Wall clock time and date at job start Mon Mar 30 2020 06:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36237 * 120.04764 * 2 1 4 4 C 1.40134 * 120.09971 * 179.97438 * 3 2 1 5 5 C 1.43204 * 119.90712 * 179.97438 * 4 3 2 6 6 N 4.78695 * 134.61102 * 0.02562 * 2 1 3 7 7 C 1.40167 * 120.18830 * 359.97438 * 4 3 2 8 8 C 1.50698 * 119.95046 * 180.28260 * 7 4 3 9 9 F 1.39903 * 109.47374 * 179.72155 * 8 7 4 10 10 F 1.39901 * 109.47205 * 299.71812 * 8 7 4 11 11 F 1.39897 * 109.47489 * 59.72365 * 8 7 4 12 12 C 1.36213 * 120.09983 * 0.02562 * 7 4 3 13 13 C 1.40927 * 120.05053 * 179.97438 * 2 1 3 14 14 C 1.40999 * 120.09365 * 0.04526 * 13 2 1 15 15 H 1.07995 * 120.00266 * 333.69193 * 14 13 2 16 16 C 1.40196 * 119.99990 * 153.69924 * 14 13 2 17 17 N 1.30678 * 120.00016 * 343.43683 * 16 14 13 18 18 Si 1.86796 * 120.00181 * 163.44115 * 16 14 13 19 19 H 1.48500 * 109.46904 * 60.00123 * 18 16 14 20 20 H 1.48499 * 109.47344 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47026 * 299.99955 * 18 16 14 22 22 H 1.08998 * 109.47580 * 270.02395 * 1 2 3 23 23 H 1.08999 * 109.47333 * 30.02828 * 1 2 3 24 24 H 1.09006 * 109.47131 * 150.02701 * 1 2 3 25 25 H 1.08008 * 119.95278 * 359.97303 * 3 2 1 26 26 H 1.08004 * 120.05155 * 179.97438 * 12 7 4 27 27 H 0.96998 * 120.00365 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1892 1.1793 0.0000 4 6 3.5905 1.1805 0.0005 5 6 4.3034 2.4225 0.0000 6 7 4.8688 3.4078 0.0015 7 6 4.2964 -0.0304 0.0016 8 6 5.8034 -0.0228 0.0086 9 9 6.2764 -1.3394 0.0149 10 9 6.2717 0.6355 -1.1335 11 9 6.2611 0.6425 1.1510 12 6 3.6224 -1.2140 0.0016 13 6 2.2127 -1.2198 0.0005 14 6 1.5108 -2.4427 0.0001 15 1 0.5146 -2.4937 0.4139 16 6 2.1062 -3.5925 -0.5374 17 7 3.1494 -3.4846 -1.3169 18 14 1.4082 -5.2789 -0.1393 19 1 -0.0003 -5.3537 -0.6037 20 1 2.2115 -6.3219 -0.8264 21 1 1.4582 -5.5015 1.3280 22 1 -0.3634 0.0004 1.0276 23 1 -0.3634 0.8897 -0.5143 24 1 -0.3634 -0.8903 -0.5134 25 1 1.6491 2.1147 -0.0004 26 1 4.1671 -2.1466 0.0021 27 1 3.5616 -4.2801 -1.6885 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575649526.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:57 Heat of formation + Delta-G solvation = -131.396233 kcal Electronic energy + Delta-G solvation = -18546.255953 eV Core-core repulsion = 15045.866636 eV Total energy + Delta-G solvation = -3500.389317 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -51.16723 -48.66579 -48.65006 -40.14494 -37.41380 -35.75696 -34.09657 -31.90690 -29.14310 -27.86697 -25.58071 -23.83614 -22.08954 -19.94505 -19.50782 -19.38225 -19.30811 -17.68357 -16.87195 -16.10869 -15.63278 -15.45859 -15.25026 -15.10271 -15.02020 -14.82934 -14.76246 -14.68395 -14.25206 -14.02693 -13.84080 -13.39209 -13.16849 -12.99203 -12.80940 -12.76425 -12.36993 -12.15210 -11.63891 -11.52983 -11.15105 -9.66482 -9.50290 -8.85382 -6.50485 0.10196 0.82111 1.44245 1.49456 1.58873 1.72114 1.83551 2.10807 2.19078 2.69700 2.83642 3.13397 3.25990 3.36959 3.64443 4.29805 4.62084 4.78666 4.95690 4.98699 5.16373 5.18796 5.27614 5.46025 5.55014 5.73796 5.92626 6.06791 6.37853 6.65179 6.67820 6.77076 8.08559 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.023086 B = 0.008638 C = 0.006663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.555296 B = 3240.810925 C = 4201.105522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.190 4.190 3 C -0.022 4.022 4 C -0.173 4.173 5 C 0.282 3.718 6 N -0.499 5.499 7 C -0.119 4.119 8 C 0.502 3.498 9 F -0.177 7.177 10 F -0.187 7.187 11 F -0.185 7.185 12 C -0.134 4.134 13 C 0.100 3.900 14 C -0.430 4.430 15 H 0.110 0.890 16 C 0.035 3.965 17 N -0.790 5.790 18 Si 0.985 3.015 19 H -0.251 1.251 20 H -0.273 1.273 21 H -0.256 1.256 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.135 0.865 26 H 0.127 0.873 27 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.900 -3.188 1.651 5.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.192 4.192 3 C -0.042 4.042 4 C -0.179 4.179 5 C -0.028 4.028 6 N -0.178 5.178 7 C -0.123 4.123 8 C 0.448 3.552 9 F -0.158 7.158 10 F -0.168 7.168 11 F -0.167 7.167 12 C -0.154 4.154 13 C 0.096 3.904 14 C -0.456 4.456 15 H 0.128 0.872 16 C -0.186 4.186 17 N -0.412 5.412 18 Si 0.805 3.195 19 H -0.175 1.175 20 H -0.198 1.198 21 H -0.181 1.181 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.153 0.847 26 H 0.145 0.855 27 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.803 -1.785 1.483 3.639 hybrid contribution 0.463 -0.997 -0.091 1.103 sum -2.340 -2.782 1.392 3.893 Atomic orbital electron populations 1.20490 0.89667 1.02295 1.01744 1.19867 0.97109 0.91600 1.10632 1.20369 0.90081 0.98411 0.95362 1.15048 0.92849 0.83764 1.26229 1.26040 0.92489 0.92935 0.91303 1.81054 1.09336 1.12230 1.15175 1.19345 0.88287 0.95716 1.08941 1.18689 0.90318 0.73061 0.73170 1.93133 1.90210 1.36296 1.96199 1.93154 1.90570 1.81438 1.51683 1.93156 1.90913 1.81101 1.51498 1.20911 0.95588 0.95190 1.03710 1.17897 0.90927 0.93754 0.87850 1.20252 1.02897 0.92204 1.30263 0.87180 1.27033 0.94050 1.05718 0.91791 1.69736 1.17401 1.34943 1.19110 0.85151 0.79665 0.74691 0.79975 1.17466 1.19753 1.18054 0.91559 0.91464 0.91855 0.84728 0.85491 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.59 9.39 71.24 0.67 -1.92 15 2 C -0.19 -7.32 5.90 -19.67 -0.12 -7.44 15 3 C -0.02 -0.82 9.32 22.26 0.21 -0.61 15 4 C -0.17 -7.28 5.74 -21.10 -0.12 -7.40 15 5 C 0.28 12.12 13.14 88.33 1.16 13.28 15 6 N -0.50 -22.15 18.54 19.00 0.35 -21.80 15 7 C -0.12 -5.25 5.36 -19.87 -0.11 -5.35 15 8 C 0.50 21.32 2.88 71.24 0.21 21.52 15 9 F -0.18 -7.35 15.94 44.97 0.72 -6.63 15 10 F -0.19 -8.05 16.52 44.97 0.74 -7.30 15 11 F -0.19 -7.75 16.50 44.97 0.74 -7.00 15 12 C -0.13 -6.11 8.00 22.47 0.18 -5.93 15 13 C 0.10 4.35 5.56 -21.28 -0.12 4.23 15 14 C -0.43 -17.82 8.10 23.42 0.19 -17.63 15 15 H 0.11 4.12 6.88 -2.91 -0.02 4.10 15 16 C 0.04 1.41 5.15 85.34 0.44 1.85 15 17 N -0.79 -34.27 10.98 21.87 0.24 -34.03 15 18 Si 0.99 30.23 29.59 68.60 2.03 32.26 15 19 H -0.25 -7.32 7.11 99.48 0.71 -6.61 15 20 H -0.27 -8.28 7.11 99.48 0.71 -7.57 15 21 H -0.26 -7.78 7.11 99.48 0.71 -7.08 15 22 H 0.07 1.80 8.14 -2.39 -0.02 1.78 15 23 H 0.07 1.74 8.08 -2.39 -0.02 1.72 15 24 H 0.06 1.95 6.77 -2.38 -0.02 1.94 15 25 H 0.13 4.27 8.06 -2.91 -0.02 4.24 15 26 H 0.13 6.01 5.28 -2.91 -0.02 5.99 15 27 H 0.30 11.83 8.29 -92.71 -0.77 11.07 15 Total: -1.00 -48.97 259.46 8.65 -40.32 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: 1.24 Total: 9.57 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 2.59 Total: -5.39 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.59 Total: -55.83 kcal Atomic # 9 Polarization: -23.14 SS G_CDS: 2.20 Total: -20.94 kcal Atomic # 14 Polarization: 30.23 SS G_CDS: 2.03 Total: 32.26 kcal Total: -48.97 8.65 -40.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575649526.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.077 kcal (2) G-P(sol) polarization free energy of solvation -48.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds