1.37710 * 120.42073 * 0.02562 * 7 6 3 13 13 C 1.40474 * 120.20490 * 180.25254 * 2 1 3 14 14 C 1.41438 * 120.17270 * 0.02604 * 13 2 1 15 15 H 1.07998 * 119.99942 * 329.55327 * 14 13 2 16 16 C 1.39935 * 119.99986 * 149.56140 * 14 13 2 17 17 N 1.30821 * 119.99879 * 162.43208 * 16 14 13 18 18 Si 1.86799 * 119.99812 * 342.42239 * 16 14 13 19 19 H 1.48504 * 109.46879 * 95.37531 * 18 16 14 20 20 H 1.48500 * 109.47082 * 215.37319 * 18 16 14 21 21 H 1.48500 * 109.47493 * 335.37840 * 18 16 14 22 22 H 1.09002 * 109.47307 * 90.00146 * 1 2 3 23 23 H 1.09008 * 109.47390 * 209.99804 * 1 2 3 24 24 H 1.08996 * 109.46965 * 329.99676 * 1 2 3 25 25 H 1.08002 * 119.82352 * 180.27996 * 6 3 2 26 26 H 1.08005 * 119.97073 * 180.02562 * 12 7 6 27 27 H 0.97007 * 120.00001 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2067 1.2020 0.0000 4 6 1.4958 2.4450 -0.0006 5 7 0.9319 3.4312 -0.0015 6 6 3.6062 1.1954 0.0064 7 6 4.2996 -0.0019 0.0072 8 6 5.8066 0.0058 0.0135 9 9 6.2663 1.3272 0.0182 10 9 6.2715 -0.6532 1.1567 11 9 6.2810 -0.6494 -1.1278 12 6 3.6215 -1.2004 0.0013 13 6 2.2137 -1.2140 -0.0054 14 6 1.5146 -2.4435 -0.0113 15 1 0.5466 -2.5166 0.4619 16 6 2.0773 -3.5653 -0.6303 17 7 1.6236 -4.7610 -0.3545 18 14 3.4761 -3.3555 -1.8504 19 1 4.7737 -3.5402 -1.1523 20 1 3.3467 -4.3666 -2.9304 21 1 3.4200 -1.9931 -2.4384 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8901 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 4.1477 2.1298 0.0109 26 1 4.1701 -2.1307 0.0024 27 1 2.0139 -5.5387 -0.7833 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575646476.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:04 Heat of formation + Delta-G solvation = -127.488983 kcal Electronic energy + Delta-G solvation = -18463.075171 eV Core-core repulsion = 14962.855285 eV Total energy + Delta-G solvation = -3500.219886 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -51.12792 -48.63339 -48.59241 -40.45920 -37.56360 -35.70624 -34.22148 -32.68645 -29.47213 -27.32685 -25.67378 -24.64682 -21.83825 -20.72556 -19.50505 -19.45577 -18.61347 -17.63328 -16.97995 -16.50915 -16.34970 -15.53703 -15.31163 -15.25098 -15.04176 -14.83816 -14.77090 -14.73084 -14.40126 -14.04233 -13.91400 -13.77433 -13.29312 -13.23089 -13.13914 -12.80265 -12.58941 -12.20516 -11.82324 -11.60545 -11.16501 -9.77755 -9.74130 -8.94928 -6.56543 -0.10852 0.31366 1.27404 1.37724 1.46119 1.58875 1.77291 1.85333 2.07891 2.58444 2.75457 2.94729 3.16937 3.22662 3.53223 4.11678 4.16299 4.29729 4.58082 4.78170 4.85211 4.91659 5.11470 5.29735 5.35259 5.43131 5.60296 5.81507 6.23488 6.44553 6.48099 6.69385 8.10419 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.014584 B = 0.012535 C = 0.007408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.460430 B = 2233.202540 C = 3778.551783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.093 4.093 3 C -0.007 4.007 4 C 0.291 3.709 5 N -0.459 5.459 6 C -0.136 4.136 7 C -0.147 4.147 8 C 0.512 3.488 9 F -0.172 7.172 10 F -0.180 7.180 11 F -0.184 7.184 12 C -0.180 4.180 13 C 0.076 3.924 14 C -0.454 4.454 15 H 0.088 0.912 16 C 0.060 3.940 17 N -0.827 5.827 18 Si 0.928 3.072 19 H -0.260 1.260 20 H -0.274 1.274 21 H -0.242 1.242 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.059 0.941 25 H 0.146 0.854 26 H 0.111 0.889 27 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.614 4.480 -1.149 7.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.097 4.097 3 C -0.010 4.010 4 C -0.023 4.023 5 N -0.136 5.136 6 C -0.157 4.157 7 C -0.149 4.149 8 C 0.458 3.542 9 F -0.154 7.154 10 F -0.162 7.162 11 F -0.165 7.165 12 C -0.200 4.200 13 C 0.073 3.927 14 C -0.482 4.482 15 H 0.105 0.895 16 C -0.158 4.158 17 N -0.451 5.451 18 Si 0.751 3.249 19 H -0.185 1.185 20 H -0.200 1.200 21 H -0.165 1.165 22 H 0.094 0.906 23 H 0.091 0.909 24 H 0.077 0.923 25 H 0.164 0.836 26 H 0.128 0.872 27 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.718 5.704 -1.158 7.492 hybrid contribution 0.988 -0.901 -0.367 1.386 sum 5.706 4.803 -1.525 7.613 Atomic orbital electron populations 1.20656 0.90186 1.02211 1.02556 1.20300 0.96506 0.90540 1.02364 1.15513 0.91709 0.85752 1.08056 1.25632 0.92158 0.92210 0.92288 1.81166 1.09852 1.11802 1.10733 1.20366 0.91730 0.96817 1.06809 1.19432 0.89736 0.95897 1.09803 1.18326 0.89094 0.73401 0.73409 1.93141 1.90540 1.35479 1.96214 1.93187 1.90473 1.81319 1.51174 1.93173 1.90217 1.81562 1.51584 1.20969 0.94945 0.95840 1.08208 1.17394 0.90650 0.92905 0.91798 1.19505 1.05595 0.91764 1.31314 0.89450 1.26597 0.98117 0.93975 0.97109 1.69669 1.39392 1.00039 1.36031 0.86020 0.79022 0.80567 0.79301 1.18499 1.19960 1.16533 0.90635 0.90864 0.92252 0.83649 0.87163 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.32 9.21 71.24 0.66 -2.67 15 2 C -0.09 -3.50 5.97 -19.12 -0.11 -3.61 15 3 C -0.01 -0.23 5.72 -21.42 -0.12 -0.36 15 4 C 0.29 9.75 13.78 88.33 1.22 10.97 15 5 N -0.46 -16.09 18.54 19.00 0.35 -15.73 15 6 C -0.14 -4.53 9.14 22.71 0.21 -4.32 15 7 C -0.15 -5.32 5.36 -19.96 -0.11 -5.43 15 8 C 0.51 16.91 3.31 71.24 0.24 17.14 15 9 F -0.17 -5.11 15.95 44.97 0.72 -4.40 15 10 F -0.18 -6.00 17.23 44.97 0.77 -5.23 15 11 F -0.18 -6.23 17.23 44.97 0.77 -5.46 15 12 C -0.18 -7.31 6.67 22.77 0.15 -7.16 15 13 C 0.08 3.19 5.08 -21.32 -0.11 3.08 15 14 C -0.45 -21.03 8.91 23.47 0.21 -20.82 15 15 H 0.09 4.24 6.54 -2.91 -0.02 4.22 15 16 C 0.06 2.79 5.41 85.25 0.46 3.25 15 17 N -0.83 -39.84 13.93 21.82 0.30 -39.54 15 18 Si 0.93 37.35 24.52 68.60 1.68 39.04 15 19 H -0.26 -10.21 6.72 99.48 0.67 -9.54 15 20 H -0.27 -10.53 7.11 99.48 0.71 -9.82 15 21 H -0.24 -9.78 6.85 99.48 0.68 -9.10 15 22 H 0.08 2.37 8.14 -2.39 -0.02 2.35 15 23 H 0.07 2.52 6.32 -2.38 -0.02 2.51 15 24 H 0.06 1.81 7.08 -2.39 -0.02 1.79 15 25 H 0.15 4.16 7.13 -2.91 -0.02 4.14 15 26 H 0.11 4.60 4.80 -2.91 -0.01 4.59 15 27 H 0.30 12.98 8.30 -92.70 -0.77 12.21 15 Total: -1.00 -46.38 254.95 8.47 -37.90 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: 1.18 Total: 3.34 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 2.69 Total: -9.92 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: 0.66 Total: -55.27 kcal Atomic # 9 Polarization: -17.35 SS G_CDS: 2.27 Total: -15.08 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 1.68 Total: 39.04 kcal Total: -46.38 8.47 -37.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575646476.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.584 kcal (2) G-P(sol) polarization free energy of solvation -46.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds